mRNA_E-fasciculatus_F_contig12869.2161.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12869.2161.1
Unique NamemRNA_E-fasciculatus_F_contig12869.2161.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: D8LGT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT9_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 2.130e-89
Identity = 162/204 (79.41%), Postives = 165/204 (80.88%), Query Frame = 1
Query:    1 APVSTPTSPKAASAADENCDAGGSNDDSNDGSSSNLDLTSSDTVAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQAAAVDEVAAAVAG 612
            APVS      A SAADENCDAG          SSNLDLTSSDTVAYSSRMIAA+RALESRRRDRLF DPYAELLAGPDAMQT ED+    AQEE S PPLEAT          AAASDGVPRD QRRLAIRTRFCDDFFEDC GPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVK ALLTQAAA DEVAAA+AG
Sbjct:   37 APVSPXXXXXAESAADENCDAGXXXXXXXXXXSSNLDLTSSDTVAYSSRMIAAARALESRRRDRLFDDPYAELLAGPDAMQTVEDK----AQEESSLPPLEAT-----AAATAAAASDGVPRDVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKGALLTQAAAADEVAAALAG 231          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: D7FXP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP3_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.360e-60
Identity = 109/131 (83.21%), Postives = 113/131 (86.26%), Query Frame = 1
Query:  220 LAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQAAAVDEVAAAVAG 612
            LAGPD +QT EDREK +AQEELSAPPLEAT          AAASDGVPRD Q RLAIRTRFCDDFFEDC GPRGIKQIVSLGAGMDTRGLR RASGDTKVFEVDQALVLRVK+ALLTQAAA DEVAAA+AG
Sbjct:   11 LAGPDPIQTVEDREKVKAQEELSAPPLEAT-----TAATAAAASDGVPRDVQTRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRRRASGDTKVFEVDQALVLRVKSALLTQAAAADEVAAALAG 136          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: UPI00184D101A (SAM-dependent methyltransferase n=2 Tax=Streptomyces sp. TaxID=1931 RepID=UPI00184D101A)

HSP 1 Score: 92.0 bits (227), Expect = 7.230e-19
Identity = 65/151 (43.05%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  130 VAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQAAA 582
            VA ++R  AA+RA ESRR DRLF DP +ELLAG D  Q  +    ARA +E                        G P      L IRTR+ DDF    T   G++QIV +GAG+DTR  RL    DT+VFEVDQ  VL  K  +L +A A
Sbjct:   27 VAQTARWTAAARARESRRPDRLFDDPLSELLAGEDGEQLLKYFHTARASDE------------------------GNPF-----LPIRTRWFDDFLARSTAD-GVRQIVGIGAGLDTRSFRLSWPEDTRVFEVDQQPVLTYKDKVLAEAGA 147          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: D7FXP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.960e-16
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1
Query:  472 MDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQAAAVDEVAAAVAG 612
            MDTRGLRLR SGDTKVFEVDQALVLRVK+ALLTQAAA DEVAAAVAG
Sbjct:    1 MDTRGLRLRVSGDTKVFEVDQALVLRVKSALLTQAAAADEVAAAVAG 47          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: UPI0018821DFE (SAM-dependent methyltransferase n=1 Tax=Tychonema sp. LEGE 07203 TaxID=1828671 RepID=UPI0018821DFE)

HSP 1 Score: 82.8 bits (203), Expect = 1.290e-15
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  130 VAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALL 567
            V++++R++AASRA ES+R +RLF DP++E LAG +AM             EL  P +E  +            ++G P      +A+RTRF DDF    +    I+Q+V LGAGMDTR  RL    +T  +E+D+A VL  K  +L
Sbjct:    9 VSFTARLMAASRAFESKRTNRLFNDPFSEQLAGIEAM-------------ELMLPKVEEYE------------ANGRPY-----VAVRTRFFDDFLMQYS--HTIRQVVLLGAGMDTRAYRLDLHPETHYYEIDRASVLDYKENIL 122          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: A0A352XFW5_9CYAN (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352XFW5_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 2.140e-15
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  103 NLDLTSSDTVAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQ 573
            N   T  + V+ S++++AA RA E+ R DRLF DP+A  LAG  A++ A++RE+                             D V      RLAIRTRF DDF  D      ++Q+V L AGMD R  RL     T ++E+D+A VL  K A+L +
Sbjct:   12 NQSFTIENFVSLSAQLVAAVRARETARNDRLFTDPFAAELAGKQALEMAKEREER--------------------------TKDSVAD----RLAIRTRFFDDFLIDAVSE--VRQVVILAAGMDARAFRLPWPDGTIIYELDKAEVLAKKEAILKE 136          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: UPI0019B7C6B2 (SAM-dependent methyltransferase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019B7C6B2)

HSP 1 Score: 82.8 bits (203), Expect = 2.810e-15
Identity = 56/150 (37.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  124 DTVAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQ 573
            D V  +++ +AA+RA+ES+R DRLF DPYA  LAG D          AR  + L        D                       LA+RT + DD      G  GI+Q+V L AGMDTR  RL     T V+E+D+  VL VK A+LT+
Sbjct:   63 DPVGQTAQWVAAARAVESQRPDRLFDDPYAVALAGQDG---------ARCLQVLGVSGKPIVDY----------------------LAMRTWYLDDLIASAVGDTGIRQVVILAAGMDTRAFRLPWPEGTHVYELDRPAVLAVKDAILTK 181          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: UPI0020216C42 (SAM-dependent methyltransferase n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI0020216C42)

HSP 1 Score: 81.3 bits (199), Expect = 4.720e-15
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  130 VAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALL 567
            V+++++++AA+RA+E++R D LF DP+AE LAG DA+Q A              P LE  +              G P  +     +RTRF DDF  +C+    ++Q+V LGAGMDTR  RL     T ++E+D + VL  K ++L
Sbjct:    9 VSFTAKVMAAARAIETQRPDALFIDPFAEQLAGADAIQAA-------------IPRLEEYEKR------------GRPFSS-----VRTRFFDDFLMNCS--HDVRQVVLLGAGMDTRAFRLNWKAGTHIYEIDHSDVLHYKESVL 122          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: A0A2K8T761_9NOSO (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Nostoc TaxID=1177 RepID=A0A2K8T761_9NOSO)

HSP 1 Score: 80.9 bits (198), Expect = 7.920e-15
Identity = 56/157 (35.67%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   97 SSNLDLTSSDTVAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALL 567
            S N  L+  D V  S+ ++AA RA+E++R DRLF DP+A  L  P+A                                  A A +    D +  LA+RTRF DDF    +      Q+VSLGAGMDTR  RL  +  TK +E+D   VL  K A+L
Sbjct:    4 SGNKKLSQKDFVLLSAPLMAAYRAIENQRNDRLFSDPFAAKLVTPEA---------------------------------EAIALEDPEEDGRAYLAVRTRFFDDFL--LSFAHVAPQVVSLGAGMDTRAFRLNWTEGTKYYEIDYPEVLNYKDAIL 125          
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Match: A0A2T0NC07_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=3 Tax=Actinomycetia TaxID=1760 RepID=A0A2T0NC07_9ACTN)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-14
Identity = 60/154 (38.96%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  130 VAYSSRMIAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPLEATDXXXXXXXXXAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQAAAVDE 591
            V  ++R  AA+RA ES R DRLF DPYA LLAGP+  +       +RA +E                        G P      L IRTR+ DD         G+ Q+V LGAG+DTR  RL     T V+EVDQ  VL  K A+L +A AV +
Sbjct:    9 VGETARWTAAARARESARPDRLFDDPYASLLAGPEGAELLRHFHTSRASDE------------------------GNPF-----LPIRTRWFDDTIGKGLAA-GLVQVVGLGAGLDTRAYRLAWPVGTTVYEVDQPTVLSYKLAVLDKAGAVPQ 132          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12869.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT9_ECTSI2.130e-8979.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXP3_ECTSI1.360e-6083.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00184D101A7.230e-1943.05SAM-dependent methyltransferase n=2 Tax=Streptomyc... [more]
D7FXP1_ECTSI1.960e-1693.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0018821DFE1.290e-1538.36SAM-dependent methyltransferase n=1 Tax=Tychonema ... [more]
A0A352XFW5_9CYAN2.140e-1536.31S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI0019B7C6B22.810e-1537.33SAM-dependent methyltransferase n=1 Tax=Candidatus... [more]
UPI0020216C424.720e-1536.30SAM-dependent methyltransferase n=1 Tax=Chroococci... [more]
A0A2K8T761_9NOSO7.920e-1535.67S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A2T0NC07_9ACTN1.060e-1438.96S-adenosyl-L-methionine-dependent methyltransferas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12869contigE-fasciculatus_F_contig12869:3..3191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.9
Seed ortholog evalue1.9e-72
Seed eggNOG ortholog2880.D8LGT9
EggNOG free text desc.Leucine carboxyl methyltransferase
EggNOG OGs2QRNU@2759,COG3315@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size612
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12869.2161.1prot_E-fasciculatus_F_contig12869.2161.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12869 3..3191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.9705408-CDS-E-fasciculatus_F_contig12869:2..981622927789.9705408-CDS-E-fasciculatus_F_contig12869:2..98Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 3..98 -
1695995695.6825595-CDS-E-fasciculatus_F_contig12869:2..981695995695.6825595-CDS-E-fasciculatus_F_contig12869:2..98Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 3..98 -
1622927789.981414-CDS-E-fasciculatus_F_contig12869:727..7931622927789.981414-CDS-E-fasciculatus_F_contig12869:727..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 728..793 -
1695995695.693618-CDS-E-fasciculatus_F_contig12869:727..7931695995695.693618-CDS-E-fasciculatus_F_contig12869:727..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 728..793 -
1622927789.996537-CDS-E-fasciculatus_F_contig12869:1695..19231622927789.996537-CDS-E-fasciculatus_F_contig12869:1695..1923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 1696..1923 -
1695995695.7086587-CDS-E-fasciculatus_F_contig12869:1695..19231695995695.7086587-CDS-E-fasciculatus_F_contig12869:1695..1923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 1696..1923 -
1622927790.007185-CDS-E-fasciculatus_F_contig12869:2969..31911622927790.007185-CDS-E-fasciculatus_F_contig12869:2969..3191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 2970..3191 -
1695995695.7201343-CDS-E-fasciculatus_F_contig12869:2969..31911695995695.7201343-CDS-E-fasciculatus_F_contig12869:2969..3191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12869 2970..3191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12869.2161.1

>prot_E-fasciculatus_F_contig12869.2161.1 ID=prot_E-fasciculatus_F_contig12869.2161.1|Name=mRNA_E-fasciculatus_F_contig12869.2161.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp
APVSTPTSPKAASAADENCDAGGSNDDSNDGSSSNLDLTSSDTVAYSSRM
IAASRALESRRRDRLFGDPYAELLAGPDAMQTAEDREKARAQEELSAPPL
EATDTDTDTDTVAAAASDGVPRDAQRRLAIRTRFCDDFFEDCTGPRGIKQ
IVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKTALLTQAAAVDEVAA
AVAG
back to top

mRNA from alignment at E-fasciculatus_F_contig12869:3..3191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12869.2161.1 ID=mRNA_E-fasciculatus_F_contig12869.2161.1|Name=mRNA_E-fasciculatus_F_contig12869.2161.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3189bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12869:3..3191- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCCGGTGAGCACACCAACATCTCCCAAAGCAGCGTCGGCAGCAGACGA AAACTGTGATGCAGGGGGAAGCAACGACGACTCCAACGACGGCAGCAGCA GCAATCTGGACTTGACCTCCTCTGACACCGTGGCCTACTCCTCGCGGATG ATTGCGGCGTCCAGAGCCTTGGAGTCGCGCCGCCGGGACCGCTTGTTCGG CGACCCTTACGCCGAGCTTCTGGTGAGGAGACCGCCTTCTCTCGAGGATA GTGATAGGCCTTAATACATGTAATTCGAAGTATGTGAATAGAGAGAGGTG GTTTCGTAGCCCTAGCCCCCAACCCAACACCATAACCCCTTCTAACACCA AGCTTGATATTTTCCTTGCGACACGCTACTGCTGTGATGAGGGGAGTTCG TTGGAGCGAAGCGTGTACAGCCGTACGTGCTTGCAATAACACCCTGGCGA CAAGCTATAGGTATTATTCTGGCTTCAATACATGAACCATAGGGTGTGTC AACGTTAGGGCCATGCGGCACCTTGCTTGTGTTGCCCAGGTACTTGATGT GCGAGTATTTTTGTACTTCGGGCAAGTATTGACCCTGAAGACTATTACCA CCCGGGATGGAGTTGCATGTGTGGAGGGCGGTGTTGTCTTGTGTCAGTGG TCAGTGGGTGTGATTTTTTTCCAAGCATGGCCGCTTTAGAAAAAACATTC CGTCGCTCAGCGAGTCTCCCACAGTGCGGAGCATGTGCGTACCACATCCA TTCTGCCGTGGACATCGGGTGCGATTCGCTTCCAGACAGCAGTCAGTGTC ATGCTCGCCCTCAGTGGGTCAAAACGTTTTCGATCGGGACCGCCACCACT TGCCGTGCCTCTGGCAACGATGGCGCAAGATCTGTTGTTCTGCGTCCGAT TCTTCCTTCCTTGGGTCATCTAATCTTCGCCCCCCCGGCCCCCGAATGCC CACGGCAAAACAAACATTTTTGAGCCACCTTTTGGCGAAGTAGGAAGGAA CGATTGGCCATCGATGATCGGTCTTCTGTTGGAATAATGCTCCGTCCGCT CGAGGCCAATGGTCAAACAACTAAGGCATGCTACAAAATGAGAACGCCCC CGCCCCCAATGCCTCCAGCTTCTGGTTCGTCCTTGTGAAACGTAGCCTGG GCCGGCGAAAACCCGGCATATCGCTCTGAACCGGCATTGTAAGGGAGCGA GGTCAGTGCCTTATGACTACGGCATGCGTTTTCATGAGTACTCCCCGTCC GTCGACTTGTTGCTTCAGGCCGGCCCCGATGCCATGCAGACCGCAGAGGA CCGTGAGAAGGCCAGAGCGCAAGAGGAGTTGTCGGCACCACCTCTGGAAG CCACCGACACCGACACGGACACGGACACCGTTGCCGCCGCCGCAAGCGAC GGTGTTCCGAGGGACGCCCAGAGGCGGCTGGCCATCCGCACACGCTTCTG CGACGACTTCTTCGAGGACTGCACAGGGCCGAGGGGTATTAAGCAGGTTA GCCTAGTGTGGTGGTCTATGTATCTAAGCAGGCTCGCCTATGCAGCGTAG TGGTCTTTGTTTGAGGCCACATGGTGCCAAGAGGGGCATCAAGCAGGTAA ACCTAGTATAGTGGTCTCTGTATCTATGCGCAGGTTCGCCTAGCGTAGTG GTCCCTGTTTAAGGCCGCATGGTGCCAGGGGGCTTTGGCCGGCCTTACGC CGGACACCCGGCGCTATCCAGAGTTTGAGACGGCTTGAATATTTCATATG CTTTACACGCGATTTCACTGGCGACGGGCGTTGTGCAACGATGCGGTGGT GAAAAACAGAACCGGGCATCGCCCGAATTACGGGCAAGCACTGCAATCGC TTTGCTCGTGGCCTGTACATGGTCGATTCATTCCTGCTTCGCTCTCTGAG GCCACCCTCATCCAGACTGCTGTCACAGTCCATGTCTTTGCGCTTACTTT TCTCGTAACGTGACGTACGCCCCCGAGGCCCTACCCCACAGTAGCCAAGC AGCACGTCGGGTTTTCACGTGCATCCTGCAAGGAAAAACGGAGAACTCGG TATGAAGTTTGATCGATCGGCGCATATGCGCGGGGGGCGGGGGGCAGTGT GCAGGTGGTGCCAGGCTGCGTAAAAAACCTTGAGTGTGTTGATCGTAACA AGGAGCACGCCCCGAACCCGGCTTAGTGTATCGATCGCGGCCGGTCGTCT GCCAAACCCAATCCAACCCAATCCAATCCAATCCAATCCAATCCACGCTC GTGTTTTCTCACAGGCAACCCCCCCCTCCCCTCAACAAACAAGGCCGCAC AGACCAGCTGTTGCTTGTCTCGAGGTCTACGACGCCTAACGCCGACCCTG ACCCTGTTATCTGTACCCGTGACCCTATGTACCTGTGCACGTTTGCAGAT TGTGTCTTTGGGGGCGGGCATGGACACGAGGGGGCTACGGCTCAGGGCTT CGGGGGACACCAAGGTGATAACCACGTGGGTGCGCGCGCTTGCGTGAGCG GGGACGGGGGCTCACAAGTCGATTAATCTGGGTCTGCTTGAGGGGTATTG AGGGGTATAATTTGAGGAGGGGGGGGGGCCTAGGACTGCTACGGCTAGGC AAACTGACGACCCGTTTCCTTCCGAAACGTGTGCCGGTAATATGTTTTAT TTCATACCACGACCTGCTTATTGTTGCTGCTGTTGCTACTGTTGCTGCTG CTGCTGCTACAGTAGGTGTTGAAAACTGTCCGTGCGGGCGTGTTTGGTAC CGTAGAAACCCGTGGGCGTTGCTTCGAAACGCAACCTTTTTCGATCTTCA CCGATTTGTGCCCCGAACACGTTCGAAGAGCGGACCAAGCATGCCAAGGT TTGAGAGTTTCTGAGACACAGCTTGCTACGTGCCCTGGAAGTGTCGAGGT TTTCATGTCGTGCCTTCCACTGTTTGAAGCATCCTCAGCGTGCTTCGAAC CCTGCCGAGCAATCAGGGGGCGTTTCATTTTCCACAACAACTGAGGCGTT TTCTTTTGGCATGAAAATGAACACGATTTCGAACCCAACACTGCCTTGCT TTCGTGACCAGCTTTTCCTCCACCACTGATGTTCGTACAGTAGGTGTTCG AGGTGGACCAAGCGCTCGTTCTTCGCGTCAAGACCGCCCTTCTCACGCAG GCGGCGGCGGTCGACGAAGTAGCGGCGGCGGTGGCGGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12869:3..3191-

>mRNA_E-fasciculatus_F_contig12869.2161.1 ID=mRNA_E-fasciculatus_F_contig12869.2161.1|Name=mRNA_E-fasciculatus_F_contig12869.2161.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12869:3..3191- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCCGGTGAGCACACCAACATCTCCCAAAGCAGCGTCGGCAGCAGACGA
AAACTGTGATGCAGGGGGAAGCAACGACGACTCCAACGACGGCAGCAGCA
GCAATCTGGACTTGACCTCCTCTGACACCGTGGCCTACTCCTCGCGGATG
ATTGCGGCGTCCAGAGCCTTGGAGTCGCGCCGCCGGGACCGCTTGTTCGG
CGACCCTTACGCCGAGCTTCTGGCGCCGGTGAGCACACCAACATCTCCCA
AAGCAGCGTCGGCAGCAGACGAAAACTGTGATGCAGGGGGAAGCAACGAC
GACTCCAACGACGGCAGCAGCAGCAATCTGGACTTGACCTCCTCTGACAC
CGTGGCCTACTCCTCGCGGATGATTGCGGCGTCCAGAGCCTTGGAGTCGC
GCCGCCGGGACCGCTTGTTCGGCGACCCTTACGCCGAGCTTCTGGCCGGC
CCCGATGCCATGCAGACCGCAGAGGACCGTGAGAAGGCCAGAGCGCAAGA
GGAGTTGTCGGCACCACCTCTGGAAGCCACCGACACCGACACGGACACGG
ACACCGTTGCCGCCGCCGCAAGCGACGGTGTTCCGAGGGACGCCCAGAGG
CGGCTGGCCATCCGCACACGCTTCTGCGACGACTTCTTCGAGGACTGCAC
AGGGCCGAGGGGTATTAAGCAGGCCGGCCCCGATGCCATGCAGACCGCAG
AGGACCGTGAGAAGGCCAGAGCGCAAGAGGAGTTGTCGGCACCACCTCTG
GAAGCCACCGACACCGACACGGACACGGACACCGTTGCCGCCGCCGCAAG
CGACGGTGTTCCGAGGGACGCCCAGAGGCGGCTGGCCATCCGCACACGCT
TCTGCGACGACTTCTTCGAGGACTGCACAGGGCCGAGGGGTATTAAGCAG
ATTGTGTCTTTGGGGGCGGGCATGGACACGAGGGGGCTACGGCTCAGGGC
TTCGGGGGACACCAAGATTGTGTCTTTGGGGGCGGGCATGGACACGAGGG
GGCTACGGCTCAGGGCTTCGGGGGACACCAAGGTGTTCGAGGTGGACCAA
GCGCTCGTTCTTCGCGTCAAGACCGCCCTTCTCACGCAGGCGGCGGCGGT
CGACGAAGTAGCGGCGGCGGTGGCGGGGGTGTTCGAGGTGGACCAAGCGC
TCGTTCTTCGCGTCAAGACCGCCCTTCTCACGCAGGCGGCGGCGGTCGAC
GAAGTAGCGGCGGCGGTGGCGGGG
back to top