mRNA_E-fasciculatus_F_contig12866.2160.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12866.2160.1
Unique NamemRNA_E-fasciculatus_F_contig12866.2160.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12866.2160.1 vs. uniprot
Match: A0A6H5KBF0_9PHAE (Raptor_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF0_9PHAE)

HSP 1 Score: 639 bits (1648), Expect = 1.970e-205
Identity = 502/648 (77.47%), Postives = 518/648 (79.94%), Query Frame = 1 
Query:    1 QRSSDPSLRDPSVRMWLCLCLAKLCWQYTEAQDACVRLDIQGSLFACLERKVETVEVRCAAVYALGSLYSREITANSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------ARIGAVLPPGLGGVAQGGGVGTPMIXXXXXXXXXXIIGQQEGGPGQRQGAPMMGVGGQASAGPGSADRGGGQRGGMDAWLSLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASPLLRREVVLALGVLVLNPAHFPFFVTIAQELAINRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGCRADGGDSNVSPQRQSXXXXXXXXXXXXXGLAGRLSTSPPVGSSRWVLPSPRLSSSVNSGSGLALGGIGGRGGGWRRGDANCGDAGGGGTADGSMPQQ------------QWRVRAEDANSVARGLVHGKIGAIGWGE--GGADKGQQXXXXXXXATPNLSEGVLQSVGVEAAQHYATLWTVLEEVRDVDPFPHVVDAAEAVIVPVAEQLEALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHEDPKTPPLSTPTSPLSPPLSAVAAGEVLLGSSADTRVSASSWS 1851
            QRSSDPSLR PSVRMWLCLCLAKLCWQYT+AQDACVRLDIQGSLFACLERKVETVEVRCAAVYALGSLYSREI A+ EA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       ARIGAVLPPGLG VAQGGGVGTPM XXXXXXXXXXI+G+Q+GGPGQRQGA MMGVGGQASAGPGS + GGG +GGMDAW SLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASPLLRREVVLALGVLVLNPAHFPFFVT+AQELAINRAAXXXXXXXXXXXXXXXXXXXXXXXXX      S CRA+ GDSNVSPQRQS             GLAG LS SP + SSRWV PSPRLSSSVN+ +G ALGGIG  GGGWR  DANCGDAGG GT DGS   Q            QWR RAEDANSVARGLV GKIG   WGE  G AD+ QQ       AT NLSEGVLQSVG EAA HYA LWTVLEEVRD+DPFPHVVDAAEAVI PVAEQLEALAA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 HEDPKTPPLSTPTSPLSPPLSAVA+ EV+LGSSADTRVSASSWS
Sbjct:  868 QRSSDPSLRHPSVRMWLCLCLAKLCWQYTDAQDACVRLDIQGSLFACLERKVETVEVRCAAVYALGSLYSREIIAHPEAGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVREGGPFQPAAPPPGQQQQQARIGAVLPPGLGRVAQGGGVGTPMFXXXXXXXXXXIVGRQDGGPGQRQGAQMMGVGGQASAGPGSTNGGGGHKGGMDAWPSLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASPLLRREVVLALGVLVLNPAHFPFFVTVAQELAINRAAXXXXXXXXXXXXXXXXXXXXXXXXXS----QSSCRAECGDSNVSPQRQSWNRGSAVAGGG--GLAGHLSKSPALRSSRWVPPSPRLSSSVNNSNGFALGGIGSHGGGWRGADANCGDAGGSGTTDGSTQHQHXXXXXXXXXXXQWRGRAEDANSVARGLVPGKIG---WGESVGCADREQQQ------ATLNLSEGVLQSVGAEAAHHYAALWTVLEEVRDMDPFPHVVDAAEAVIAPVAEQLEALAAARGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------AHEDPKTPPLSTPTSPLSPPLSAVASREVVLGSSADTRVSASSWS 1484
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12866.2160.1 vs. uniprot
Match: D7FIL6_ECTSI (Raptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL6_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 5.010e-131
Identity = 293/486 (60.29%), Postives = 303/486 (62.35%), Query Frame = 1 
Query:    7 SSDPSLRDPSVRMWLCLCLAKLCWQYTEAQDACVRLDIQGSLFACLERKVETVEVRCAAVYALGSLYSREITANSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARIGAVLPPGLGGVAQGGGVGTPMIXXXXXXXXXXIIGQQEGGPGQRQGAPMMGVGGQASAGPGSADRGGGQRGGMDAWLSLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASPLLRREVVLALGVLVLNPAHFPFFVTIAQELAINRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGCRADGGDSNVSPQRQSXXXXXXXXXXXXXGLAGRLSTSPPVGSSRWVLPSPRLSSSVNSGSGLALGGIGGRGGGWRRGDANCGDAGGGGTADGSMPQQ---QWRVRAEDANSVARGLVHGKIGAIGWGEGG---ADKGQQXXXXXXXATPNLSEGVLQSVGVEAAQHYA 1446
            SSDPSLRDPSVRMWLCLCLAKLCWQYT+AQDACVRLDIQGSLFACLERK                                                                                                                        +GGPGQRQGAPMMGVGGQASAGPGS D GGGQRGGMDAW SLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASPLLRREVVLALG+LVLNPAHFPFFVT+AQELAINRAAXXXXXXXXXXXXXXXXXXXXXXXXXXX    S CRA+ G+SNVSPQRQS             GLAGRLSTSPP+ SSRWVLPSPRLSSSVNS SG+ALGGIG  GGGWR GDANC DAG               QWR RAED NSVARGLV GKIG   WG G    AD+ QQ       ATPNL+EGVLQSVG EAAQHYA
Sbjct:  573 SSDPSLRDPSVRMWLCLCLAKLCWQYTDAQDACVRLDIQGSLFACLERK------------------------------------------------------------------------------------------------------------------------DGGPGQRQGAPMMGVGGQASAGPGSTDGGGGQRGGMDAWPSLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASPLLRREVVLALGLLVLNPAHFPFFVTVAQELAINRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXS--QSSCRAECGESNVSPQRQSGSRGSAVAGGG--GLAGRLSTSPPLRSSRWVLPSPRLSSSVNSSSGVALGGIGSHGGGWRGGDANCSDAGXXXXXXXXXXXXXXXQWRARAEDVNSVARGLVPGKIG---WGGGSVVCADREQQQ------ATPNLNEGVLQSVGAEAAQHYA 925
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12866.2160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBF0_9PHAE1.970e-20577.47Raptor_N domain-containing protein n=1 Tax=Ectocar... [more]
D7FIL6_ECTSI5.010e-13160.29Raptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12866contigE-fasciculatus_F_contig12866:508..3650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.1
Seed ortholog evalue3.8e-114
Seed eggNOG ortholog2880.D7FIL6
Preferred nameRPTOR
KEGG koko:K07204
KEGG Pathwayko04136,ko04138,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04714,ko04910,ko05206,map04136,map04138,map04140,map04150,map04151,map04152,map04211,map04213,map04714,map04910,map05206
GOsGO:0000003,GO:0000151,GO:0000182,GO:0000323,GO:0001016,GO:0001025,GO:0001030,GO:0001031,GO:0001032,GO:0001067,GO:0001101,GO:0001156,GO:0001558,GO:0001932,GO:0001933,GO:0001934,GO:0001936,GO:0001938,GO:0002165,GO:0002791,GO:0002792,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005776,GO:0005829,GO:0006139,GO:0006355,GO:0006359,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006914,GO:0006950,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0007517,GO:0007552,GO:0007562,GO:0007568,GO:0008047,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008286,GO:0008340,GO:0008361,GO:0008582,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009793,GO:0009886,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010073,GO:0010074,GO:0010154,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010492,GO:0010494,GO:0010506,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010623,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010799,GO:0010800,GO:0010817,GO:0010975,GO:0010976,GO:0012501,GO:0014070,GO:0016043,GO:0016070,GO:0016241,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019207,GO:0019209,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019827,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030234,GO:0030291,GO:0030295,GO:0030307,GO:0030422,GO:0030674,GO:0031047,GO:0031050,GO:0031053,GO:0031054,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031461,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0031931,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032101,GO:0032103,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032296,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032991,GO:0033135,GO:0033138,GO:0033554,GO:0033673,GO:0033674,GO:0034470,GO:0034641,GO:0034660,GO:0035069,GO:0035096,GO:0035194,GO:0035195,GO:0035196,GO:0035556,GO:0035770,GO:0036464,GO:0038201,GO:0038202,GO:0040008,GO:0040012,GO:0040017,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042594,GO:0043085,GO:0043086,GO:0043170,GO:0043200,GO:0043201,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0043434,GO:0043549,GO:0043565,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044877,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045786,GO:0045787,GO:0045793,GO:0045859,GO:0045860,GO:0045886,GO:0045893,GO:0045926,GO:0045927,GO:0045931,GO:0045935,GO:0045936,GO:0045937,GO:0045945,GO:0046483,GO:0046676,GO:0046883,GO:0046888,GO:0048316,GO:0048468,GO:0048477,GO:0048507,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048638,GO:0048640,GO:0048699,GO:0048707,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050708,GO:0050709,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050796,GO:0050803,GO:0050807,GO:0050896,GO:0050920,GO:0050921,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051223,GO:0051224,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051270,GO:0051272,GO:0051338,GO:0051347,GO:0051348,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051962,GO:0051963,GO:0051964,GO:0060033,GO:0060090,GO:0060255,GO:0060284,GO:0061061,GO:0061458,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070887,GO:0070918,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071359,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071684,GO:0071704,GO:0071840,GO:0071889,GO:0071900,GO:0071901,GO:0071902,GO:0080008,GO:0080084,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090068,GO:0090087,GO:0090276,GO:0090278,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098727,GO:0098772,GO:0120035,GO:0140098,GO:1900034,GO:1900087,GO:1901360,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902667,GO:1902669,GO:1902680,GO:1902806,GO:1902808,GO:1903506,GO:1903508,GO:1903530,GO:1903531,GO:1903664,GO:1903666,GO:1904396,GO:1904397,GO:1904950,GO:1905809,GO:1990234,GO:1990837,GO:1990904,GO:2000026,GO:2000045,GO:2000112,GO:2001141
EggNOG free text desc.TOR signaling
EggNOG OGsKOG1517@1,KOG1517@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRaptor
Ec32 orthologEc-27_000210.1
Exons4
Model size1946
Cds size1944
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12866.2160.1prot_E-fasciculatus_F_contig12866.2160.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12866 510..3650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.8998187-CDS-E-fasciculatus_F_contig12866:509..5931622927789.8998187-CDS-E-fasciculatus_F_contig12866:509..593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 510..593 -
1695995695.6376817-CDS-E-fasciculatus_F_contig12866:509..5931695995695.6376817-CDS-E-fasciculatus_F_contig12866:509..593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 510..593 -
1622927789.9100695-CDS-E-fasciculatus_F_contig12866:788..19021622927789.9100695-CDS-E-fasciculatus_F_contig12866:788..1902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 789..1902 -
1695995695.6503797-CDS-E-fasciculatus_F_contig12866:788..19021695995695.6503797-CDS-E-fasciculatus_F_contig12866:788..1902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 789..1902 -
1622927789.922074-CDS-E-fasciculatus_F_contig12866:2397..29891622927789.922074-CDS-E-fasciculatus_F_contig12866:2397..2989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 2398..2989 -
1695995695.660248-CDS-E-fasciculatus_F_contig12866:2397..29891695995695.660248-CDS-E-fasciculatus_F_contig12866:2397..2989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 2398..2989 -
1622927789.935037-CDS-E-fasciculatus_F_contig12866:3496..36501622927789.935037-CDS-E-fasciculatus_F_contig12866:3496..3650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 3497..3650 -
1695995695.6703463-CDS-E-fasciculatus_F_contig12866:3496..36501695995695.6703463-CDS-E-fasciculatus_F_contig12866:3496..3650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12866 3497..3650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12866.2160.1

>prot_E-fasciculatus_F_contig12866.2160.1 ID=prot_E-fasciculatus_F_contig12866.2160.1|Name=mRNA_E-fasciculatus_F_contig12866.2160.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=648bp
QRSSDPSLRDPSVRMWLCLCLAKLCWQYTEAQDACVRLDIQGSLFACLER
KVETVEVRCAAVYALGSLYSREITANSEAAAVAAAARGAGAAAAAAAAAA
GATPGAEAAGGREGGPFQPAAPPPGQQQQQQARIGAVLPPGLGGVAQGGG
VGTPMIPMMPMTPMVPIIGQQEGGPGQRQGAPMMGVGGQASAGPGSADRG
GGQRGGMDAWLSLVPDCSPGAAVAGTSETRRLDELDIALRLAKHSGDASP
LLRREVVLALGVLVLNPAHFPFFVTIAQELAINRAAAAAAAAAARKEAAR
RKGGKGSSSNGGGGSQSSGCRADGGDSNVSPQRQSGSRGSAVIGGGGGGL
AGRLSTSPPVGSSRWVLPSPRLSSSVNSGSGLALGGIGGRGGGWRRGDAN
CGDAGGGGTADGSMPQQQWRVRAEDANSVARGLVHGKIGAIGWGEGGADK
GQQQQQQQQQATPNLSEGVLQSVGVEAAQHYATLWTVLEEVRDVDPFPHV
VDAAEAVIVPVAEQLEALAAARRAAAAAARAAEEDGARGKPVRKGSTASS
GGGGSGGGASSRRNGGGGGAGGTHEDPKTPPLSTPTSPLSPPLSAVAAGE
VLLGSSADTRVSASSWSSSSPVVPDVVDLVAPAKKQQQQQQVQQQGGA
back to top

mRNA from alignment at E-fasciculatus_F_contig12866:508..3650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12866.2160.1 ID=mRNA_E-fasciculatus_F_contig12866.2160.1|Name=mRNA_E-fasciculatus_F_contig12866.2160.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3143bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12866:508..3650- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACGGTCGTCGGACCCGTCCCTGCGGGACCCCTCCGTGCGCATGTGGCT
GTGCCTGTGCCTCGCCAAGCTCTGCTGGCAGTACACCGAGGCGCAGGATG
CTTGCGTGCGGCTCGATATCCAGGGCAGCCTCTTCGCTTGCCTGGAACGC
AAAGGTGGGTAGGGCAGTGCCAATTTTTGCTCGGTACTGTGCCGGTGAAA
TCGCGTGTCACGGACGGGATGTTGAAGCTTTCTCATTCTCTGAGCAGCAC
CACGTGCCCGGTATAGGTATAGTGCCGGTGAAGCTGGCGGACGCATACGG
GCACTACGAGGGAGCCCCGCTATAGCAGGGTCGGCTTCGTCCGTGTTGAT
GCTGTGTATTTGGACTACTAATGAGGAGATGAGGAGGGCAACCGAGGAGT
ACAGTATTGCTCTAAGAAGGATTCGAGTATCGTCGCACGTGGTGTTGATA
GGAGCAGCCTGCGGATGAGGAAGTGGACCCTCGCAATCCCTTGTTTCGTT
GCCCATCTGTGCATCCTTTGTGCGTCTAGATTTTGCAGCGCGTTCACTCT
CTCACGCGCACCTCCTCACGAGTTTTTTGTTTTGTTCTTTTGACGGCGCC
GACTGCTGTGTAAAATTGCCAACACTGCTGTCGCGTGTGTTTTGATTTTG
CTTCTGAGCAGTGGAAACCGTCGAAGTACGATGCGCTGCCGTTTACGCGC
TGGGGTCCCTGTACAGCCGAGAGATCACCGCTAACTCCGAAGCGGCCGCG
GTGGCGGCGGCGGCCAGAGGAGCAGGCGCAGCTGCAGCAGCGGCGGCAGC
GGCAGCGGGGGCGACACCCGGAGCAGAGGCAGCCGGGGGAAGGGAAGGGG
GGCCCTTTCAACCGGCAGCTCCTCCCCCAGGGCAGCAACAACAGCAACAG
GCACGCATCGGCGCAGTGCTACCCCCGGGGCTCGGCGGGGTGGCGCAGGG
GGGGGGGGTAGGCACGCCGATGATTCCGATGATGCCGATGACGCCAATGG
TGCCGATTATCGGGCAACAAGAGGGGGGTCCCGGGCAACGACAAGGGGCG
CCAATGATGGGGGTAGGGGGCCAGGCAAGCGCCGGGCCTGGTTCTGCTGA
TAGAGGCGGCGGGCAGAGAGGGGGGATGGACGCGTGGCTATCGCTTGTGC
CGGATTGCTCTCCGGGGGCGGCGGTTGCCGGAACGTCGGAGACGAGACGG
CTGGACGAGCTGGACATCGCCTTGCGGCTGGCGAAGCATTCCGGGGATGC
GAGGTGCGTGTTGGGCACACGTGCTGTCTTTACTCGGTTGCGGCGTGGGG
TTGTGATTTCGACCGCTGTGTGATTGTGTCGAGGACAATCAGGCAGCATG
ACTTGCCAGTCGGAGCTAATGCTGTTGTGTGAGGAGTTCCTCCCATTTCG
CCCAAGGTGGTGTGTTTCACGGTCTGCTATGGTAGAGTACGCCCTTGCTT
TCTTACTCGCGTTGGGCGTGTTGGTCTTGCTTGCCCGAACGTCAAGGTCC
GTCGAGACAGACAGTAGTGCCCCGGCACGCCGCCGCTTTTGCGGTGCTGT
ATTGGTACCGTTTTTATCCGTTCGCCGCTTGTCACGCCTCCCGCTTCCCC
ACATCCCACTGAGTCAACACCTGCATCGTGTCTCGCCCCTCCCCCCCCCA
TCCCCCGTGTCTCGCACGGGCGACGGAAATGTCATCCATGCCAAATTTTT
TAACGCATGCACGGCGGTCGCGTTACGCCACACGACGACAACACACAGCC
CGCTGCTTCGTCGGGAGGTGGTGCTCGCGCTGGGGGTGCTCGTGCTGAAC
CCCGCGCACTTCCCGTTCTTCGTGACGATTGCGCAAGAGCTCGCCATCAA
CCGAGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGAGAAAAGAAGCGGCCC
GTCGGAAGGGCGGGAAGGGCTCATCGTCGAACGGTGGTGGCGGCAGCCAG
AGCAGCGGCTGCCGCGCCGATGGCGGCGATAGCAACGTTAGCCCCCAGCG
CCAGAGCGGGAGCCGGGGTAGCGCCGTCATCGGCGGCGGCGGCGGCGGGC
TCGCGGGCCGCCTGTCAACCAGCCCGCCTGTGGGAAGCTCTCGCTGGGTG
CTGCCGTCGCCGCGACTGTCGTCGTCGGTGAACAGCGGCAGCGGGCTCGC
CCTGGGCGGGATCGGCGGCCGCGGGGGGGGGTGGAGGAGGGGCGACGCAA
ACTGCGGTGACGCCGGCGGCGGTGGAACCGCTGACGGTTCGATGCCGCAG
CAGCAGTGGCGTGTTAGGGCGGAGGACGCCAACTCCGTGGCGCGAGGTTT
GGTACACGGGAAGATCGGAGCGATCGGATGGGGGGAGGGGGGCGCAGACA
AGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCCACCCCAAATCTTAGC
GAGGGCGTGCTGCAGAGCGTGGGGGTTGAGGCCGCGCAGCACTACGCCAC
GCTGTGGACAGTCCTGGAGGAGGTGCGGGATGTGGACCCGTTCCCGCACG
TAGTGGACGCGGCCGAGGCCGTGATCGTGCCGGTAGCGGAGCAACTCGAG
GCCCTAGCCGCCGCGCGCCGCGCCGCCGCCGCGGCCGCCCGCGCGGCAGA
GGAGGACGGGGCAAGGGGGAAACCGGTCAGGAAGGGGTCGACCGCAAGCA
GTGGCGGCGGCGGTAGTGGTGGTGGTGCCTCCTCCCGTCGGAACGGCGGC
GGCGGCGGCGCCGGTGGCACGCACGAAGACCCTAAGACGCCGCCGTTGTC
CACCCCGACGAGCCCGCTGTCCCCGCCGCTCTCGGCGGTAGCCGCCGGCG
AGGTGCTCCTCGGCTCTAGCGCCGACACGAGGGTGTCGGCATCGTCGTGG
TCCTCCTCGTCGTCGGTGTCCGGCGGCGGCGGCGGCAGGGAGGCCCGCGG
AGTCGGCGGGGGGGGGGGTGCCGGGGCTCATTGGGTCGCCGCCAGCCTGC
AGGCCGTCCCGCCGGCGGCGTGCGGCCTGAACGAGGCGCACATGCTGCAC
TCGTTCTACAAGTGGAGCTGCCGGGAGTTCAGCGAGCCGGTGGCGCCGCC
GCCGCCGCCGGTCGTGCCGGACGTTGTCGATCTCGTTGCTCCGGCGAAAA
AGCAGCAGCAGCAGCAGCAGGTGCAGCAGCAGGGGGGCGCCCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12866:508..3650-

>mRNA_E-fasciculatus_F_contig12866.2160.1 ID=mRNA_E-fasciculatus_F_contig12866.2160.1|Name=mRNA_E-fasciculatus_F_contig12866.2160.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12866:508..3650- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACGGTCGTCGGACCCGTCCCTGCGGGACCCCTCCGTGCGCATGTGGCT
GTGCCTGTGCCTCGCCAAGCTCTGCTGGCAGTACACCGAGGCGCAGGATG
CTTGCGTGCGGCTCGATATCCAGGGCAGCCTCTTCGCTTGCCTGGAACGC
AAAGCAACGGTCGTCGGACCCGTCCCTGCGGGACCCCTCCGTGCGCATGT
GGCTGTGCCTGTGCCTCGCCAAGCTCTGCTGGCAGTACACCGAGGCGCAG
GATGCTTGCGTGCGGCTCGATATCCAGGGCAGCCTCTTCGCTTGCCTGGA
ACGCAAAGTGGAAACCGTCGAAGTACGATGCGCTGCCGTTTACGCGCTGG
GGTCCCTGTACAGCCGAGAGATCACCGCTAACTCCGAAGCGGCCGCGGTG
GCGGCGGCGGCCAGAGGAGCAGGCGCAGCTGCAGCAGCGGCGGCAGCGGC
AGCGGGGGCGACACCCGGAGCAGAGGCAGCCGGGGGAAGGGAAGGGGGGC
CCTTTCAACCGGCAGCTCCTCCCCCAGGGCAGCAACAACAGCAACAGGCA
CGCATCGGCGCAGTGCTACCCCCGGGGCTCGGCGGGGTGGCGCAGGGGGG
GGGGGTAGGCACGCCGATGATTCCGATGATGCCGATGACGCCAATGGTGC
CGATTATCGGGCAACAAGAGGGGGGTCCCGGGCAACGACAAGGGGCGCCA
ATGATGGGGGTAGGGGGCCAGGCAAGCGCCGGGCCTGGTTCTGCTGATAG
AGGCGGCGGGCAGAGAGGGGGGATGGACGCGTGGCTATCGCTTGTGCCGG
ATTGCTCTCCGGGGGCGGCGGTTGCCGGAACGTCGGAGACGAGACGGCTG
GACGAGCTGGACATCGCCTTGCGGCTGGCGAAGCATTCCGGGGATGCGAG
TGGAAACCGTCGAAGTACGATGCGCTGCCGTTTACGCGCTGGGGTCCCTG
TACAGCCGAGAGATCACCGCTAACTCCGAAGCGGCCGCGGTGGCGGCGGC
GGCCAGAGGAGCAGGCGCAGCTGCAGCAGCGGCGGCAGCGGCAGCGGGGG
CGACACCCGGAGCAGAGGCAGCCGGGGGAAGGGAAGGGGGGCCCTTTCAA
CCGGCAGCTCCTCCCCCAGGGCAGCAACAACAGCAACAGGCACGCATCGG
CGCAGTGCTACCCCCGGGGCTCGGCGGGGTGGCGCAGGGGGGGGGGGTAG
GCACGCCGATGATTCCGATGATGCCGATGACGCCAATGGTGCCGATTATC
GGGCAACAAGAGGGGGGTCCCGGGCAACGACAAGGGGCGCCAATGATGGG
GGTAGGGGGCCAGGCAAGCGCCGGGCCTGGTTCTGCTGATAGAGGCGGCG
GGCAGAGAGGGGGGATGGACGCGTGGCTATCGCTTGTGCCGGATTGCTCT
CCGGGGGCGGCGGTTGCCGGAACGTCGGAGACGAGACGGCTGGACGAGCT
GGACATCGCCTTGCGGCTGGCGAAGCATTCCGGGGATGCGAGCCCGCTGC
TTCGTCGGGAGGTGGTGCTCGCGCTGGGGGTGCTCGTGCTGAACCCCGCG
CACTTCCCGTTCTTCGTGACGATTGCGCAAGAGCTCGCCATCAACCGAGC
GGCGGCGGCAGCGGCGGCGGCGGCGGCGAGAAAAGAAGCGGCCCGTCGGA
AGGGCGGGAAGGGCTCATCGTCGAACGGTGGTGGCGGCAGCCAGAGCAGC
GGCTGCCGCGCCGATGGCGGCGATAGCAACGTTAGCCCCCAGCGCCAGAG
CGGGAGCCGGGGTAGCGCCGTCATCGGCGGCGGCGGCGGCGGGCTCGCGG
GCCGCCTGTCAACCAGCCCGCCTGTGGGAAGCTCTCGCTGGGTGCTGCCG
TCGCCGCGACTGTCGTCGTCGGTGAACAGCGGCAGCGGGCTCGCCCTGGG
CGGGATCGGCGGCCGCGGGGGGGGGTGGAGGAGGGGCGACGCAAACTGCG
GTGACGCCGGCGGCGGTGGAACCGCTGACGGTTCGATGCCGCAGCAGCAG
TGGCGTGTTAGGGCGGAGGACGCCAACTCCGTGGCGCGAGGTTTGGTACA
CGGGAAGATCGGAGCGATCGGATGGGGGGAGGGGGGCGCAGACAAGGGGC
AGCAGCAGCAGCAGCAGCAGCAGCAGGCCACCCCAAATCTTAGCGAGGGC
GTGCTGCAGAGCGTGGGGGTTGAGGCCGCGCAGCACTACGCCACGCTGTG
GACAGTCCTGGAGGAGGTGCGGGATGTGGACCCGTTCCCGCACGTAGTGG
ACGCGGCCGAGGCCGTGATCGTGCCGGTAGCGGAGCAACTCGAGGCCCTA
GCCGCCGCGCGCCGCGCCGCCGCCGCGGCCGCCCGCGCGGCAGAGGAGGA
CGGGGCAAGGGGGAAACCGGTCAGGAAGGGGTCGACCGCAAGCAGTGGCG
GCGGCGGTAGTGGTGGTGGTGCCTCCTCCCGTCGGAACGGCGGCGGCGGC
GGCGCCGGTGGCACGCACGAAGACCCTAAGACGCCGCCGTTGTCCACCCC
GACGAGCCCGCTGTCCCCGCCGCTCTCGGCGGTAGCCGCCGGCGAGGTGC
TCCTCGGCTCTAGCGCCGACACGAGGGTGTCGGCATCGTCGTGGTCCTCC
TCGTCGCCCGCTGCTTCGTCGGGAGGTGGTGCTCGCGCTGGGGGTGCTCG
TGCTGAACCCCGCGCACTTCCCGTTCTTCGTGACGATTGCGCAAGAGCTC
GCCATCAACCGAGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGAGAAAAGA
AGCGGCCCGTCGGAAGGGCGGGAAGGGCTCATCGTCGAACGGTGGTGGCG
GCAGCCAGAGCAGCGGCTGCCGCGCCGATGGCGGCGATAGCAACGTTAGC
CCCCAGCGCCAGAGCGGGAGCCGGGGTAGCGCCGTCATCGGCGGCGGCGG
CGGCGGGCTCGCGGGCCGCCTGTCAACCAGCCCGCCTGTGGGAAGCTCTC
GCTGGGTGCTGCCGTCGCCGCGACTGTCGTCGTCGGTGAACAGCGGCAGC
GGGCTCGCCCTGGGCGGGATCGGCGGCCGCGGGGGGGGGTGGAGGAGGGG
CGACGCAAACTGCGGTGACGCCGGCGGCGGTGGAACCGCTGACGGTTCGA
TGCCGCAGCAGCAGTGGCGTGTTAGGGCGGAGGACGCCAACTCCGTGGCG
CGAGGTTTGGTACACGGGAAGATCGGAGCGATCGGATGGGGGGAGGGGGG
CGCAGACAAGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCCACCCCAA
ATCTTAGCGAGGGCGTGCTGCAGAGCGTGGGGGTTGAGGCCGCGCAGCAC
TACGCCACGCTGTGGACAGTCCTGGAGGAGGTGCGGGATGTGGACCCGTT
CCCGCACGTAGTGGACGCGGCCGAGGCCGTGATCGTGCCGGTAGCGGAGC
AACTCGAGGCCCTAGCCGCCGCGCGCCGCGCCGCCGCCGCGGCCGCCCGC
GCGGCAGAGGAGGACGGGGCAAGGGGGAAACCGGTCAGGAAGGGGTCGAC
CGCAAGCAGTGGCGGCGGCGGTAGTGGTGGTGGTGCCTCCTCCCGTCGGA
ACGGCGGCGGCGGCGGCGCCGGTGGCACGCACGAAGACCCTAAGACGCCG
CCGTTGTCCACCCCGACGAGCCCGCTGTCCCCGCCGCTCTCGGCGGTAGC
CGCCGGCGAGGTGCTCCTCGGCTCTAGCGCCGACACGAGGGTGTCGGCAT
CGTCGTGGTCCTCCTCGTCGCCGGTCGTGCCGGACGTTGTCGATCTCGTT
GCTCCGGCGAAAAAGCAGCAGCAGCAGCAGCAGGTGCAGCAGCAGGGGGG
CGCCCCGGTCGTGCCGGACGTTGTCGATCTCGTTGCTCCGGCGAAAAAGC
AGCAGCAGCAGCAGCAGGTGCAGCAGCAGGGGGGCGCC
back to top