prot_E-fasciculatus_F_contig12864.2158.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12864.2158.1
Unique Nameprot_E-fasciculatus_F_contig12864.2158.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length196
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12864.2158.1 vs. uniprot
Match: A0A6H5LEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEH4_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 7.930e-119
Identity = 168/195 (86.15%), Postives = 176/195 (90.26%), Query Frame = 0 
Query:    1 FATVGCDPRGQLLVWDTRTDGSRPVVRGALGCIRGSKAPYLCVASQPFTPEVFACGASTGEVLVWDVRTGVPLHELEAQDESSAGGGSWGVAFHPRSPRHLFSCSGTGVLTKWYVPPEGQAPRPAAGGGGGREGVVGGGWGDGGWESLRGARHLYELPSRSGMVGVCYDETADTVAAVSKHGHVVVAQGVAGLRL 195
            FATVGC+PRGQLLVWD RTDGSRPVVRGALGCIRGS+APYLCVASQPF PEVFACG STGEV+VWDVRTGVPLHEL+AQDE+SA GGSWGV FHPRSPRHLFSCSGTGVLTKWY+PPEGQA  PAA        V GG WG GGWESLRGARHLYELPSRSG+VGVCYDETADT+AAVSKHGHVVVA GVAGLRL
Sbjct:  269 FATVGCNPRGQLLVWDARTDGSRPVVRGALGCIRGSEAPYLCVASQPFAPEVFACGVSTGEVIVWDVRTGVPLHELQAQDETSAAGGSWGVTFHPRSPRHLFSCSGTGVLTKWYMPPEGQAHEPAA--------VDGGEWGGGGWESLRGARHLYELPSRSGLVGVCYDETADTIAAVSKHGHVVVAHGVAGLRL 455
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12864.2158.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LEH4_9PHAE7.930e-11986.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 26..66
e-value: 6.3
score: 11.9
coord: 69..114
e-value: 1.6
score: 15.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..127
e-value: 1.4E-18
score: 69.4
IPR037628Nucleoporin Nup43PANTHERPTHR22652NUCLEOPORIN NUP43coord: 1..114
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12864contigE-fasciculatus_F_contig12864:48..1922 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12864.2158.1mRNA_E-fasciculatus_F_contig12864.2158.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12864 48..2861 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12864.2158.1 ID=prot_E-fasciculatus_F_contig12864.2158.1|Name=mRNA_E-fasciculatus_F_contig12864.2158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
FATVGCDPRGQLLVWDTRTDGSRPVVRGALGCIRGSKAPYLCVASQPFTP
EVFACGASTGEVLVWDVRTGVPLHELEAQDESSAGGGSWGVAFHPRSPRH
LFSCSGTGVLTKWYVPPEGQAPRPAAGGGGGREGVVGGGWGDGGWESLRG
ARHLYELPSRSGMVGVCYDETADTVAAVSKHGHVVVAQGVAGLRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR037628Nup43
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat