mRNA_E-fasciculatus_F_contig12848.2150.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12848.2150.1
Unique NamemRNA_E-fasciculatus_F_contig12848.2150.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.570e-26
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  112 HGFHSGGLRAFNAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
            HG       AFNAAK+IFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQ GFYLGDDSHVKKTAGS  + T ++ V+
Sbjct:  365 HGGAGKSYCAFNAAKNIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQLGFYLGDDSHVKKTAGS--IRTLKVDVI 439
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.140e-26
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   91 SRALGVFHGFHSGGLR---AFNAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGS-RMLHTERLAV 339
            SR +    G H G  +   AFNAAK+IFKTGLVVTPTNSLRTSFTNLP+GWNVKTADHQ GFYLGDDSHVKKTAGS R L  + + +
Sbjct:  784 SRIVCAVTGEHGGAGKSYCAFNAAKNIFKTGLVVTPTNSLRTSFTNLPTGWNVKTADHQLGFYLGDDSHVKKTAGSIRALKVDVIII 870
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: D7G6J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J5_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.200e-21
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   91 SRALGVFHGFHSGGLR---AFNAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
            SR +    G H G  +   AF AAK IFKTGLVVTPTNSLRTSFT++PSGW+VKTADHQ GFYLG+DS ++KTAGS  + T ++ V+
Sbjct:  543 SRVVCAVTGEHGGAGKSYCAFRAAKKIFKTGLVVTPTNSLRTSFTDMPSGWSVKTADHQLGFYLGNDSEMRKTAGS--IRTLKVDVI 627
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.280e-21
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   91 SRALGVFHGFHSGGLR---AFNAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
            SR +    G H G  +   AF AAK IFKTGLVVTPTNSLRTSFT++PSGW+VKTADHQ GFYLG+DS ++KTAGS  + T ++ V+
Sbjct:  762 SRVVCAVTGEHGGAGKSYCAFRAAKKIFKTGLVVTPTNSLRTSFTDMPSGWSVKTADHQLGFYLGNDSEMRKTAGS--IRTLKVDVI 846
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: A0A6H5K992_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K992_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.980e-21
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:  115 GFHSGGLRAF---NAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGS-RMLHTERLAV 339
            G H G  +++    AA +IFKTGLVVTPTNSLRTSFT++P GW+VKT+DHQ GFYLGDDSHVKKTAGS R L  + + +
Sbjct:  847 GEHGGAGKSYCATRAATAIFKTGLVVTPTNSLRTSFTDMPCGWSVKTSDHQLGFYLGDDSHVKKTAGSIRTLKADVIII 925
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.220e-21
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:  112 HGFHSGGLRAFNAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
            HG       A  AAK++FKTGLV+TPTNSLRTS+T+LPSGW+VKTADHQ GF++GDD+ V+KTAGS  +H  R+ VV
Sbjct:  974 HGGAGKSYCALRAAKAVFKTGLVLTPTNSLRTSYTDLPSGWSVKTADHQLGFFIGDDARVRKTAGS--IHIPRVDVV 1048
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.790e-20
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   91 SRALGVFHGFHSGGLRAF---NAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGS-RMLHTERLAV 339
            SR +    G H G  +++    AA +IFKTGLVVTPTNSLRTSFT++P GW+VKTADHQ GFYLGDDS ++KTAGS R L+ + + +
Sbjct:  955 SRLVCAVTGEHGGAGKSYCATRAATAIFKTGLVVTPTNSLRTSFTDMPCGWSVKTADHQLGFYLGDDSEMRKTAGSIRTLNVDVIII 1041
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BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: A0A6H5JCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.960e-20
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   91 SRALGVFHGFHSGGLRAF---NAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
            SR +    G H G  +++    AA + F+TGLV+TPTNSLRTS+TNLPSGW+VKTADHQ GFYL DDS+VKKTAGS  + T ++ V+
Sbjct:  943 SRIVCAVTGEHGGAGKSYCTIRAATATFETGLVLTPTNSLRTSYTNLPSGWSVKTADHQLGFYLSDDSYVKKTAGS--IRTLKVDVI 1027
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: A0A6H5KMJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.200e-19
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   40 GIMRRKNLAFLTPHYMHSRALGVFHGFHSGG---LRAFNAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
             I++      LTP      AL + +G H G     R   AA + F+TGLV+TPTNSLRTS+ NLPSGW+VKTADHQ GFYL DDS+VKKTAGS  + T ++ V+
Sbjct:  327 SILKSLFRGLLTPQVTALSAL-LRYGEHGGAGKSYRTIRAATATFETGLVLTPTNSLRTSYPNLPSGWSVKTADHQLGFYLSDDSYVKKTAGS--IRTLKVDVI 427
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-19
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:  115 GFHSGGLRAF---NAAKSIFKTGLVVTPTNSLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVV 342
            G H G  +++    AA + F+TGLV+TPTNSLRTS+TNLPSGW+VKTADHQ GFYL DDS+VKKTAGS  + T ++ V+
Sbjct:  827 GEHGGAGKSYCTIRAATATFETGLVLTPTNSLRTSYTNLPSGWSVKTADHQLGFYLSDDSYVKKTAGS--IRTLKVDVI 903
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12848.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KWL4_9PHAE2.570e-2676.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI5.140e-2670.11Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G6J5_ECTSI1.200e-2162.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV89_ECTSI1.280e-2162.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K992_9PHAE5.980e-2164.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI8.220e-2163.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KSM3_9PHAE3.790e-2058.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCI8_9PHAE6.960e-2058.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMJ7_9PHAE1.200e-1952.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE1.720e-1962.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12848contigE-fasciculatus_F_contig12848:2724..3404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.5e-23
Seed eggNOG ortholog2880.D7FQN9
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size681
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12848.2150.1prot_E-fasciculatus_F_contig12848.2150.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12848 2769..3110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.7738864-UTR-E-fasciculatus_F_contig12848:2723..27681622927788.7738864-UTR-E-fasciculatus_F_contig12848:2723..2768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12848 2724..2768 +
1695995695.0729563-UTR-E-fasciculatus_F_contig12848:2723..27681695995695.0729563-UTR-E-fasciculatus_F_contig12848:2723..2768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12848 2724..2768 +
1622927788.8003645-UTR-E-fasciculatus_F_contig12848:3110..34041622927788.8003645-UTR-E-fasciculatus_F_contig12848:3110..3404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12848 3111..3404 +
1695995695.098104-UTR-E-fasciculatus_F_contig12848:3110..34041695995695.098104-UTR-E-fasciculatus_F_contig12848:3110..3404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12848 3111..3404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.784562-CDS-E-fasciculatus_F_contig12848:2768..31101622927788.784562-CDS-E-fasciculatus_F_contig12848:2768..3110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12848 2769..3110 +
1695995695.0865343-CDS-E-fasciculatus_F_contig12848:2768..31101695995695.0865343-CDS-E-fasciculatus_F_contig12848:2768..3110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12848 2769..3110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12848.2150.1

>prot_E-fasciculatus_F_contig12848.2150.1 ID=prot_E-fasciculatus_F_contig12848.2150.1|Name=mRNA_E-fasciculatus_F_contig12848.2150.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
MRRKNLAFLTPHYMHSRALGVFHGFHSGGLRAFNAAKSIFKTGLVVTPTN
SLRTSFTNLPSGWNVKTADHQPGFYLGDDSHVKKTAGSRMLHTERLAVVT
PRPKNPRGKGLSM*
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mRNA from alignment at E-fasciculatus_F_contig12848:2724..3404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12848.2150.1 ID=mRNA_E-fasciculatus_F_contig12848.2150.1|Name=mRNA_E-fasciculatus_F_contig12848.2150.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=681bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12848:2724..3404+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCATACTTGAACATAATACACCTACACCACGTATTTGGGTATAATGCG
CCGTAAGAATCTAGCTTTTCTCACACCACATTACATGCACTCAAGGGCTC
TAGGGGTGTTCCATGGTTTCCACTCGGGAGGGCTCCGTGCCTTCAACGCT
GCCAAGAGTATCTTCAAAACGGGGTTGGTCGTTACCCCTACCAATAGTCT
GAGAACGTCCTTCACAAACCTTCCATCCGGTTGGAATGTAAAGACCGCTG
ACCACCAGCCCGGATTCTACCTGGGCGATGATTCTCATGTGAAGAAGACG
GCGGGGTCTAGGATGTTACACACAGAACGACTTGCTGTGGTCACACCGAG
GCCCAAGAACCCAAGAGGCAAGGGGCTCTCCATGTAGAAGTATTGAGACA
CCCCTAGGTTACGTGTCAATCTCGGTCGCGGGGGGGGGAGCAAGGCCTTA
TATGTCCCCGGGGGGGGACATTTGGACCAAATCCCCGGAGTTTCGACATT
TTCCGGGCGCTCATTTCAGTGCGCGGGATCCCACGCAGAGCTACTGTAGT
GCGAAATATGAAACCACCCCCAGACTACGCGTCAATTTTGGTCGCGATGA
GGGGGGAGACTAGTGTTGCGTACAGCAGTTAGCGCCCGCAATTAAGAAAT
GCTCACTGTTCCGCGAAAAATAAGAAAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12848:2724..3404+

>mRNA_E-fasciculatus_F_contig12848.2150.1 ID=mRNA_E-fasciculatus_F_contig12848.2150.1|Name=mRNA_E-fasciculatus_F_contig12848.2150.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12848:2724..3404+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCCGTAAGAATCTAGCTTTTCTCACACCACATTACATGCACTCAAG
GGCTCTAGGGGTGTTCCATGGTTTCCACTCGGGAGGGCTCCGTGCCTTCA
ACGCTGCCAAGAGTATCTTCAAAACGGGGTTGGTCGTTACCCCTACCAAT
AGTCTGAGAACGTCCTTCACAAACCTTCCATCCGGTTGGAATGTAAAGAC
CGCTGACCACCAGCCCGGATTCTACCTGGGCGATGATTCTCATGTGAAGA
AGACGGCGGGGTCTAGGATGTTACACACAGAACGACTTGCTGTGGTCACA
CCGAGGCCCAAGAACCCAAGAGGCAAGGGGCTCTCCATGTAGATGCGCCG
TAAGAATCTAGCTTTTCTCACACCACATTACATGCACTCAAGGGCTCTAG
GGGTGTTCCATGGTTTCCACTCGGGAGGGCTCCGTGCCTTCAACGCTGCC
AAGAGTATCTTCAAAACGGGGTTGGTCGTTACCCCTACCAATAGTCTGAG
AACGTCCTTCACAAACCTTCCATCCGGTTGGAATGTAAAGACCGCTGACC
ACCAGCCCGGATTCTACCTGGGCGATGATTCTCATGTGAAGAAGACGGCG
GGGTCTAGGATGTTACACACAGAACGACTTGCTGTGGTCACACCGAGGCC
CAAGAACCCAAGAGGCAAGGGGCTCTCCATGTAG
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