mRNA_E-fasciculatus_F_contig12843.2148.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12843.2148.1
Unique NamemRNA_E-fasciculatus_F_contig12843.2148.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12843.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12843contigE-fasciculatus_F_contig12843:2928..3332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.6262133-CDS-E-fasciculatus_F_contig12843:2927..32781622927788.6262133-CDS-E-fasciculatus_F_contig12843:2927..3278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12843 2928..3278 +
1695995694.983327-CDS-E-fasciculatus_F_contig12843:2927..32781695995694.983327-CDS-E-fasciculatus_F_contig12843:2927..3278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12843 2928..3278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.6377175-UTR-E-fasciculatus_F_contig12843:3278..33321622927788.6377175-UTR-E-fasciculatus_F_contig12843:3278..3332Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12843 3279..3332 +
1695995694.9927707-UTR-E-fasciculatus_F_contig12843:3278..33321695995694.9927707-UTR-E-fasciculatus_F_contig12843:3278..3332Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12843 3279..3332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12843.2148.1prot_E-fasciculatus_F_contig12843.2148.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12843 2928..3278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12843.2148.1

>prot_E-fasciculatus_F_contig12843.2148.1 ID=prot_E-fasciculatus_F_contig12843.2148.1|Name=mRNA_E-fasciculatus_F_contig12843.2148.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
RTRNQEFRIIVFGSVAGEAGGTPFFLASCIRPFGEEPLDAPFLKLLRLPL
LPLAVSAFVLRNLVFSALLYVGVGTRRLVYRGSPLRSNPNVHVPVNVPRL
GGLRVFWCGVSTTLQV*
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mRNA from alignment at E-fasciculatus_F_contig12843:2928..3332+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12843.2148.1 ID=mRNA_E-fasciculatus_F_contig12843.2148.1|Name=mRNA_E-fasciculatus_F_contig12843.2148.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=405bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12843:2928..3332+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACACGAAATCAGGAATTCAGGATCATAGTATTCGGGTCAGTCGCAGG
AGAGGCAGGGGGTACTCCTTTCTTCCTCGCCTCCTGCATTCGGCCGTTTG
GGGAGGAACCACTAGACGCACCATTTCTCAAGCTCTTGCGACTACCGCTT
TTGCCTTTGGCGGTCAGTGCGTTCGTACTTCGAAATTTAGTGTTCTCAGC
GCTGCTCTACGTAGGCGTTGGCACTAGGCGATTAGTCTATCGAGGCTCTC
CGCTTCGGTCCAATCCTAATGTCCATGTGCCAGTCAATGTTCCTAGACTA
GGAGGACTGCGGGTGTTTTGGTGTGGTGTTTCCACCACGTTGCAAGTGTA
GACGGCCCTATGGACAAGATCACCTTCTCTCAAATTCAGGCCATCAGGAG
GAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12843:2928..3332+

>mRNA_E-fasciculatus_F_contig12843.2148.1 ID=mRNA_E-fasciculatus_F_contig12843.2148.1|Name=mRNA_E-fasciculatus_F_contig12843.2148.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12843:2928..3332+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACACGAAATCAGGAATTCAGGATCATAGTATTCGGGTCAGTCGCAGG
AGAGGCAGGGGGTACTCCTTTCTTCCTCGCCTCCTGCATTCGGCCGTTTG
GGGAGGAACCACTAGACGCACCATTTCTCAAGCTCTTGCGACTACCGCTT
TTGCCTTTGGCGGTCAGTGCGTTCGTACTTCGAAATTTAGTGTTCTCAGC
GCTGCTCTACGTAGGCGTTGGCACTAGGCGATTAGTCTATCGAGGCTCTC
CGCTTCGGTCCAATCCTAATGTCCATGTGCCAGTCAATGTTCCTAGACTA
GGAGGACTGCGGGTGTTTTGGTGTGGTGTTTCCACCACGTTGCAAGTGTA
GCGCACACGAAATCAGGAATTCAGGATCATAGTATTCGGGTCAGTCGCAG
GAGAGGCAGGGGGTACTCCTTTCTTCCTCGCCTCCTGCATTCGGCCGTTT
GGGGAGGAACCACTAGACGCACCATTTCTCAAGCTCTTGCGACTACCGCT
TTTGCCTTTGGCGGTCAGTGCGTTCGTACTTCGAAATTTAGTGTTCTCAG
CGCTGCTCTACGTAGGCGTTGGCACTAGGCGATTAGTCTATCGAGGCTCT
CCGCTTCGGTCCAATCCTAATGTCCATGTGCCAGTCAATGTTCCTAGACT
AGGAGGACTGCGGGTGTTTTGGTGTGGTGTTTCCACCACGTTGCAAGTGT
AG
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