mRNA_E-fasciculatus_F_contig1284.2144.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1284.2144.1
Unique NamemRNA_E-fasciculatus_F_contig1284.2144.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 1.480e-141
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 2 
Query:  335 MEGSGPRLTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            MEGSGPRL+DEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 288 bits (736), Expect = 8.370e-91
Identity = 138/210 (65.71%), Postives = 178/210 (84.76%), Query Frame = 2 
Query:  353 RLTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVS----MTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            +L+ EG K++RIR+TC+KML KRGYNV  EH+S      ++ F++Q+G  P+R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M +E V+++IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL++E+KAELLKRYKL DTQLPRI STDPVAR++G+Q+GQV KI RPSETAGRYVTYRLC+
Sbjct:    4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 243 bits (620), Expect = 2.700e-73
Identity = 122/205 (59.51%), Postives = 160/205 (78.05%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            LT E  ++YR+ +T   MLEKRGY V +E  +M+++AF Q++G +P R  LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVLS  +K ELLKRY+LK+TQLPRIQ  DPVAR++GM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 229
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.330e-72
Identity = 115/202 (56.93%), Postives = 157/202 (77.72%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYR 961
            L  E  K++R+R+T +KML  RGY V +E +  T E F+ Q+G  P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VL+ E+K  LLKRYKLKDTQLPR+Q++DP+AR++GM +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202
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BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 240 bits (612), Expect = 1.940e-72
Identity = 115/202 (56.93%), Postives = 158/202 (78.22%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYR 961
            LT E  ++YR+R+T +KML  RGY V +  + MT E+F  Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR++G+ +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 239 bits (611), Expect = 3.220e-72
Identity = 119/205 (58.05%), Postives = 160/205 (78.05%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            L  E  K++R+R+TC+KML KRGY V +  + M+++ F  ++G  P+R  LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M    V RAIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VL+ +QK ELL+RY+LK +QLPRIQ  DP+AR+ G+++GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 238 bits (607), Expect = 2.270e-71
Identity = 120/209 (57.42%), Postives = 160/209 (76.56%), Query Frame = 2 
Query:  344 SGPRLTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            SG  L  E  +++R+ +T   ML KRGY V ++   M+   F++++   P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M +E V RAI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVLS+ +K ELLKRY+LKDTQLPRIQ  DPVARF+GM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMKRGQVVKIIRPSETAGRYVTYRVCL 229
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A7S3V5Q1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Q1_9STRA)

HSP 1 Score: 238 bits (607), Expect = 4.800e-71
Identity = 118/205 (57.56%), Postives = 159/205 (77.56%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            LT +  +++R+ +T   ML KRGY V ++   MT   F Q++G  P+R  LT+LVEK DD  DQ+FVFFP+DEKVGVKPI+ Y+++M +E V  +I+V++  IT +A+ A+QE+      ++E FK+AEL++DITEHTLVPEHQVLS  +KAELLKRY+LK+TQLPRIQ  DPVAR++GM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   50 LTPDASRLFRVYKTVSAMLNKRGYMVPRDMREMTPALFTQKFGEHPSREALTILVEKADDETDQLFVFFPEDEKVGVKPIKVYTDRMKDEAVTNSILVLRVDITGYAKQAVQEM--SDSCRIEHFKEAELLVDITEHTLVPEHQVLSPNEKAELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 252
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 243 bits (620), Expect = 5.300e-71
Identity = 118/205 (57.56%), Postives = 160/205 (78.05%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            LT E  +++R+R+T +KML  RGY V +  + MT E+F QQ+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VLS ++KA LLKRY++KD+QLPR+Q TDP+AR++G+ +GQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVI 206
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 239 bits (609), Expect = 5.390e-71
Identity = 117/205 (57.07%), Postives = 157/205 (76.59%), Query Frame = 2 
Query:  356 LTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 970
            LT E  ++YR+R+T +KML  R Y V +  + MT EAF  Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY+++D+QLPR+Q TDP+AR++GM +GQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1284.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI1.480e-14199.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA8.370e-9165.71RNA polymerase Rpb5, C-terminal domain-containing ... [more]
A0A6S9BLJ2_9STRA2.700e-7359.51Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
W4GMP1_9STRA1.330e-7256.93Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3WP89_GLOUD1.940e-7256.93Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A482UUV9_9ARCH3.220e-7258.05DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
A0A7S2KP14_9STRA2.270e-7157.42Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3V5Q1_9STRA4.800e-7157.56Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A5D6XUM4_9STRA5.300e-7157.56Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4Y6Z7_9STRA5.390e-7157.07DNA-directed RNA polymerase I, II, and III subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1284contigE-fasciculatus_F_contig1284:10178..14550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score423.7
Seed ortholog evalue5.1e-116
Seed eggNOG ortholog2880.D7G1Y9
Preferred nameRPB5
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG2012@1,KOG3218@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase, subunit H/Rpb5 C-terminal
Ec32 orthologEc-07_003640.1
Exons5
Model size1773
Cds size639
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.3608382-UTR-E-fasciculatus_F_contig1284:10177..105111622927788.3608382-UTR-E-fasciculatus_F_contig1284:10177..10511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1284 10178..10511 +
1695995694.7831545-UTR-E-fasciculatus_F_contig1284:10177..105111695995694.7831545-UTR-E-fasciculatus_F_contig1284:10177..10511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1284 10178..10511 +
1622927788.4247744-UTR-E-fasciculatus_F_contig1284:13750..145501622927788.4247744-UTR-E-fasciculatus_F_contig1284:13750..14550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1284 13751..14550 +
1695995694.852439-UTR-E-fasciculatus_F_contig1284:13750..145501695995694.852439-UTR-E-fasciculatus_F_contig1284:13750..14550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1284 13751..14550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.3733003-CDS-E-fasciculatus_F_contig1284:10511..107031622927788.3733003-CDS-E-fasciculatus_F_contig1284:10511..10703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 10512..10703 +
1695995694.803349-CDS-E-fasciculatus_F_contig1284:10511..107031695995694.803349-CDS-E-fasciculatus_F_contig1284:10511..10703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 10512..10703 +
1622927788.3837025-CDS-E-fasciculatus_F_contig1284:11536..117221622927788.3837025-CDS-E-fasciculatus_F_contig1284:11536..11722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 11537..11722 +
1695995694.8134367-CDS-E-fasciculatus_F_contig1284:11536..117221695995694.8134367-CDS-E-fasciculatus_F_contig1284:11536..11722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 11537..11722 +
1622927788.3947012-CDS-E-fasciculatus_F_contig1284:11975..120501622927788.3947012-CDS-E-fasciculatus_F_contig1284:11975..12050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 11976..12050 +
1695995694.8236504-CDS-E-fasciculatus_F_contig1284:11975..120501695995694.8236504-CDS-E-fasciculatus_F_contig1284:11975..12050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 11976..12050 +
1622927788.4052124-CDS-E-fasciculatus_F_contig1284:12837..129481622927788.4052124-CDS-E-fasciculatus_F_contig1284:12837..12948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 12838..12948 +
1695995694.8332415-CDS-E-fasciculatus_F_contig1284:12837..129481695995694.8332415-CDS-E-fasciculatus_F_contig1284:12837..12948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 12838..12948 +
1622927788.415413-CDS-E-fasciculatus_F_contig1284:13675..137501622927788.415413-CDS-E-fasciculatus_F_contig1284:13675..13750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 13676..13750 +
1695995694.8426795-CDS-E-fasciculatus_F_contig1284:13675..137501695995694.8426795-CDS-E-fasciculatus_F_contig1284:13675..13750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1284 13676..13750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1284.2144.1prot_E-fasciculatus_F_contig1284.2144.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1284 10512..13750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1284.2144.1

>prot_E-fasciculatus_F_contig1284.2144.1 ID=prot_E-fasciculatus_F_contig1284.2144.1|Name=mRNA_E-fasciculatus_F_contig1284.2144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=213bp
MEGSGPRLTDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYG
PEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVK
RAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSE
TAGRYVTYRLCI*
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mRNA from alignment at E-fasciculatus_F_contig1284:10178..14550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1284.2144.1 ID=mRNA_E-fasciculatus_F_contig1284.2144.1|Name=mRNA_E-fasciculatus_F_contig1284.2144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4373bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1284:10178..14550+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTGCTTGAAAATCGGGTCCCGACCTTGTATTTCAGGACCAAAGAGCCA
GTGAACGTTGGGAGTGGCCACAGGGATACGTACCGACGACCGCTGTTGGC
ACTGGCACACACCGCTCTCGATCCACCAGGCAGGAACTGCAACAGGCCTG
TGGCAAACACGGAGGATTTACCACAATCACGTCACCTTGCTAAGACTTTC
TTTGGGGTGGGGAGTAGCTGTGGTGTAGGGCTCGCCAACACCCAACCGCC
AGGAGGAATCAATACTGCGAGGGAACGCAAGCAGCAGCAGCAGAGGCTGA
AAGCAAGTTGGGGAGCAGCAGCTATAAATAGGGGATGGAGGGCTCGGGGC
CGCGGCTAACAGATGAGGGGCACAAGATCTACCGGATTCGGCAGACGTGC
ATGAAGATGCTGGAGAAGCGAGGCTACAACGTGCTGCAGGAGCACGTCTC
CATGACCTCTGAGGCGTTCTTGCAGCAGTACGGGCCCGAGCCCAACAGGC
ACGACTTGACGCTGCTGGTAGAAAAGGTGGGGAGAGGGCCGGCCGTTTGG
AGCAGGAATGCGGGCAGCAGGAACTAGTGCAATGATCCCTCGCGATTTTG
GTACGCATGACTATCATCCAGCCGAGCCTATCTATGTAGCGGAGATAGTT
TTAGAACATGAACATGTGGTTTTTGTTGGGGGGGGTGATGAGGGCGACGC
AGGGGTATTGTTGTGTAGCCTGCCTCCGGCACTAGCAGGTCTGGTGGTCT
CTGTCGTCGTCGGGAAGAGTTGGGTCCGTTTGCTTCTCTGCTCTCGACTC
GTTGACGCAAGAGCGATTTCCTGCAGTTGGGATGTGCATGCGGTGTTTCC
ACTCTATTGTTCCCACAACGCCCTTTTGGCGAAAACTATACTGTTGATTG
TACTAGTTGTGCGTATTTGTCGAAAGGAACTCTGCCTTCCCTTGACACGA
GTTGACGCTGACGGGGCTTGCGAAGTGCGAGACCTATAATTCCTTCCAAC
CTGCTGGCATTCCGTATACTCCGTATATGTGGCTGAGGTGTACAGGGTGT
ATGTATCGAAGGCCTCCCGAGTTCTTCAACGGGTTTGACTGGGAGTTTGT
GCACTTTTCTGTAAATTAGTATGTACATAGAGCATCGTCTTTGTGCTGTG
GCCCCTGGAGGCCTAGACCTGCTTCTCCACCGAATGAACACGGAAATTGT
ATCGAATCCTATTCTGACTACGTCTCTACGACACATTGCTGTCTACTGTT
TGTATCGCCCTCGCTTCTTCGGTCCATCTCTCTGGTGGTGGTGGTGGTGG
TTGTGGTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCCT
CTGCTGCAGGTAGACGATCCGATGGACCAGATCTTCGTCTTCTTTCCCGA
CGACGAGAAGGTCGGCGTGAAGCCGATCAGAAGCTACTCGGAGAAGATGC
TGGAAGAGGAGGTGAAGAGGGCCATCATCGTCATCAAGGGCGGTATTACT
CCGTTCGCCAGGTCCGCCATCCAAGAACTCTGCGCCCAGCGAGAGGTATG
TTGTACTTACTACCTGTTCGCACACAACAGCGCCAACGCACAAGCACATC
CCTACTTGGAATGCGTTAGTAGTGATATCTACGTCCAGCTACATGTGCTG
GTATCCGCGCACGTATTTTACAGTGTGGTTCTTCTTAGAGCAAACTGACA
TTAAGACTACCACGACAAGGGTAATGATGACAGCAGCAGCGGCAGCAGCA
AAAAAAAACAACGACGACAAGAGTACACCCTTCCTCTCACATCCGCAGGT
CCAGGTGGAAGACTTTAAAGACGCGGAGCTCATGCTGGACATCACGGAGC
ACACGCTTGTGCCGGAGCACCAGGTGAGAGAAAAGGGGCCATTTATCACC
CTGTTGGAACTGTTTTTTGTTTGGACGAAAGGCTGTGGGATGGGTGCTCA
GCCCTACAGGGTCGTGAAGCCTTGCCGCGGCTGCTATCACCCTCAACACC
CACAGGTGTTGTCGCTCTGCCCGTCCGGGGGTTTTCCGTGCAGTCGGGTG
TTCATCTGGGGGCGAAAGAAATAGGCTCACGTTGTGTTGGTGTTTCAGTT
TCTTTTACAAGCACGGCAAGCATCCTTCAACACCGCAGTCGTGTGCGAAT
GTAGACTCGTGAGTGCTTTTTTTTCAAGTAGATGGTGGTATGCGACGGGC
CCCGTGCCAGGGGGCCAAACGGCACAGAGAAAGACATGAAACCGTCGGCG
GCAGCAAGATGGCGTTGTGAGTACTGTACCGCGGTCGAGGCAGACCCCGC
TACGACGCATGTACCTATGCCCATGATTTGCTCCCTCTCCGCAGTGATCC
CAGTCAAACCGATTCGGTCGGAAGCCCTAATCCAACCCGTTCGCTGTCGT
CCGGCCGATACAGGAGAACCACTTTTTTGTCGTCGCAGGTCTCCAGACGT
GTGGCCGCTTTTAGGACTAACATTCGGTAGCATTTCTTGTTGAAGAGGTG
TAAGAGCGACATGATGTTTAAAGCAGAACACCAGGAACGGAAAATGAAAA
AGAAGAATGTCGCCGACAATTTGGAATACACGATTGTCTGTGCTTTTTAG
ATGTGCATGTGTAATGTGTAGTTGGTGAATCCTTCCCTGTTCCTTGTCCA
ACCGTTGCAGGTGCTCTCATCGGAACAAAAGGCCGAGCTGCTGAAGCGAT
ACAAGCTGAAGGACACACAGCTGCCCCGGATACAGTCGACAGACCCAGTC
GCGAGATTCTTCGGAATGCAGGTACACGTGTGGACCGGCATGCCAGAGGA
GCACACGCTTGCGCGTTTCTTTTTTCCCTTGTTGTGGTTTTCCTCTTCTC
CGCCCGTGGCACCTTTCGTGGGGTTAGGTAGATGTAGCCCACACGGCGCC
CCACCCCTTTGAGGCTGGCTTGCTAGATTGCTTCGTTTAATCGTTCCTTT
TTGCTTTTTCAACTGATGTACAGCAGTGATGAAGAACAAAACGTTGGAAA
CCCTGTTAAGCACCAAGCCTTGAGAGAGGGTACGAGGAGATCGCTATCCC
CTCATCCGCGTATTTGGCCTCTTGGAACAGCCCCAATCCTTGACTGTCAA
TACCAAAGCACGACGAACTGTGGCATATCGCCGCGCTCTCATGTGTTCGA
AAACCGATGGGAGTCTCTCCTTCTCAAGGCCCACAAACACACGTGAATTG
AGAAAAGCTGCTAAAGCTTTGGTATTTCGCATCTGCTGCTGCTTCTACTA
ATCCCCCCCCCCTCCCCGCTTCCCGCCCTCCCTGACGCCCGCTGCCACCT
GCGATTTTTTTTCTTGATTCGTGGTCTTGCATTTGGGTTGGGTTGTTCGT
TAATTTTGTATTGTATTTTGTATTTCAATAAATACTTGCACGAATGAATG
CTTTCTTTGGGCCTCATCTCGTACGTATTGGCTCGTTTTGTTGCTGTTCG
TCTGTGGGACTGACGACATTGGTCTCGCTTTTTTTTTTTTGCGAGTAGAA
AGGGCAAGTGTGCAAGATCACACGACCTAGCGAGACGGCAGGGCGATACG
TGACGTACCGCCTCTGCATTTAGATGCGTTTTTGTCTGATTAAAAAAAAA
AAAAGTGGCTGCTGTAGGCTACACGCAGCTGCGCGTGCGCGAACTAAGTC
GTTGTCGGTGCAAGACAGGCAAAGCACTGGTCTGCTGGTGGTTTGCAAAC
CAATCTGGAAACGGCAGAAACGCCGTGCACTCTCTTGACCGACTCTGTTG
CAGAGCAAGAGAAGTGACAGAATCAGTGGGCGGTACTTAGATGAATTGAT
TGCGTCTTGTGGTGTAGCATTTTGTATTGGCAGGCACGGTTAATCTTCTT
GCCTCTCTTGGCCATCAGAGCTGGGGTGGTGGTAGCAGTAGTCTGCCACG
GGCGAATTGACGATCTTCGTCGAGATTGCAAAATTGCGCCACCATTTTGC
TCGGCCAATGAGCATCGAGCCTGGCTGCGAGTTTGGCGTACCCGCTCGTC
TCCCTTAGAGTTTGGCGTAGCTTTTGTTCCGCCTCGTGCAGGCCGCGTTG
TCGCAAATGTTGCAGTTGATCGTGACTCCGGTCCGGTGTTGTATTGTCAA
TGACTTGCGTGGTATACAACGACCTGAAAGGCGCTCTCCCACGTCCCTGG
GAGCCAGCCGTGTTTGCGCCGTCCACATTGCTGCGTCACCTCGTGCTTGG
GGGTTCAGCTTCATGAATTTGCGCCAATCGAACACCCACAGACACCACTT
TTAGCGGGAACATCCTTCCGATAACTTTTGGGCTGTGTGAGAAGAGAGAT
GCGCTGCCGGCGGAAGCAACAGGAATGCCGAAACACACGCAGCGAACTTA
GTTCAGAGGCAGCAGCTCGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1284:10178..14550+

>mRNA_E-fasciculatus_F_contig1284.2144.1 ID=mRNA_E-fasciculatus_F_contig1284.2144.1|Name=mRNA_E-fasciculatus_F_contig1284.2144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1284:10178..14550+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGGCTCGGGGCCGCGGCTAACAGATGAGGGGCACAAGATCTACCG
GATTCGGCAGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGC
TGCAGGAGCACGTCTCCATGACCTCTGAGGCGTTCTTGCAGCAGTACGGG
CCCGAGCCCAACAGGCACGACTTGACGCTGCTGGTAGAAAAGATGGAGGG
CTCGGGGCCGCGGCTAACAGATGAGGGGCACAAGATCTACCGGATTCGGC
AGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGCTGCAGGAG
CACGTCTCCATGACCTCTGAGGCGTTCTTGCAGCAGTACGGGCCCGAGCC
CAACAGGCACGACTTGACGCTGCTGGTAGAAAAGGTAGACGATCCGATGG
ACCAGATCTTCGTCTTCTTTCCCGACGACGAGAAGGTCGGCGTGAAGCCG
ATCAGAAGCTACTCGGAGAAGATGCTGGAAGAGGAGGTGAAGAGGGCCAT
CATCGTCATCAAGGGCGGTATTACTCCGTTCGCCAGGTCCGCCATCCAAG
AACTCTGCGCCCAGCGAGAGGTAGACGATCCGATGGACCAGATCTTCGTC
TTCTTTCCCGACGACGAGAAGGTCGGCGTGAAGCCGATCAGAAGCTACTC
GGAGAAGATGCTGGAAGAGGAGGTGAAGAGGGCCATCATCGTCATCAAGG
GCGGTATTACTCCGTTCGCCAGGTCCGCCATCCAAGAACTCTGCGCCCAG
CGAGAGGTCCAGGTGGAAGACTTTAAAGACGCGGAGCTCATGCTGGACAT
CACGGAGCACACGCTTGTGCCGGAGCACCAGGTCCAGGTGGAAGACTTTA
AAGACGCGGAGCTCATGCTGGACATCACGGAGCACACGCTTGTGCCGGAG
CACCAGGTGCTCTCATCGGAACAAAAGGCCGAGCTGCTGAAGCGATACAA
GCTGAAGGACACACAGCTGCCCCGGATACAGTCGACAGACCCAGTCGCGA
GATTCTTCGGAATGCAGGTGCTCTCATCGGAACAAAAGGCCGAGCTGCTG
AAGCGATACAAGCTGAAGGACACACAGCTGCCCCGGATACAGTCGACAGA
CCCAGTCGCGAGATTCTTCGGAATGCAGAAAGGGCAAGTGTGCAAGATCA
CACGACCTAGCGAGACGGCAGGGCGATACGTGACGTACCGCCTCTGCATT
TAGAAAGGGCAAGTGTGCAAGATCACACGACCTAGCGAGACGGCAGGGCG
ATACGTGACGTACCGCCTCTGCATTTAG
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