mRNA_E-fasciculatus_F_contig12829.2138.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12829.2138.1
Unique NamemRNA_E-fasciculatus_F_contig12829.2138.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12829.2138.1 vs. uniprot
Match: A0A6H5KTX5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTX5_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 8.000e-131
Identity = 242/349 (69.34%), Postives = 252/349 (72.21%), Query Frame = 1 
Query:    1 MIVADTGNNRLQIFHVDELAVPRDDPGTQRDVPSSSSXXXX------------------------------------------------GRGTGEPQREASNFEQGLDDADGDDNACLLVFAGGEDAGGLRQRRVAGESEDAEGPLSQPCDVAYWRPRRTA-GKNPEKEGRKKNXXXXXXXXXXXXXXXXXXXXXNPEPPRWFWPNPEDEERARRDLFSPVSPPRTNPAPNSKPPAEFPLRGHTEKPIDLRSTTGGESSTEQLRDSSIKGGGTGEPTLGAFVVCATGLAGKLQLSFVAKTKEAEEAEHAAANGSESAESEDESVSSFSGRRSIEEQGEDDSSEGFDWMR 900
            MIVADTGNNRLQIFHV+EL  P DDPG Q DV S SS                                                    GRG GE QREA+NF QG DDA+GDD ACLLVFAG EDAGGLRQRRVAGESEDAEGPLSQPCDVAYWRPRRTA G+ PEK  RKK XXXXXXXXXXXXXXX      NPEPPRWFWPNPEDEERARR+L  P SPPRTNPAP SKPPA FP RGHT+KPID RST+  E  T Q R  SIKGGGT EPTLGAFVVCATG+AGKLQLSF+AKTKEAEEAE AAA GSE AESEDESVSSFSGRRS E +GEDDSSEGFDWMR
Sbjct:   47 MIVADTGNNRLQIFHVEELEAPPDDPGIQPDVTSFSSSSSSVSGIASMDTVDSWQTTSSSSEMPSSWERSKAPPKPPPEQDKENRPNKSGRGAGELQREAANFGQGPDDAEGDDGACLLVFAGEEDAGGLRQRRVAGESEDAEGPLSQPCDVAYWRPRRTAAGEFPEKGARKKXXXXXXXXXXXXXXXXNAVWAWNPEPPRWFWPNPEDEERARRELLLPASPPRTNPAPTSKPPAGFPPRGHTKKPIDRRSTSKDEGRTVQSRVGSIKGGGTEEPTLGAFVVCATGVAGKLQLSFIAKTKEAEEAEDAAAKGSEIAESEDESVSSFSGRRSTEGRGEDDSSEGFDWMR 395
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12829.2138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTX5_9PHAE8.000e-13169.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12829contigE-fasciculatus_F_contig12829:450..3092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-22_000680.1
Exons4
Model size1042
Cds size1041
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12829.2138.1prot_E-fasciculatus_F_contig12829.2138.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12829 450..3092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.791526-CDS-E-fasciculatus_F_contig12829:449..5911622927787.791526-CDS-E-fasciculatus_F_contig12829:449..591Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 450..591 -
1695995694.2932305-CDS-E-fasciculatus_F_contig12829:449..5911695995694.2932305-CDS-E-fasciculatus_F_contig12829:449..591Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 450..591 -
1622927787.8054218-CDS-E-fasciculatus_F_contig12829:1404..15471622927787.8054218-CDS-E-fasciculatus_F_contig12829:1404..1547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 1405..1547 -
1695995694.3026564-CDS-E-fasciculatus_F_contig12829:1404..15471695995694.3026564-CDS-E-fasciculatus_F_contig12829:1404..1547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 1405..1547 -
1622927787.8151798-CDS-E-fasciculatus_F_contig12829:2189..28251622927787.8151798-CDS-E-fasciculatus_F_contig12829:2189..2825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 2190..2825 -
1695995694.3127635-CDS-E-fasciculatus_F_contig12829:2189..28251695995694.3127635-CDS-E-fasciculatus_F_contig12829:2189..2825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 2190..2825 -
1622927787.828762-CDS-E-fasciculatus_F_contig12829:2972..30921622927787.828762-CDS-E-fasciculatus_F_contig12829:2972..3092Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 2973..3092 -
1695995694.3283956-CDS-E-fasciculatus_F_contig12829:2972..30921695995694.3283956-CDS-E-fasciculatus_F_contig12829:2972..3092Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12829 2973..3092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12829.2138.1

>prot_E-fasciculatus_F_contig12829.2138.1 ID=prot_E-fasciculatus_F_contig12829.2138.1|Name=mRNA_E-fasciculatus_F_contig12829.2138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=347bp
MIVADTGNNRLQIFHVDELAVPRDDPGTQRDVPSSSSSSSSGRGTGEPQR
EASNFEQGLDDADGDDNACLLVFAGGEDAGGLRQRRVAGESEDAEGPLSQ
PCDVAYWRPRRTAGKNPEKEGRKKNKKRKQEEKEGEQEDTTAVWAWNPEP
PRWFWPNPEDEERARRDLFSPVSPPRTNPAPNSKPPAEFPLRGHTEKPID
LRSTTGGESSTEQLRDSSIKGGGTGEPTLGAFVVCATGLAGKLQLSFVAK
TKEAEEAEHAAANGSESAESEDESVSSFSGRRSIEEQGEDDSSEGFDWMR
PTTSLADAQSGRRGPGRRGGGEYGERKQNKGGVAGGTRGERDDTSSQ
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mRNA from alignment at E-fasciculatus_F_contig12829:450..3092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12829.2138.1 ID=mRNA_E-fasciculatus_F_contig12829.2138.1|Name=mRNA_E-fasciculatus_F_contig12829.2138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2643bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12829:450..3092- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGTGGCCGACACAGGAAACAACAGGCTTCAAATTTTCCACGTGGA
TGAACTGGCGGTTCCCCGTGATGACCCCGGCACCCAGCGCGACGTCCCCT
CCTCCTCTTCTTCTTCTTCTGTGAGTGGTATCCCATCCATGGACGGCACG
GTAGGCAGCTGGCAAACAGCACCCCCAAGCTCGGAAATGCCGAGTTCCTG
GGAGCGATCTCAAGCGCCACCACCGAAGCCCCCCCCCAGACAAGACGAGA
AACGCCGGCCCCATCAGTCGGGGCGTGGAACGGGGGAGCCACAGCGGGAA
GCGTCCAACTTCGAACAGGGTCTGGATGATGCCGACGGCGATGATAATGC
CTGCTTGCTCGTGTTCGCGGGGGGGGAAGACGCCGGTGGGCTGAGGCAGC
GCCGAGTGGCGGGCGAGTCCGAAGACGCCGAGGGGCCTCTGAGCCAACCT
TGCGACGTGGCGTACTGGAGGCCGCGGCGGACGGCGGGAAAAAATCCAGA
AAAAGAAGGAAGAAAGAAGAATAAGAAGAGAAAACAGGAGGAAAAAGAAG
GCGAACAAGAAGACACTACTGCTGTCTGGGCGTGGAACCCTGAACCGCCG
AGGTGGTTTTGGCCGAACCCTGAGGACGAGGAGAGAGCAAGGAGGGATCT
GTTTTCACCCGTCTCGCCCCCGCGAACCAACCCCGCCCCAAACAGCAAGC
CTCCCGCCGAGTTTCCACTCCGAGGGCACACCGAGAAACCGATTGATCTT
CGCTCGACGACGGGTGGCGAAAGCAGCACGGAGCAGCTTCGAGACAGCAG
CATCAAGGGCGGTGGCACCGGGGAGCCCACACTTGGCGCGTTTGTGGTCT
GCGCAACAGGACTTGCCGGGAAGCTCCAACTGTCGTTTGTCGCCAAGACG
AAGGTGCTCGACAAAGTGTGCGGCTATGAGAGTGGGTGCTTTTCTTGTGG
AAGACGTCAGGGGGGGGGGGGGGGGGGGGGTTGCTCGCGTGGGAAATTCC
GCATCAAGTCTCTAGTCCTAGACAAATTTCGGGAGCAAATAGATGTCGGG
TGATTAGGTGGGCATAGACGATCGGAAGAATAGGAACGGGCCGATCGTGG
CATACGGGCTAGAGTTGGTGGCGTCGTGGCGCATGCCAGTGTGTTCATCC
GTTATGGACGATACTATTCAGCTCGCACAAGACCTTGGCAGACCCGGGAC
ATGCTCACCCACCAAATGGGCTCTCTTCTGAATATGGCGTGCTCTCTCCT
CACGATAGACGCATTCTCCACAAGCAGCTCTAGCCCTGAAGAAGAAATTG
AACCGATAACGAGCGCGGGTTTCAACCCCCTGATTGTTTCCTGCTTTTTC
TCGAAAACTTGCTTAGCGCGCTGCAATGCTGCCAGCTTCGAAGAAGCAAT
CGCACCGACAACCAGAGGGCGCGCGGTTCAACTCTCTGATAAAGGATCGT
TTCCTTCATTTTCTTAAAAACTGGTGTAGCGCGCTGCATGCTGCCGGCTT
GTACGAAAAAATACAAAAAACACGCCGCTAACCGCACACTACTAGGAAGC
CGAGGAGGCCGAACACGCCGCTGCGAATGGCAGCGAGAGCGCAGAGAGCG
AGGACGAGTCTGTTTCTTCCTTCTCGGGACGTCGGTCTATAGAAGAACAG
GGAGAAGACGACAGCTCGGAAGGCTTCGACTGGATGAGGTGTGCAGGGAC
GAGTAGTACTTAGTTCGAATCCGGAGGAATGTGTTAGCAAAAGCCCGTAC
TATCTTATTGATGCTGCACGGAGCCCCTAGTAGACGATTTATCGTCAATT
TGTTTTTGTCATGTCGTGAGGAAACAGCGCCCAGTTTGCCCAAAAAGAAA
AAGCGCGCAAGAAGGACCATCGAAGCCGATGCTTTCAATCGGCATAGTGT
AAGAGGAACCCCCTCCCGCCGTTGGCCACGCATTCTGGCGTAAGCGGTTG
TGGCGGCAACACCCCTTGGCCTGTTCCATGGGAGGGAAGCAGCCCTATGC
AGCGTCTTCTATTAACTGTCCCTTACAGTACAAACGCGTTTCCGCTCAAG
AGCCTCTTGTTTTGCCCCGAGGCCCCGGTTCTTCTTAGGCTGTACCAAGA
GTCACGGTATGAGAAGAAAACGTTTCAGGTTATTGGGGAGTCATCGGGTA
AACTATATCGCAATGGTGCCCAGTGTTCATGCTTCATTCGTAGTCGATCA
TCCAGGATGTCGACTGCATAGCAAGTGCTTTTTAAGTGGTAGAGTTTTTT
CGCTATCGTTGGCAGGCACTGACGAAGATACTTGGTGCTCCGATACTCGT
GCCACATATTTTGGTCTATCGTTTCTGTGTTTCTACACAGAAAGAAGCTT
CGGTCAACCCTCCACCCCTCTCCGCGCCAGGCGGCTGTAGAATACCCCCC
CCCCTTCCTGCGGAGACTGTTAGTTATGATACAAGCTTCTTTGACATGGC
GCTGCTGCCGCCTCTACTGCTGCTGTTGGGGAATCTTTCGGTGTCCAGCA
GACCTACGACCTCACTTGCAGATGCTCAGAGTGGTCGGCGTGGACCAGGG
CGAAGAGGAGGAGGCGAATACGGGGAGAGAAAGCAAAATAAGGGAGGGGT
GGCGGGGGGCACACGAGGCGAAAGAGACGACACTTCTTCGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12829:450..3092-

>mRNA_E-fasciculatus_F_contig12829.2138.1 ID=mRNA_E-fasciculatus_F_contig12829.2138.1|Name=mRNA_E-fasciculatus_F_contig12829.2138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2082bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12829:450..3092- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGTGGCCGACACAGGAAACAACAGGCTTCAAATTTTCCACGTGGA
TGAACTGGCGGTTCCCCGTGATGACCCCGGCACCCAGCGCGACGTCCCCT
CCTCCTCTTCTTCTTCTTCTATGATCGTGGCCGACACAGGAAACAACAGG
CTTCAAATTTTCCACGTGGATGAACTGGCGGTTCCCCGTGATGACCCCGG
CACCCAGCGCGACGTCCCCTCCTCCTCTTCTTCTTCTTCTTCGGGGCGTG
GAACGGGGGAGCCACAGCGGGAAGCGTCCAACTTCGAACAGGGTCTGGAT
GATGCCGACGGCGATGATAATGCCTGCTTGCTCGTGTTCGCGGGGGGGGA
AGACGCCGGTGGGCTGAGGCAGCGCCGAGTGGCGGGCGAGTCCGAAGACG
CCGAGGGGCCTCTGAGCCAACCTTGCGACGTGGCGTACTGGAGGCCGCGG
CGGACGGCGGGAAAAAATCCAGAAAAAGAAGGAAGAAAGAAGAATAAGAA
GAGAAAACAGGAGGAAAAAGAAGGCGAACAAGAAGACACTACTGCTGTCT
GGGCGTGGAACCCTGAACCGCCGAGGTGGTTTTGGCCGAACCCTGAGGAC
GAGGAGAGAGCAAGGAGGGATCTGTTTTCACCCGTCTCGCCCCCGCGAAC
CAACCCCGCCCCAAACAGCAAGCCTCCCGCCGAGTTTCCACTCCGAGGGC
ACACCGAGAAACCGATTGATCTTCGCTCGACGACGGGTGGCGAAAGCAGC
ACGGAGCAGCTTCGAGACAGCAGCATCAAGGGCGGTGGCACCGGGGAGCC
CACACTTGGCGCGTTTGTGGTCTGCGCAACAGGACTTGCCGGGAAGCTCC
AACTGTCGTTTGTCGCCAAGACGAAGTCGGGGCGTGGAACGGGGGAGCCA
CAGCGGGAAGCGTCCAACTTCGAACAGGGTCTGGATGATGCCGACGGCGA
TGATAATGCCTGCTTGCTCGTGTTCGCGGGGGGGGAAGACGCCGGTGGGC
TGAGGCAGCGCCGAGTGGCGGGCGAGTCCGAAGACGCCGAGGGGCCTCTG
AGCCAACCTTGCGACGTGGCGTACTGGAGGCCGCGGCGGACGGCGGGAAA
AAATCCAGAAAAAGAAGGAAGAAAGAAGAATAAGAAGAGAAAACAGGAGG
AAAAAGAAGGCGAACAAGAAGACACTACTGCTGTCTGGGCGTGGAACCCT
GAACCGCCGAGGTGGTTTTGGCCGAACCCTGAGGACGAGGAGAGAGCAAG
GAGGGATCTGTTTTCACCCGTCTCGCCCCCGCGAACCAACCCCGCCCCAA
ACAGCAAGCCTCCCGCCGAGTTTCCACTCCGAGGGCACACCGAGAAACCG
ATTGATCTTCGCTCGACGACGGGTGGCGAAAGCAGCACGGAGCAGCTTCG
AGACAGCAGCATCAAGGGCGGTGGCACCGGGGAGCCCACACTTGGCGCGT
TTGTGGTCTGCGCAACAGGACTTGCCGGGAAGCTCCAACTGTCGTTTGTC
GCCAAGACGAAGGAAGCCGAGGAGGCCGAACACGCCGCTGCGAATGGCAG
CGAGAGCGCAGAGAGCGAGGACGAGTCTGTTTCTTCCTTCTCGGGACGTC
GGTCTATAGAAGAACAGGGAGAAGACGACAGCTCGGAAGGCTTCGACTGG
ATGAGGAAGCCGAGGAGGCCGAACACGCCGCTGCGAATGGCAGCGAGAGC
GCAGAGAGCGAGGACGAGTCTGTTTCTTCCTTCTCGGGACGTCGGTCTAT
AGAAGAACAGGGAGAAGACGACAGCTCGGAAGGCTTCGACTGGATGAGAC
CTACGACCTCACTTGCAGATGCTCAGAGTGGTCGGCGTGGACCAGGGCGA
AGAGGAGGAGGCGAATACGGGGAGAGAAAGCAAAATAAGGGAGGGGTGGC
GGGGGGCACACGAGGCGAAAGAGACGACACTTCTTCGCAGACCTACGACC
TCACTTGCAGATGCTCAGAGTGGTCGGCGTGGACCAGGGCGAAGAGGAGG
AGGCGAATACGGGGAGAGAAAGCAAAATAAGGGAGGGGTGGCGGGGGGCA
CACGAGGCGAAAGAGACGACACTTCTTCGCAG
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