mRNA_E-fasciculatus_F_contig12826.2136.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12826.2136.1
Unique NamemRNA_E-fasciculatus_F_contig12826.2136.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A6H5L128_9PHAE (COX assembly mitochondrial protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L128_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.330e-38
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    7 QEVKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADFQKELELRRKELDEEQQQGGR 231
            +EVK+LMACHEENPYGKFFGACND KLALDSCFV EKEEKRRKN+A+ARRFDA FQKELELRRKEL++EQQQ GR
Sbjct:   14 EEVKMLMACHEENPYGKFFGACNDLKLALDSCFVLEKEEKRRKNLAKARRFDAGFQKELELRRKELEQEQQQAGR 88
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: F0Y773_AURAN (COX assembly mitochondrial protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y773_AURAN)

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-15
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADFQKELELR 192
            V +L+ CH+ENPYGKF+GACND K A+D CF  EKEEKRR N  + R F+ +++K+ + R
Sbjct:   16 VDLLVKCHDENPYGKFWGACNDEKAAMDWCFKEEKEEKRRANFEKTRSFNEEWRKKQDAR 75
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A8J2WQW2_9STRA (COX assembly mitochondrial protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQW2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.380e-14
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDA 165
            V  L+ CH+ N YGKF+GACND K A+D+CF  EK+EKRR+N+ +AR FDA
Sbjct:   16 VDALVECHDANVYGKFWGACNDQKAAMDACFKAEKDEKRRENLRKARAFDA 66
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A0P1AB85_PLAHL (COX assembly mitochondrial protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB85_PLAHL)

HSP 1 Score: 67.0 bits (162), Expect = 6.900e-13
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 EVKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADFQKELELRR 195
            E+K L+ CH +NPY KFFGACND K ALD CF  EK   R +N+  A+  DA  +++++ RR
Sbjct:   15 EIKALLDCHNDNPYAKFFGACNDVKSALDQCFKKEKIRIRSENLRHAKASDAYVRRKMQERR 76
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: K3WST6_GLOUD (COX assembly mitochondrial protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST6_GLOUD)

HSP 1 Score: 65.9 bits (159), Expect = 2.020e-12
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADFQKELELRR 195
            +  L  CHEENP  KFFGACN+ K+ALD CF  EKE KR +N+ +AR  DA  +++++ RR
Sbjct:   16 IMALNLCHEENPRMKFFGACNEAKVALDKCFKKEKERKRDENLRRARASDAYVRQKMKERR 76
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: K8YW82_NANGC (COX assembly mitochondrial protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YW82_NANGC)

HSP 1 Score: 62.4 bits (150), Expect = 3.310e-11
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADF-----QKELELRRK 198
            +  L+ CH+E+P+ KF+G CN+ K ALD CF  EKE++RR N A A R D  +     QKE ELR K
Sbjct:    3 IDALLLCHQEHPWAKFWGECNEQKWALDKCFRMEKEQRRRANFAVASRDDGAWSQIVKQKEAELRAK 69
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A024TQ03_9STRA (COX assembly mitochondrial protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQ03_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.720e-11
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADF 171
            V  L  CH ENPYGKF GACND K AL+ CF  E   +R+ NM +AR F+ ++
Sbjct:   16 VDALRECHAENPYGKFVGACNDMKAALNECFAKENAFRRKVNMDKARAFNKEW 68
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A0G4J3S4_PLABS (COX assembly mitochondrial protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J3S4_PLABS)

HSP 1 Score: 62.0 bits (149), Expect = 6.010e-11
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADF 171
            +  L  CH+E    KFFGACNDFK ALD C   EK+E+R +N  +AR FD ++
Sbjct:   19 IVALATCHKERSIAKFFGACNDFKAALDQCMRSEKKERRERNRREAREFDMNW 71
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A835ZCC5_9STRA (COX assembly mitochondrial protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-10
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 MTQE-VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFD 162
            M QE V+ L+ CH+ENPYGKF GACN+ K ALD CF  EK  + + NM  A+  D
Sbjct:   11 MCQEMVEQLVKCHDENPYGKFLGACNEAKTALDKCFRQEKIARYKANMESAKAMD 65
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BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Match: A0A3P3YF74_PLABS (Mur_ligase_M domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YF74_PLABS)

HSP 1 Score: 62.0 bits (149), Expect = 2.010e-9
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 VKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQARRFDADF 171
            +  L  CH+E    KFFGACNDFK ALD C   EK+E+R +N  +AR FD ++
Sbjct:  112 IVALATCHKERSIAKFFGACNDFKAALDQCMRSEKKERRERNRREAREFDMNW 164
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12826.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L128_9PHAE1.330e-3886.67COX assembly mitochondrial protein n=1 Tax=Ectocar... [more]
F0Y773_AURAN1.500e-1555.00COX assembly mitochondrial protein n=1 Tax=Aureoco... [more]
A0A8J2WQW2_9STRA5.380e-1460.78COX assembly mitochondrial protein n=1 Tax=Pelagom... [more]
A0A0P1AB85_PLAHL6.900e-1350.00COX assembly mitochondrial protein n=1 Tax=Plasmop... [more]
K3WST6_GLOUD2.020e-1252.46COX assembly mitochondrial protein n=1 Tax=Globisp... [more]
K8YW82_NANGC3.310e-1149.25COX assembly mitochondrial protein n=2 Tax=Monodop... [more]
A0A024TQ03_9STRA5.720e-1152.83COX assembly mitochondrial protein n=1 Tax=Aphanom... [more]
A0A0G4J3S4_PLABS6.010e-1150.94COX assembly mitochondrial protein n=1 Tax=Plasmod... [more]
A0A835ZCC5_9STRA1.060e-1054.55COX assembly mitochondrial protein n=1 Tax=Tribone... [more]
A0A3P3YF74_PLABS2.010e-950.94Mur_ligase_M domain-containing protein n=2 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12826contigE-fasciculatus_F_contig12826:2102..3006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog36331.EPrPI00000014749
KEGG koko:K18172
EggNOG free text desc.CNPV141 HAL3-like domain protein (ISS). Source PGD
EggNOG OGs1MI5Q@121069,2CZWX@1,2SBZE@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome c oxidase biogenesis protein Cmc1-like
Ec32 orthologEc-15_002730.1
Exons2
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.6901197-CDS-E-fasciculatus_F_contig12826:2101..22271622927787.6901197-CDS-E-fasciculatus_F_contig12826:2101..2227Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12826 2102..2227 -
1695995694.2269845-CDS-E-fasciculatus_F_contig12826:2101..22271695995694.2269845-CDS-E-fasciculatus_F_contig12826:2101..2227Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12826 2102..2227 -
1622927787.702826-CDS-E-fasciculatus_F_contig12826:2898..30061622927787.702826-CDS-E-fasciculatus_F_contig12826:2898..3006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12826 2899..3006 -
1695995694.2416744-CDS-E-fasciculatus_F_contig12826:2898..30061695995694.2416744-CDS-E-fasciculatus_F_contig12826:2898..3006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12826 2899..3006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12826.2136.1prot_E-fasciculatus_F_contig12826.2136.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12826 2102..3006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12826.2136.1

>prot_E-fasciculatus_F_contig12826.2136.1 ID=prot_E-fasciculatus_F_contig12826.2136.1|Name=mRNA_E-fasciculatus_F_contig12826.2136.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
MTQEVKVLMACHEENPYGKFFGACNDFKLALDSCFVHEKEEKRRKNMAQA
RRFDADFQKELELRRKELDEEQQQGGR*
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mRNA from alignment at E-fasciculatus_F_contig12826:2102..3006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12826.2136.1 ID=mRNA_E-fasciculatus_F_contig12826.2136.1|Name=mRNA_E-fasciculatus_F_contig12826.2136.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=905bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12826:2102..3006- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCCAGGAGGTGAAGGTGCTGATGGCGTGCCACGAGGAAAACCCGTA
CGGAAAGTTCTTTGGGGCGTGCAACGACTTCAAGCTCGCGCTCGATTCGT
GCTTTGTGGTGAGCAACAGCAGTTGTAGATAGCAGGCGATGATGGAAGAA
GGAAGAGAAACGGAGCTCATGCATGTATCCATGCGAAAACTTTGCCCAAG
GGCCCCGGGGACGTGAAAAATTTGACGTTTGTTTGGTCCCACCTACGCGT
CGTGATGGTTTCTTTCATTCATCGGTCGGTGCCATACGAACAAACACACA
CGCACACGAAAGCTTGCTCGCGTTTTACATCCCGCCACGTCTGTTCATTG
GTCAGCTCTTTAGCCCTCCTGTGTCAGGAGCAGAAGAAGCACACACACAT
ACTCACACATGCACATGCACACACACAAACGCCCATGCTTCGTTCACGAA
GCTCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCCACCCCCCC
CCCCCTCGTTCCTTCTACCCATCCGACCGGCCCCTTCCCTCTTTCCGCCT
TGCCATGCTGTGCAGAACGCACGACTCTCAAACCTCGAGCATGCTGTTTT
GGCGACGGTACATGTATCCGGAACGTATCGTATCCGGTCTACAGCAGTGG
GTAAACAACAGTTAGATTTTGGGTTGCAGTCGTTTTTTTTTTTCCTCGAC
GATCCCTCTTTTGTGATCAAACATTGGGGCCACCATCCCCTCTCTGCGTC
TACTCATGTTTCAATTTCCATGCACGCAGCACGAAAAGGAGGAGAAGCGT
CGGAAGAACATGGCCCAGGCCCGAAGGTTCGACGCCGACTTTCAGAAGGA
GCTCGAACTCAGGAGAAAGGAGCTAGATGAGGAACAGCAGCAAGGGGGAC
GGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12826:2102..3006-

>mRNA_E-fasciculatus_F_contig12826.2136.1 ID=mRNA_E-fasciculatus_F_contig12826.2136.1|Name=mRNA_E-fasciculatus_F_contig12826.2136.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12826:2102..3006- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCCAGGAGGTGAAGGTGCTGATGGCGTGCCACGAGGAAAACCCGTA
CGGAAAGTTCTTTGGGGCGTGCAACGACTTCAAGCTCGCGCTCGATTCGT
GCTTTGTGATGACCCAGGAGGTGAAGGTGCTGATGGCGTGCCACGAGGAA
AACCCGTACGGAAAGTTCTTTGGGGCGTGCAACGACTTCAAGCTCGCGCT
CGATTCGTGCTTTGTGCACGAAAAGGAGGAGAAGCGTCGGAAGAACATGG
CCCAGGCCCGAAGGTTCGACGCCGACTTTCAGAAGGAGCTCGAACTCAGG
AGAAAGGAGCTAGATGAGGAACAGCAGCAAGGGGGACGGTAGCACGAAAA
GGAGGAGAAGCGTCGGAAGAACATGGCCCAGGCCCGAAGGTTCGACGCCG
ACTTTCAGAAGGAGCTCGAACTCAGGAGAAAGGAGCTAGATGAGGAACAG
CAGCAAGGGGGACGGTAG
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