mRNA_E-fasciculatus_F_contig12823.2135.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12823.2135.1
Unique NamemRNA_E-fasciculatus_F_contig12823.2135.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12823.2135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12823contigE-fasciculatus_F_contig12823:1306..3052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size527
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12823.2135.1prot_E-fasciculatus_F_contig12823.2135.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12823 1456..2909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.6225305-UTR-E-fasciculatus_F_contig12823:1305..14551622927787.6225305-UTR-E-fasciculatus_F_contig12823:1305..1455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12823 1306..1455 -
1695995694.17636-UTR-E-fasciculatus_F_contig12823:1305..14551695995694.17636-UTR-E-fasciculatus_F_contig12823:1305..1455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12823 1306..1455 -
1622927787.6506405-UTR-E-fasciculatus_F_contig12823:2909..30521622927787.6506405-UTR-E-fasciculatus_F_contig12823:2909..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12823 2910..3052 -
1695995694.2143452-UTR-E-fasciculatus_F_contig12823:2909..30521695995694.2143452-UTR-E-fasciculatus_F_contig12823:2909..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12823 2910..3052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.6321952-CDS-E-fasciculatus_F_contig12823:1455..15991622927787.6321952-CDS-E-fasciculatus_F_contig12823:1455..1599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12823 1456..1599 -
1695995694.188138-CDS-E-fasciculatus_F_contig12823:1455..15991695995694.188138-CDS-E-fasciculatus_F_contig12823:1455..1599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12823 1456..1599 -
1622927787.6410973-CDS-E-fasciculatus_F_contig12823:2819..29091622927787.6410973-CDS-E-fasciculatus_F_contig12823:2819..2909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12823 2820..2909 -
1695995694.205139-CDS-E-fasciculatus_F_contig12823:2819..29091695995694.205139-CDS-E-fasciculatus_F_contig12823:2819..2909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12823 2820..2909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12823.2135.1

>prot_E-fasciculatus_F_contig12823.2135.1 ID=prot_E-fasciculatus_F_contig12823.2135.1|Name=mRNA_E-fasciculatus_F_contig12823.2135.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
MIRGGEGSFASIAMKEGSFEPPGAQGLLYRRSMSFTGTAQDDIYWGKETF
ACFLCPMLIGHEAPDCVCSTRREEASP*
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mRNA from alignment at E-fasciculatus_F_contig12823:1306..3052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12823.2135.1 ID=mRNA_E-fasciculatus_F_contig12823.2135.1|Name=mRNA_E-fasciculatus_F_contig12823.2135.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1747bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12823:1306..3052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGATTGCTGACATTGCTGTCGAGCAGCGCGCGTTCGAGACCGCCCGCCG
TAACATGTCTGACGACGTTTCCCAAGCCGATCAACTGGCAAGTTGGTGAT
GTGATCATAGCCTCCAAGAAGAGAAGCTCAGGCAGAAGATGGCATGATTC
GCGGCGGAGAAGGCTCATTTGCCTCGATTGCGATGAAGGAAGGCAGTTTT
GAGCCGCCGGGGGCGCAAGGGCTGCTGTACAGGGTGAGAACCTAGGCAGT
GGAGGAGGCCTGCTGCATACTGCGTAGTTTGACACATATGCTCGCCGCAG
GCAGTCACGCGAACAGATAAAACACAGCGCAGATATCGCTCACGTTTTTT
CGAATACGGGGGATTGTTGAAGTGTTGCAAGAACAATCCCGGAAAAAAGA
GCTGGCTACTGGCTACGGTTGTTTAGTCGTACCAGGCGACTGCTGTGTCT
TGTGCAGTGTTGGCTACGGTTGAACGTTGCATTCTCTTGAACCATGGACA
TGGTTTACAGCAGTAATAGCATAGCATTTCGAAAAGCCTCGGGAAGGTGA
ACGGTCTCATTTCCACCAGCTGCCAAGAGCGAGTTTGTGGAGGTCACATG
CGTATCATCATGTACCGTAGGTGACACAAGATACCACACGCCCGTGACCG
ATTTTCAAAGCTCGATTGCTCCACCGTTGAAAGAGTGCCCGCGCCGAAAT
AGCGGCGTCCCAGCCGTCTCGTCGAGATCTTTCCGACAACGTATCGATTG
GATTTGGCACCCACGTCTTTCGTGCAGCAGTCGATCGTTGAAAATCGGTC
CAGGGGGTGTGGTACCTTGTGTCACCTACGGTACATCACGTCAGCTAAGG
GGTAGCACCACTTAAAATGTGTCTACCGTAGGTGATACAAAACACCACAC
CCCCTGGATCGATTTTTATAGCTCGATTGCTCCGCATCAAGTAGAAAGAG
TGCTGATGCCGAAACTGGCGGCGTTGGAATCGAAGCACGCTACAGCAGCG
CATCCACTGCTGCAACCCGTGTGTCCTCGTGGACTATGGTACCTTTCTAC
CTTGATGCCTGAGAAGTCAATGGGATCAATCCTGGGAGATCGGAAGATCT
CGGGAAGATCAAATGGCAACTGTTGAGAGAGGTTTCCAAGGTTCCATGTT
GAGAGGGTGAAACTGCTGTCCATCACAGACAGTGGGATGTCGAGGCGCGC
AGCCTGTTGTCGGGGTTGAGTAATTGTAGTGTTCGCAAGCCTGTTGCTTG
ACCTCGGCGTTGTTTTTTTCCTTCATGTCTCAATTTTTCTAACGCGCGCG
GAACTATTGATTTCGCTGGAGCTCCAGCGGGCATATCCAGACACGACGGC
GGGGGCTTGTCCAGAAATCGACGCGACGAATGAATGTCAACCAAACTGCT
GTACAATTCCGTTGCCTGTTGGTCATTGCGTCAACTGTTGCATCCAATTC
CAGCGGAGCATGTCCTTCACGGGGACTGCGCAAGACGACATTTATTGGGG
GAAGGAGACATTCGCTTGCTTCTTGTGCCCGATGCTGATCGGTCACGAGG
CCCCCGATTGCGTATGCTCGACCAGAAGGGAGGAGGCAAGTCCTTGACGG
AAGGCCCGGTGTCGTCTACCCCCACGGTGACGGCAGCAGGTGGGTCGGCA
AAGAGCAGCCGGAGGGCATTGGCGCAAGACCTGAGCCTTACATTCGCGAC
TTGAAGGGAGACGGGACGGGTTAACACGTGTCATGAGGTAGTGGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12823:1306..3052-

>mRNA_E-fasciculatus_F_contig12823.2135.1 ID=mRNA_E-fasciculatus_F_contig12823.2135.1|Name=mRNA_E-fasciculatus_F_contig12823.2135.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12823:1306..3052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATTCGCGGCGGAGAAGGCTCATTTGCCTCGATTGCGATGAAGGAAGG
CAGTTTTGAGCCGCCGGGGGCGCAAGGGCTGCTGTACAGGATGATTCGCG
GCGGAGAAGGCTCATTTGCCTCGATTGCGATGAAGGAAGGCAGTTTTGAG
CCGCCGGGGGCGCAAGGGCTGCTGTACAGGCGGAGCATGTCCTTCACGGG
GACTGCGCAAGACGACATTTATTGGGGGAAGGAGACATTCGCTTGCTTCT
TGTGCCCGATGCTGATCGGTCACGAGGCCCCCGATTGCGTATGCTCGACC
AGAAGGGAGGAGGCAAGTCCTTGACGGAGCATGTCCTTCACGGGGACTGC
GCAAGACGACATTTATTGGGGGAAGGAGACATTCGCTTGCTTCTTGTGCC
CGATGCTGATCGGTCACGAGGCCCCCGATTGCGTATGCTCGACCAGAAGG
GAGGAGGCAAGTCCTTGA
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