mRNA_E-fasciculatus_F_contig12821.2133.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12821.2133.1
Unique NamemRNA_E-fasciculatus_F_contig12821.2133.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12821.2133.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 5.300e-38
Identity = 90/130 (69.23%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:  199 PVSARVGPGGASASRLVRYLTRECDRVRGITAHSVVERNLDALMLELRSWSAGLGSAPAGGPFGAPAVSGGTGEGFHDKGVRLLPAGSNGXXXXXXXXXAEVVLGPAAGGPTGSPPASEGKASVPCGGKA 588
            PVS R+GPGG SASRLVRYLTRECD+VRGIT+H VVERNLDALM ELRSWSAGLGSA AGG F APAVS  TGE F  KGVRLLPAG  G          E   G  +G P G P A+ GKASV CGGKA
Sbjct:  211 PVSVRLGPGGPSASRLVRYLTRECDKVRGITSHPVVERNLDALMSELRSWSAGLGSAAAGGRFSAPAVS--TGEVFQSKGVRLLPAGPVGGG-------TEAGGGATSGRPGGKPLANGGKASVSCGGKA 331
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12821.2133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE5.300e-3869.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12821contigE-fasciculatus_F_contig12821:700..2174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002980.1
Hectar predicted targeting categoryother localisation
Exons2
Model size773
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.4785178-CDS-E-fasciculatus_F_contig12821:701..11971622927787.4785178-CDS-E-fasciculatus_F_contig12821:701..1197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12821 702..1197 -
1695995694.0743268-CDS-E-fasciculatus_F_contig12821:701..11971695995694.0743268-CDS-E-fasciculatus_F_contig12821:701..1197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12821 702..1197 -
1622927787.4909415-CDS-E-fasciculatus_F_contig12821:1899..21741622927787.4909415-CDS-E-fasciculatus_F_contig12821:1899..2174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12821 1900..2174 -
1695995694.0883467-CDS-E-fasciculatus_F_contig12821:1899..21741695995694.0883467-CDS-E-fasciculatus_F_contig12821:1899..2174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12821 1900..2174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12821.2133.1prot_E-fasciculatus_F_contig12821.2133.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12821 702..2174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12821.2133.1

>prot_E-fasciculatus_F_contig12821.2133.1 ID=prot_E-fasciculatus_F_contig12821.2133.1|Name=mRNA_E-fasciculatus_F_contig12821.2133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
QKEHEEEEEEEEEEGRLPLSVLVAAARSLRTLSASAVAIEKSVRISSASA
CPTPPAGGGGGGSGSGPVSARVGPGGASASRLVRYLTRECDRVRGITAHS
VVERNLDALMLELRSWSAGLGSAPAGGPFGAPAVSGGTGEGFHDKGVRLL
PAGSNGGGGGGGGGGAEVVLGPAAGGPTGSPPASEGKASVPCGGKAGSVA
DGGGGRGGEGGQHSQQFPAGKTVPSLRPRQPLSIPRPPMLLLPLEGAAAA
AAGVGKP
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mRNA from alignment at E-fasciculatus_F_contig12821:700..2174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12821.2133.1 ID=mRNA_E-fasciculatus_F_contig12821.2133.1|Name=mRNA_E-fasciculatus_F_contig12821.2133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1475bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12821:700..2174- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAAAGAACATGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGCGGTT
ACCGCTGTCAGTTCTCGTGGCGGCCGCCAGATCGCTGCGTACGCTGAGCG
CTAGCGCGGTGGCGATAGAGAAATCGGTCAGGATTTCCTCTGCATCTGCA
TGCCCCACCCCCCCCGCTGGTGGCGGCGGCGGCGGCAGCGGCAGCGGCCC
CGTGTCGGCGAGGGTGGGCCCGGGGGGGGCGTCGGCGTCGAGGCTGGTGC
GGTACCTAACACGGGAGTGCGACAGGTGAGCTCCGCCGTTTTTTTTGTTT
TTGTTTATACCCCACCCAGCTGGGACGGCGACGTTAGTGTTCGGTTGGGT
GGTTTCGAGTCAAGCTCCTGCGCGGCGGGTCTCATCGAGTGCTTGGGAGG
TGTTTACTGCGTCCTTTTGATAGGCGGCACTTGAAGCACGTAACATAGAA
GCAACTCTTTCTCCTTTTGGTCAGGAGCCGTCTGAATTGCTCCCTGTTTT
CTTTTTGAGGGTGGTGTGGTATTGGCGGCGCAGCGATTAGCTCTGGCTAC
GTTTCGGTGTCATTTCTGGCATTTTACAGGCCCTCCTTCCCGTTCGTCCT
CCGGGCCGGTGCCTCTTGTGGGAGGTCTGCCGGTTGGCAAGATGTTGTTG
TGGTTGACGATCCTGTTCCAGCATGGTAGTACTGCGTTTGAGTGCTGTTG
ATACCTTCGGTTCGCTCACATGCCGACGAGACGGGAAGGGACATCGCTAG
GAATGGGAAAGCGTTTCGTTTTGGAGCCCACTTTGGCAAAGAAGGAAGGA
ACGATTTTGCCGTCGGTGATGGAATGGGATGACTGCTCCGTCCTCGCGTG
CAAAACATTAGTACCCCCCACTCCTCCCCCTACCAATCGGTGGTTGAGTA
CTCCCCTTTCGAGGACACGTGGTCTAAACGTCTAAGGCATGCAAAACATG
ACACCCCCCCCTCCCCCCCCCATCCAGGGTTCGCGGGATCACGGCCCACT
CGGTGGTGGAGCGAAACCTCGACGCCCTCATGCTCGAGCTCAGGTCTTGG
TCTGCCGGGCTAGGCAGCGCCCCCGCTGGCGGTCCTTTCGGCGCTCCTGC
GGTCAGCGGCGGCACGGGCGAGGGTTTCCACGACAAGGGCGTTCGATTGT
TGCCGGCCGGGTCCAACGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGCT
GAGGTGGTATTAGGCCCGGCGGCGGGGGGACCAACAGGAAGTCCTCCTGC
CAGCGAGGGCAAGGCCTCCGTGCCTTGCGGGGGGAAGGCCGGGTCTGTTG
CTGACGGCGGCGGGGGCCGGGGGGGCGAGGGCGGCCAGCATTCACAGCAG
TTCCCGGCCGGGAAAACGGTACCGTCTTTGAGGCCGCGACAGCCGTTGTC
CATTCCCCGCCCGCCGATGCTTCTGTTACCCCTTGAGGGAGCGGCGGCGG
CAGCGGCGGGAGTAGGGAAGCCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12821:700..2174-

>mRNA_E-fasciculatus_F_contig12821.2133.1 ID=mRNA_E-fasciculatus_F_contig12821.2133.1|Name=mRNA_E-fasciculatus_F_contig12821.2133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12821:700..2174- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAAAGAACATGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGCGGTT
ACCGCTGTCAGTTCTCGTGGCGGCCGCCAGATCGCTGCGTACGCTGAGCG
CTAGCGCGGTGGCGATAGAGAAATCGGTCAGGATTTCCTCTGCATCTGCA
TGCCCCACCCCCCCCGCTGGTGGCGGCGGCGGCGGCAGCGGCAGCGGCCC
CGTGTCGGCGAGGGTGGGCCCGGGGGGGGCGTCGGCGTCGAGGCTGGTGC
GGTACCTAACACGGGAGTGCGACAGCAGAAAGAACATGAGGAGGAGGAGG
AGGAGGAAGAGGAGGAGGGGCGGTTACCGCTGTCAGTTCTCGTGGCGGCC
GCCAGATCGCTGCGTACGCTGAGCGCTAGCGCGGTGGCGATAGAGAAATC
GGTCAGGATTTCCTCTGCATCTGCATGCCCCACCCCCCCCGCTGGTGGCG
GCGGCGGCGGCAGCGGCAGCGGCCCCGTGTCGGCGAGGGTGGGCCCGGGG
GGGGCGTCGGCGTCGAGGCTGGTGCGGTACCTAACACGGGAGTGCGACAG
GGTTCGCGGGATCACGGCCCACTCGGTGGTGGAGCGAAACCTCGACGCCC
TCATGCTCGAGCTCAGGTCTTGGTCTGCCGGGCTAGGCAGCGCCCCCGCT
GGCGGTCCTTTCGGCGCTCCTGCGGTCAGCGGCGGCACGGGCGAGGGTTT
CCACGACAAGGGCGTTCGATTGTTGCCGGCCGGGTCCAACGGGGGCGGCG
GCGGCGGCGGCGGCGGCGGCGCTGAGGTGGTATTAGGCCCGGCGGCGGGG
GGACCAACAGGAAGTCCTCCTGCCAGCGAGGGCAAGGCCTCCGTGCCTTG
CGGGGGGAAGGCCGGGTCTGTTGCTGACGGCGGCGGGGGCCGGGGGGGCG
AGGGCGGCCAGCATTCACAGCAGTTCCCGGCCGGGAAAACGGTACCGTCT
TTGAGGCCGCGACAGCCGTTGTCCATTCCCCGCCCGCCGATGCTTCTGTT
ACCCCTTGAGGGAGCGGCGGCGGCAGCGGCGGGAGTAGGGAAGCCGGGTT
CGCGGGATCACGGCCCACTCGGTGGTGGAGCGAAACCTCGACGCCCTCAT
GCTCGAGCTCAGGTCTTGGTCTGCCGGGCTAGGCAGCGCCCCCGCTGGCG
GTCCTTTCGGCGCTCCTGCGGTCAGCGGCGGCACGGGCGAGGGTTTCCAC
GACAAGGGCGTTCGATTGTTGCCGGCCGGGTCCAACGGGGGCGGCGGCGG
CGGCGGCGGCGGCGGCGCTGAGGTGGTATTAGGCCCGGCGGCGGGGGGAC
CAACAGGAAGTCCTCCTGCCAGCGAGGGCAAGGCCTCCGTGCCTTGCGGG
GGGAAGGCCGGGTCTGTTGCTGACGGCGGCGGGGGCCGGGGGGGCGAGGG
CGGCCAGCATTCACAGCAGTTCCCGGCCGGGAAAACGGTACCGTCTTTGA
GGCCGCGACAGCCGTTGTCCATTCCCCGCCCGCCGATGCTTCTGTTACCC
CTTGAGGGAGCGGCGGCGGCAGCGGCGGGAGTAGGGAAGCCG
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