mRNA_E-fasciculatus_F_contig1282.2130.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1282.2130.1
Unique NamemRNA_E-fasciculatus_F_contig1282.2130.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1282.2130.1 vs. uniprot
Match: A0A6H5JWN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.740e-28
Identity = 109/157 (69.43%), Postives = 117/157 (74.52%), Query Frame = 1 
Query:    1 SALTGGGSSGLTFEAFSAENDGGEXXXXXXXXXXXXXXXTAET-GGEEITPPAVSAIQSAAVEELAGAQDQAIAASKAAEDXXXXXXXXXXXXXXXAVEAGAAALAEGAAPVKRGLMKGAAFGMEPAKKTGEDAGAEKEGLSDGVVEGTAGE--DDA 462
            SA+TGGGSSGLTFE+FSAENDG E XXXXXXXXXXXXXX     GGEE TPPAVSA+Q      LAG QD+AIAASKAA+        XXXXXXXX       ALAEGAAPVKRGL+KGAAFGMEPA+K G DA  EK+G SDGV EG  GE  DDA
Sbjct:  420 SAVTGGGSSGLTFESFSAENDGREGXXXXXXXXXXXXXXXXXXXGGEESTPPAVSAMQ------LAGVQDKAIAASKAADAAVATAGDXXXXXXXXXXXXXXXALAEGAAPVKRGLVKGAAFGMEPARKVGGDA--EKQGFSDGVAEGMDGEGKDDA 568
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BLAST of mRNA_E-fasciculatus_F_contig1282.2130.1 vs. uniprot
Match: D8LEA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 9.370e-9
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:  307 ALAEGAAPVKRGLMKGAAFGMEPAKKTGEDAGAEKEGLSDGVVEGTAGE 453
            ALAE AAPVKRGL+KGAAFGMEPAKK G DA  E++GL DG+ EG  GE
Sbjct:  338 ALAEDAAPVKRGLVKGAAFGMEPAKKAGGDA--EEKGLFDGIAEGMDGE 384
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1282.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWN8_9PHAE4.740e-2869.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEA4_ECTSI9.370e-973.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1282contigE-fasciculatus_F_contig1282:2..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog2880.D8LEA4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007275,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009791,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0055035,GO:0061024,GO:0071840,GO:0090351
EggNOG free text desc.membrane protein TERC
EggNOG OGs2QQNF@2759,COG0861@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIntegral membrane protein TerC, riboswitch-linked
Ec32 orthologEc-00_001500.1
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.118278-CDS-E-fasciculatus_F_contig1282:1..4661622927787.118278-CDS-E-fasciculatus_F_contig1282:1..466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1282 2..466 +
1695995693.8241627-CDS-E-fasciculatus_F_contig1282:1..4661695995693.8241627-CDS-E-fasciculatus_F_contig1282:1..466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1282 2..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1282.2130.1prot_E-fasciculatus_F_contig1282.2130.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1282 2..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1282.2130.1

>prot_E-fasciculatus_F_contig1282.2130.1 ID=prot_E-fasciculatus_F_contig1282.2130.1|Name=mRNA_E-fasciculatus_F_contig1282.2130.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=155bp
SALTGGGSSGLTFEAFSAENDGGEGGGGGGFADAAAAALTAETGGEEITP
PAVSAIQSAAVEELAGAQDQAIAASKAAEDAAVATAGDAADDAAAAVEAG
AAALAEGAAPVKRGLMKGAAFGMEPAKKTGEDAGAEKEGLSDGVVEGTAG
EDDA*
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mRNA from alignment at E-fasciculatus_F_contig1282:2..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1282.2130.1 ID=mRNA_E-fasciculatus_F_contig1282.2130.1|Name=mRNA_E-fasciculatus_F_contig1282.2130.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=465bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1282:2..466+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCCCTGACCGGCGGCGGCTCCTCCGGGTTGACATTCGAAGCATTCTC
AGCCGAAAACGACGGCGGGGAAGGAGGGGGCGGCGGAGGGTTCGCCGATG
CCGCAGCGGCCGCCTTGACCGCTGAAACCGGTGGGGAGGAGATCACCCCC
CCGGCGGTGTCAGCGATACAGTCGGCAGCGGTGGAGGAGTTGGCGGGGGC
GCAAGACCAAGCGATCGCCGCATCTAAGGCTGCGGAGGACGCGGCTGTAG
CTACGGCGGGGGATGCCGCCGATGATGCGGCTGCAGCGGTGGAGGCGGGG
GCAGCAGCGTTGGCCGAAGGCGCGGCGCCCGTGAAGAGGGGCCTGATGAA
AGGGGCTGCTTTTGGGATGGAGCCGGCCAAGAAGACCGGGGAGGATGCGG
GTGCGGAGAAGGAAGGGCTCTCTGACGGAGTTGTGGAGGGCACGGCCGGC
GAGGATGACGCTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1282:2..466+

>mRNA_E-fasciculatus_F_contig1282.2130.1 ID=mRNA_E-fasciculatus_F_contig1282.2130.1|Name=mRNA_E-fasciculatus_F_contig1282.2130.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1282:2..466+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCCCTGACCGGCGGCGGCTCCTCCGGGTTGACATTCGAAGCATTCTC
AGCCGAAAACGACGGCGGGGAAGGAGGGGGCGGCGGAGGGTTCGCCGATG
CCGCAGCGGCCGCCTTGACCGCTGAAACCGGTGGGGAGGAGATCACCCCC
CCGGCGGTGTCAGCGATACAGTCGGCAGCGGTGGAGGAGTTGGCGGGGGC
GCAAGACCAAGCGATCGCCGCATCTAAGGCTGCGGAGGACGCGGCTGTAG
CTACGGCGGGGGATGCCGCCGATGATGCGGCTGCAGCGGTGGAGGCGGGG
GCAGCAGCGTTGGCCGAAGGCGCGGCGCCCGTGAAGAGGGGCCTGATGAA
AGGGGCTGCTTTTGGGATGGAGCCGGCCAAGAAGACCGGGGAGGATGCGG
GTGCGGAGAAGGAAGGGCTCTCTGACGGAGTTGTGGAGGGCACGGCCGGC
GAGGATGACGCTTGATCCGCCCTGACCGGCGGCGGCTCCTCCGGGTTGAC
ATTCGAAGCATTCTCAGCCGAAAACGACGGCGGGGAAGGAGGGGGCGGCG
GAGGGTTCGCCGATGCCGCAGCGGCCGCCTTGACCGCTGAAACCGGTGGG
GAGGAGATCACCCCCCCGGCGGTGTCAGCGATACAGTCGGCAGCGGTGGA
GGAGTTGGCGGGGGCGCAAGACCAAGCGATCGCCGCATCTAAGGCTGCGG
AGGACGCGGCTGTAGCTACGGCGGGGGATGCCGCCGATGATGCGGCTGCA
GCGGTGGAGGCGGGGGCAGCAGCGTTGGCCGAAGGCGCGGCGCCCGTGAA
GAGGGGCCTGATGAAAGGGGCTGCTTTTGGGATGGAGCCGGCCAAGAAGA
CCGGGGAGGATGCGGGTGCGGAGAAGGAAGGGCTCTCTGACGGAGTTGTG
GAGGGCACGGCCGGCGAGGATGACGCTTGA
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