mRNA_E-fasciculatus_F_contig12817.2129.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12817.2129.1
Unique NamemRNA_E-fasciculatus_F_contig12817.2129.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 2.400e-77
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAEASVV 389
            YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERY+GNFLLEVPTPSPGRVEVLYNMGNT ITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTL+SCLLLERSILLKSSQLSLLT CAEAS+V
Sbjct:  315 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTIITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLVSCLLLERSILLKSSQLSLLTPCAEASIV 443          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 2.410e-75
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAE 377
            YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERY+GNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIV LL+CLLLERSI+LKSSQLSLLT CAE
Sbjct:  120 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLERSIVLKSSQLSLLTPCAE 244          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.570e-47
Identity = 84/133 (63.16%), Postives = 101/133 (75.94%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAEASVVTLLF 401
            + PKCLCLLS+WP+F  +REWL NL+ ISLSP  IPLERYI NF+LEVP   PGR EV Y MG   +TFACPPPNKP+AW ++PFE LFQCL  EN+  +   +LLER ILL+SSQL LLT+ AE  + TLL+
Sbjct:  169 FTPKCLCLLSSWPFFTSYREWLTNLFLISLSPSDIPLERYICNFMLEVPNAVPGRTEVRYRMGANDLTFACPPPNKPIAWRALPFETLFQCLDDENVAAVFEAVLLERCILLRSSQLFLLTAAAEV-LTTLLY 300          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A4D9DDS2_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDS2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.850e-36
Identity = 69/126 (54.76%), Postives = 94/126 (74.60%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAW-GSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAE 377
            +APKCLCLLS +P+    R WLL LYR+S SP +IPLERYI NFLLEVPTP PGRV+V Y+M +  + + CP P++P  W G +  E +F+CLS +N++ + + +LLE+ +LL S+QLSLLT+ AE
Sbjct:  189 FAPKCLCLLSKYPFVEASRTWLLQLYRLSCSPTRIPLERYICNFLLEVPTPVPGRVDVQYSMLDLVLYYPCPSPHQPALWSGGLSLEAVFECLSPKNLLRVFNAVLLEQQVLLHSTQLSLLTAVAE 314          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A7S1ZPM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPM9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.490e-35
Identity = 64/126 (50.79%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRIS-LSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAE 377
            Y PKCL +LST+PY   FRE+L  L+R++ +    +P+ERYI NF  E+P P PG  EV   + ++ I F  PP N+P+AW S+PF  LF+CL  EN++T+   L LER +LL SSQLSLLT+C+E
Sbjct:   45 YLPKCLTILSTYPYLVAFREYLSQLHRLTKMGDMPMPIERYIVNFCAEIPAPPPGSFEVQTTVLDSVIKFWSPPYNQPIAWVSLPFSHLFECLEIENVITVWHALALERQVLLTSSQLSLLTTCSE 170          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A7S1TYQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYQ9_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.570e-34
Identity = 68/132 (51.52%), Postives = 93/132 (70.45%), Query Frame = 3
Query:    6 APKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAEASVVTLLF 401
            APKCL +LS WP+   +REWL  LYR+SLSP  +PLE YIG+F  EVP P PGR  V   + + TI+F  PP N P++W ++P+ PLF+CL   +I+ L +CLLLE+ ++L SSQ  LL++ +EA V +LLF
Sbjct:  219 APKCLVVLSYWPHHLSYREWLKQLYRVSLSPTPVPLEAYIGSFCHEVPLPPPGRTLVQVAIADQTISFHTPPENAPMSWSALPYAPLFECLRPADIICLFTCLLLEKHVVLISSQQFLLSTASEA-VTSLLF 349          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.570e-33
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAE 377
            Y PKCLC+LS WP+   +R +L  LYR+S+SP  +PLER I NF+ EVP P PG+V +L+N+G+  + F  PP N P++W  + F+ +F+ L   NI+ + S LL ER IL++SSQ SLLT+  E
Sbjct:  127 YVPKCLCILSHWPFRSQYRTFLTQLYRLSISPVTVPLERIISNFVCEVPVPPPGKVRILHNIGDAELVFTRPPVNNPISWTDLGFQQVFEALDLHNILRVFSALLTERQILVRSSQRSLLTTFGE 251          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A7S4HJA5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJA5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.750e-30
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRIS-LSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAE 377
            Y PKC+ L+S +PY   FRE+L+ L+R+S +    +PLERYI NF  E+P P PG  EV   + ++ I    PP N+P+ W S+PF  LF+CL  +NI+T+  C+ LER +LL S+QLSLLT C E
Sbjct:  180 YLPKCIVLISAYPYLAAFREFLVQLHRMSKMGEMPLPLERYIVNFCAEIPAPPPGSFEVQTTILDSVIKIWSPPHNQPIGWVSLPFSHLFECLDIQNILTVWHCMALERQVLLTSTQLSLLTECCE 305          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A1Z5J788_FISSO (UDENN domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J788_FISSO)

HSP 1 Score: 123 bits (308), Expect = 6.020e-30
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRISLS-PFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAE 377
            Y PKC+ LLST+PY   FRE+L  L R+S +    +P+ERYI NF  EVP P PG  EV   MG++ I    PP N P+AW S+PF  LF+CL  EN++ +  CL+LER +L+ S+Q SLLT  +E
Sbjct:  156 YIPKCVVLLSTYPYLAAFREYLTQLERLSKAGEMTVPIERYITNFCSEVPAPPPGSFEVQTTMGDSVIKIWSPPNNVPIAWVSLPFSYLFECLDVENVILVWHCLVLERQVLITSTQHSLLTIASE 281          
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Match: A0A482T435_9ARCH (UDENN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T435_9ARCH)

HSP 1 Score: 122 bits (305), Expect = 8.690e-30
Identity = 64/135 (47.41%), Postives = 90/135 (66.67%), Query Frame = 3
Query:    3 YAPKCLCLLSTWPYFGPFREWLLNLYRI--SLSPFQIPLERYIGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLLSCLLLERSILLKSSQLSLLTSCAEASVVTLLF 401
            Y  K +C+LS WP+  PF+++L+ LY +  S    +IP+ERYI NF+ ++P P  G+V+++Y + +  I F CPP N P  W   P  PLF CLS  NI+ L SC+L ER +LL SSQ SLLT CAE S+++LL+
Sbjct:  174 YVLKGICILSYWPFIEPFKKFLMILYNMLGSDKANKIPIERYICNFIDDIPAPPAGKVDIVYYLNDDIIRFRCPPLNVPSTWLGFPLLPLFHCLSLHNILLLFSCVLTERQVLLISSQYSLLTICAE-SIMSLLY 307          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12817.2129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA5_9PHAE2.400e-7796.12UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FMH7_ECTSI2.410e-7596.00UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA2.570e-4763.16UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A4D9DDS2_9STRA3.850e-3654.76UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S1ZPM9_9STRA6.490e-3550.79Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1TYQ9_9STRA7.570e-3451.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RHS4_9STRA2.570e-3348.80Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4HJA5_9STRA1.750e-3048.41Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5J788_FISSO6.020e-3050.00UDENN domain-containing protein n=2 Tax=Fistulifer... [more]
A0A482T435_9ARCH8.690e-3047.41UDENN domain-containing protein n=1 Tax=archaeon T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12817contigE-fasciculatus_F_contig12817:1014..1974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size406
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12817.2129.1prot_E-fasciculatus_F_contig12817.2129.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12817 1014..1974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.714762-CDS-E-fasciculatus_F_contig12817:1013..10931622927786.714762-CDS-E-fasciculatus_F_contig12817:1013..1093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12817 1014..1093 -
1695995693.7977934-CDS-E-fasciculatus_F_contig12817:1013..10931695995693.7977934-CDS-E-fasciculatus_F_contig12817:1013..1093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12817 1014..1093 -
1622927787.0749831-CDS-E-fasciculatus_F_contig12817:1329..14811622927787.0749831-CDS-E-fasciculatus_F_contig12817:1329..1481Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12817 1330..1481 -
1695995693.8064177-CDS-E-fasciculatus_F_contig12817:1329..14811695995693.8064177-CDS-E-fasciculatus_F_contig12817:1329..1481Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12817 1330..1481 -
1622927787.0868943-CDS-E-fasciculatus_F_contig12817:1801..19741622927787.0868943-CDS-E-fasciculatus_F_contig12817:1801..1974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12817 1802..1974 -
1695995693.8149078-CDS-E-fasciculatus_F_contig12817:1801..19741695995693.8149078-CDS-E-fasciculatus_F_contig12817:1801..1974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12817 1802..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12817.2129.1

>prot_E-fasciculatus_F_contig12817.2129.1 ID=prot_E-fasciculatus_F_contig12817.2129.1|Name=mRNA_E-fasciculatus_F_contig12817.2129.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp
FTPRSASACCRHGRTLGLSGSGSSTSIGYLSLPSRYLWRGTSETFCWKCR
RLLPAESRCCTTWATRQSRSRAPRRTSRWRGARSPSSLCSSASVTRTSSP
SYPASCWRGPSCSKAHSSAYSRPVLRRVLSHCFL*
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mRNA from alignment at E-fasciculatus_F_contig12817:1014..1974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12817.2129.1 ID=mRNA_E-fasciculatus_F_contig12817.2129.1|Name=mRNA_E-fasciculatus_F_contig12817.2129.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=961bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12817:1014..1974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTACGCCCCGAAGTGCCTCTGCCTGCTGTCGACATGGCCGTACTTTGGG CCTTTCCGGGAGTGGCTCCTCAACCTCTATCGGATATCTCTCTCTCCCTT CCAGATACCTTTGGAGAGGTACATCGGAAACTTTCTGCTGGAAGTGCCGA CGCCTTCTCCCGGCAGAGTCGAGGTGAGTGACGTGGAGTGACCATCGTGT TGGTGTTGTCGTTGTGTGTTTGTGAGGTGTGTATGGCGTTGTCACTGTTG TTGTCGTCGTTGCTGCTATTGTTTGTACTGCTGTCGTTGTGGTGTAGAAT ATTCCATGCGCAAGTGTTATCGTCGACGGCTGGACTACGCCAGTCTACCT TTCTTAGCCTTTGGAGGATATGCACCACTCTTCTTGTTGTTTACATACCC CTTCTGCACACATGACGTGCGTCGGCACTGTTCGGTGACGTCTACGCTAT TTGAATGACGCCTCCCTCCGCGCGGTTCGTTCTCCCCTCGCAGGTGCTGT ACAACATGGGCAACACGACAATCACGTTCGCGTGCCCCCCGCCGAACAAG CCGGTGGCGTGGGGCTCGGTCCCCTTCGAGCCTTTGTTCCAGTGCCTCAG TCACGAGAACATCGTCACCCTCCTATCCTGCCTCCTGCTGGAGAGGTGCG TCGTCTCTTGCTTTTGTGGTTGTTGTTGTCGTTGTTGTTGCTGTTTTCGT ATTGCAAACCGTTCCCGTCCCTGCTCAGTACCTTCTACGATCTATCTGAC GTTTTCGTAGTCACAAGCCAACTACCCAGAAAGGGCACCCACTTAAACAA TACATAATGAACCTTGTTGTTGTTTTTAAGGCCATGTCGTTGCCCTTGCC GCTGCTGCTGCCGCTGTCCTCACGCCCGCAGGTCCATCTTGCTCAAAAGC TCACAGCTCAGCCTACTCACGTCCTGTGCTGAGGCGAGTGTTGTCACATT GCTTTTTATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12817:1014..1974-

>mRNA_E-fasciculatus_F_contig12817.2129.1 ID=mRNA_E-fasciculatus_F_contig12817.2129.1|Name=mRNA_E-fasciculatus_F_contig12817.2129.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12817:1014..1974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTACGCCCCGAAGTGCCTCTGCCTGCTGTCGACATGGCCGTACTTTGGG
CCTTTCCGGGAGTGGCTCCTCAACCTCTATCGGATATCTCTCTCTCCCTT
CCAGATACCTTTGGAGAGGTACATCGGAAACTTTCTGCTGGAAGTGCCGA
CGCCTTCTCCCGGCAGAGTCGAGTTTACGCCCCGAAGTGCCTCTGCCTGC
TGTCGACATGGCCGTACTTTGGGCCTTTCCGGGAGTGGCTCCTCAACCTC
TATCGGATATCTCTCTCTCCCTTCCAGATACCTTTGGAGAGGTACATCGG
AAACTTTCTGCTGGAAGTGCCGACGCCTTCTCCCGGCAGAGTCGAGGTGC
TGTACAACATGGGCAACACGACAATCACGTTCGCGTGCCCCCCGCCGAAC
AAGCCGGTGGCGTGGGGCTCGGTCCCCTTCGAGCCTTTGTTCCAGTGCCT
CAGTCACGAGAACATCGTCACCCTCCTATCCTGCCTCCTGCTGGAGAGGT
GCTGTACAACATGGGCAACACGACAATCACGTTCGCGTGCCCCCCGCCGA
ACAAGCCGGTGGCGTGGGGCTCGGTCCCCTTCGAGCCTTTGTTCCAGTGC
CTCAGTCACGAGAACATCGTCACCCTCCTATCCTGCCTCCTGCTGGAGAG
GTCCATCTTGCTCAAAAGCTCACAGCTCAGCCTACTCACGTCCTGTGCTG
AGGCGAGTGTTGTCACATTGCTTTTTATAGGTCCATCTTGCTCAAAAGCT
CACAGCTCAGCCTACTCACGTCCTGTGCTGAGGCGAGTGTTGTCACATTG
CTTTTTATAG
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