mRNA_E-fasciculatus_F_contig12811.2128.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12811.2128.1
Unique NamemRNA_E-fasciculatus_F_contig12811.2128.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: A0A6H5JSP3_9PHAE (DHO_dh domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.580e-44
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPRKASRK 228
            VPLIGVGGVGTGQ+AYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTS+AEAVGSDHRPPRK SRK
Sbjct:   62 VPLIGVGGVGTGQDAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSVAEAVGSDHRPPRKTSRK 137
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: D8LB11_ECTSI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB11_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 4.080e-42
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPRKASRK 228
            VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTS+AEAVGSDHRPPRKASRK
Sbjct:  389 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSVAEAVGSDHRPPRKASRK 464
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: PYRD_RHORT (Dihydroorotate dehydrogenase (quinone) n=2 Tax=Rhodospirillum rubrum TaxID=1085 RepID=PYRD_RHORT)

HSP 1 Score: 104 bits (260), Expect = 4.120e-25
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPRKASRK 228
            +PLIGVGG+G G EAY +IRAGASL+Q+YS LVY+GPG V  IK +LA  L+ DGF S+AEAVG+DHR P+ AS K
Sbjct:  285 LPLIGVGGIGDGAEAYARIRAGASLIQIYSALVYEGPGLVGRIKRDLAQRLRADGFASVAEAVGADHRDPKGASGK 360
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: A0A7S3QLY8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QLY8_DUNTE)

HSP 1 Score: 98.6 bits (244), Expect = 1.090e-24
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPRK 216
            +PLIG GGV  G++AY KIRAGASLVQ+Y+ L Y GPG VP IKAELA LL+ DGF S+A AVG DH+P ++
Sbjct:   53 IPLIGCGGVSNGEDAYRKIRAGASLVQLYTALAYAGPGVVPTIKAELARLLERDGFESVAAAVGVDHQPGKR 124
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: A0A7S3QLZ6_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QLZ6_DUNTE)

HSP 1 Score: 98.6 bits (244), Expect = 4.100e-24
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPRK 216
            +PLIG GGV  G++AY KIRAGASLVQ+Y+ L Y GPG VP IKAELA LL+ DGF S+A AVG DH+P ++
Sbjct:  105 IPLIGCGGVSNGEDAYRKIRAGASLVQLYTALAYAGPGVVPTIKAELARLLERDGFESVAAAVGVDHQPGKR 176
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: G1XZR5_9PROT (Dihydroorotate dehydrogenase (quinone) n=7 Tax=Nitrospirillum amazonense TaxID=28077 RepID=G1XZR5_9PROT)

HSP 1 Score: 101 bits (252), Expect = 5.080e-24
Identity = 45/68 (66.18%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHR 204
            +PL+GVGG+G+G +AY KIRAGASLVQ+YS L+Y GPG V  IK +LADLL+ DGFT++A+AVG+DH+
Sbjct:  288 LPLVGVGGIGSGAQAYAKIRAGASLVQIYSALIYHGPGLVAAIKRDLADLLRRDGFTNVAQAVGADHK 355
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: A0A239FKB1_9PROT (Dihydroorotate dehydrogenase (quinone) n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239FKB1_9PROT)

HSP 1 Score: 100 bits (250), Expect = 1.070e-23
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPRKASRK 228
            +PL+GVGG+ +G +AY KIRAGASLVQ YS +VY+GPG V  +KAELA LL  DG+ ++AEAVG+DHR PR+ +++
Sbjct:  286 LPLVGVGGIASGADAYAKIRAGASLVQFYSAMVYEGPGLVGRVKAELARLLAADGYLTVAEAVGADHRAPRRTAQE 361
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: H6SJK9_PARPM (Dihydroorotate dehydrogenase (quinone) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SJK9_PARPM)

HSP 1 Score: 100 bits (249), Expect = 1.520e-23
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHR 204
            VPLIGVGG+ TG +AY ++RAGASLVQVYS L+Y+GPG V  IK +L D LK DGFTS+AEAVG+DHR
Sbjct:  296 VPLIGVGGITTGADAYARLRAGASLVQVYSALIYEGPGLVRRIKEDLIDCLKKDGFTSVAEAVGADHR 363
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: A0A836CC01_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC01_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.580e-23
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHR 204
            VPLIGVGGVGTGQ+AYDKIRAGASLVQ+YS++VY G G V  +K ELA LL+ +G+ S+AEAVG+ HR
Sbjct:  365 VPLIGVGGVGTGQDAYDKIRAGASLVQIYSMMVYNGAGCVQRVKKELAALLRKNGYASVAEAVGAAHR 432
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BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Match: A0A059LQ13_9CHLO (DHO_dh domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQ13_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 1.670e-23
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSIAEAVGSDHRPPR 213
            +P++GVGGV +G++AY KIRAGASLVQ+Y+  VY GP  VP IK ELA  L+ DGF S+A+AVG+DHR  R
Sbjct:   19 LPIVGVGGVSSGEDAYRKIRAGASLVQLYTAFVYGGPALVPRIKCELAACLERDGFASVAQAVGADHRERR 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12811.2128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSP3_9PHAE1.580e-4496.05DHO_dh domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LB11_ECTSI4.080e-4298.68Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
PYRD_RHORT4.120e-2565.79Dihydroorotate dehydrogenase (quinone) n=2 Tax=Rho... [more]
A0A7S3QLY8_DUNTE1.090e-2465.28Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S3QLZ6_DUNTE4.100e-2465.28Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
G1XZR5_9PROT5.080e-2466.18Dihydroorotate dehydrogenase (quinone) n=7 Tax=Nit... [more]
A0A239FKB1_9PROT1.070e-2360.53Dihydroorotate dehydrogenase (quinone) n=2 Tax=Azo... [more]
H6SJK9_PARPM1.520e-2370.59Dihydroorotate dehydrogenase (quinone) n=1 Tax=Par... [more]
A0A836CC01_9STRA1.580e-2370.59Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A059LQ13_9CHLO1.670e-2361.97DHO_dh domain-containing protein n=1 Tax=Helicospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12811contigE-fasciculatus_F_contig12811:3209..3864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D8LB11
Preferred nameDHODH
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009163,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046390,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
EggNOG free text desc.dihydroorotate dehydrogenase activity
EggNOG OGsCOG0167@1,KOG1436@2759
Ec32 ortholog descriptionDihydroorotate dehydrogenase, class 2
Ec32 orthologEc-27_005670.1
EC1.3.5.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.6513548-CDS-E-fasciculatus_F_contig12811:3208..32891622927786.6513548-CDS-E-fasciculatus_F_contig12811:3208..3289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 3209..3289 +
1695995693.7719498-CDS-E-fasciculatus_F_contig12811:3208..32891695995693.7719498-CDS-E-fasciculatus_F_contig12811:3208..3289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 3209..3289 +
1622927786.6675413-CDS-E-fasciculatus_F_contig12811:3714..38641622927786.6675413-CDS-E-fasciculatus_F_contig12811:3714..3864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 3715..3864 +
1695995693.7865508-CDS-E-fasciculatus_F_contig12811:3714..38641695995693.7865508-CDS-E-fasciculatus_F_contig12811:3714..3864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 3715..3864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12811.2128.1prot_E-fasciculatus_F_contig12811.2128.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12811 3209..3864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12811.2128.1

>prot_E-fasciculatus_F_contig12811.2128.1 ID=prot_E-fasciculatus_F_contig12811.2128.1|Name=mRNA_E-fasciculatus_F_contig12811.2128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADL
LKTDGFTSIAEAVGSDHRPPRKASRK*
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mRNA from alignment at E-fasciculatus_F_contig12811:3209..3864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12811.2128.1 ID=mRNA_E-fasciculatus_F_contig12811.2128.1|Name=mRNA_E-fasciculatus_F_contig12811.2128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=656bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12811:3209..3864+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCCTCTGATCGGCGTTGGTGGAGTGGGGACGGGCCAGGAGGCCTATGA
CAAGATCCGCGCCGGGGCTTCTCTTGTCCAGGTGCTGTTGATGGCGAAAT
GCTTACCTTGTCGGCGGTAATCACATGGCTCCCATGCCTAGTCTGCTCGT
GTGGAAGCTATCAATAGAAGTGTTGCACGTGGTGCAATAAATGGCGGTGC
TTGATGCTCCGAAACTTTCGTCTAGGTATTGATGTTCTGAAGTTTTCGCG
TGCATGCAACGACGACAACATGATGTTGTGGCCATGGACATCGTCGCCCT
ACTTCAAAAATCGAATGCAACTTCTGAGGCTTTTTTTTTTTTTTGGCATC
AAATGTCTGGTAAAACCGGCCGACCAAAGGCAGTATACGGCCTCGTATGC
ATCGACCAGTGACAATTTACTCGCACACAAACAGCACAGCAACGCACGCT
TATTCATCATCTTCTTCTCGTGACAAAACCCGCCTCTCTCGTCGCGCGGC
GACCAGGTGTACTCCCTCCTGGTCTACAAGGGACCCGGCGCCGTTCCGGG
CATCAAGGCGGAGCTGGCCGACCTCCTCAAGACGGACGGGTTTACATCTA
TTGCGGAGGCGGTTGGTTCCGACCACCGACCCCCTAGAAAAGCGTCCCGG
AAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12811:3209..3864+

>mRNA_E-fasciculatus_F_contig12811.2128.1 ID=mRNA_E-fasciculatus_F_contig12811.2128.1|Name=mRNA_E-fasciculatus_F_contig12811.2128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12811:3209..3864+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCCTCTGATCGGCGTTGGTGGAGTGGGGACGGGCCAGGAGGCCTATGA
CAAGATCCGCGCCGGGGCTTCTCTTGTCCAGGTCCCTCTGATCGGCGTTG
GTGGAGTGGGGACGGGCCAGGAGGCCTATGACAAGATCCGCGCCGGGGCT
TCTCTTGTCCAGGTGTACTCCCTCCTGGTCTACAAGGGACCCGGCGCCGT
TCCGGGCATCAAGGCGGAGCTGGCCGACCTCCTCAAGACGGACGGGTTTA
CATCTATTGCGGAGGCGGTTGGTTCCGACCACCGACCCCCTAGAAAAGCG
TCCCGGAAGTGAGTGTACTCCCTCCTGGTCTACAAGGGACCCGGCGCCGT
TCCGGGCATCAAGGCGGAGCTGGCCGACCTCCTCAAGACGGACGGGTTTA
CATCTATTGCGGAGGCGGTTGGTTCCGACCACCGACCCCCTAGAAAAGCG
TCCCGGAAGTGA
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