mRNA_E-fasciculatus_F_contig12811.2127.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12811.2127.1
Unique NamemRNA_E-fasciculatus_F_contig12811.2127.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: D8LB11_ECTSI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB11_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 4.230e-122
Identity = 190/200 (95.00%), Postives = 193/200 (96.50%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK 600
            RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQV CESTGNP PLPLLVKIAPDLTEREKRDIANVVLSTK     VDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTK++TE+IRDMYRLTKGK
Sbjct:  195 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQV-CESTGNPMPLPLLVKIAPDLTEREKRDIANVVLSTK-----VDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKMSTETIRDMYRLTKGK 388
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: Q75XR0_EUGGR (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Euglena gracilis TaxID=3039 RepID=Q75XR0_EUGGR)

HSP 1 Score: 224 bits (570), Expect = 2.580e-68
Identity = 122/206 (59.22%), Postives = 153/206 (74.27%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTG-------NPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKG 597
            RLE+D  +INR GFNS GL  V++RL+ RQ      R GL+GVNVGKNKL ED++AD+ KG+R LG YADYLV+NVSSPNTPGLR+LQ   A+  +I A+M ARD+VV ++ G       +  PLPLL+KIAPDLT  EK+DIA VV+ TK     +DGLIVSNTTVSRP+ L S  KG+ GGLSG PL +++T++IRDMY LT+G
Sbjct:  155 RLEQDRAIINRYGFNSQGLAAVRKRLEARQHRPAP-RGGLVGVNVGKNKLQEDAAADYSKGLRELGPYADYLVINVSSPNTPGLRNLQKRSAMADLIKASMVARDEVVRDADGRRAAAGKSAAPLPLLIKIAPDLTAEEKQDIAEVVMETK-----IDGLIVSNTTVSRPASLLSPHKGQTGGLSGAPLREMSTQAIRDMYALTRG 354
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: A0A3M6VCA1_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCA1_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.280e-66
Identity = 118/207 (57.00%), Postives = 151/207 (72.95%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLK-------KRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK 600
            RL ED GVINR GFNS GL  V  RLK       KRQA     R+G+LGVN+GKNKL+ED++AD+ KG+ TLG YADYLVVNVSSPNTPGLR LQG   ++ +++  +DARD+V      N   +PLL+KIAPDLTE +K+DIA+V     A++L +DGL+VSNTT+SRP +L+  +K E GGLSG P+  L+T+ + DMYRLTKG+
Sbjct:  158 RLHEDMGVINRYGFNSKGLDYVAARLKRYVGSRAKRQAPGNGHRSGVLGVNLGKNKLTEDAAADYVKGVHTLGKYADYLVVNVSSPNTPGLRTLQGRNQLKNLLVRVIDARDEVATTEKRN---IPLLLKIAPDLTEDDKQDIADV-----ALELNLDGLVVSNTTLSRPDFLKDAAKAETGGLSGLPVRDLSTKVLSDMYRLTKGR 356
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: A0A6H5JN43_9PHAE (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN43_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 3.600e-66
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVV 324
            RLEEDEGVINRCGFNSDGLRVVQQRLK RQASAMNGR+GLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVV
Sbjct:  126 RLEEDEGVINRCGFNSDGLRVVQQRLKNRQASAMNGRSGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVV 233
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: A0A851QWY0_TYCCO (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=14 Tax=Passeriformes TaxID=9126 RepID=A0A851QWY0_TYCCO)

HSP 1 Score: 208 bits (530), Expect = 7.300e-63
Identity = 120/202 (59.41%), Postives = 149/202 (73.76%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMN-GRAGL-LGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK 600
            RL EDE VINR GFNS G   V++RL+ RQ + M    AG+ LGVN+GKNK S D++AD+  G+RTLG  ADYLVVNVSSPNTPGLRDLQG   +R ++   +  RD + CE     KP  +LVKIAPDLT ++K+DIA+VV      +L VDGLIVSNTTVSRPS LRS  +GE GGLSGKPL +L+T++IR+MY LT+G+
Sbjct:  127 RLAEDEAVINRYGFNSHGHVAVERRLRARQETQMRLTAAGMPLGVNLGKNKSSTDAAADYVAGVRTLGPLADYLVVNVSSPNTPGLRDLQGKAELRDLLSKVLAERDLLPCER----KPA-VLVKIAPDLTAQDKQDIASVVC-----ELGVDGLIVSNTTVSRPSSLRSRQRGEPGGLSGKPLRELSTQTIREMYTLTQGR 318
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: A0A484E0J1_BRELC (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0J1_BRELC)

HSP 1 Score: 208 bits (530), Expect = 9.000e-63
Identity = 115/207 (55.56%), Postives = 148/207 (71.50%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLK-------KRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK 600
            RL ED GVINR GFNS GL  V  RLK       KRQ +    R G+LGVN+GKNKL+ D++AD+ +G+  LG +ADYLVVNVSSPNTPGLR LQG   +R ++L  ++ARD V   +T   + +PLLVKIAPDLTE +K+DIA V     A++L +DGLIVSNTT+SRP+ L+   K EAGGLSG P+  ++T+ + D+Y+LTKGK
Sbjct:  125 RLPEDRGVINRYGFNSKGLEYVSSRLKQYIQSREKRQNAGH--RTGVLGVNLGKNKLTADAAADYVQGVHALGKFADYLVVNVSSPNTPGLRTLQGKNQLRDLLLRVLEARDTV---ATTEARRIPLLVKIAPDLTENDKQDIAQV-----ALELKLDGLIVSNTTLSRPNTLKGVEKAEAGGLSGLPVRDISTKVLSDLYKLTKGK 321
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: UPI001864789D (dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864789D)

HSP 1 Score: 209 bits (532), Expect = 1.070e-62
Identity = 114/202 (56.44%), Postives = 148/202 (73.27%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMN-GRAGL-LGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK 600
            RL  D+ VINR GFNS GL  VQ+RLKKR+A+ +    AG  +G+N+GKNKL++D+ ADF +G+RTLG  ADYLVVNVSSPNTPGLRDLQG + +R ++   +  RD + CE        P+LVKIAPDLT ++K+DIA+V+      +L VDG+IVSNTTVSRP  L+   +GE GGLSG+PL  +AT ++R+MY LTKGK
Sbjct:  134 RLTADQAVINRYGFNSCGLAEVQERLKKREATQLQLTHAGQPMGINLGKNKLTQDAVADFTEGVRTLGPLADYLVVNVSSPNTPGLRDLQGKEELRRLLDRVLKERDALKCEQRP-----PVLVKIAPDLTAQDKQDIADVI-----SELGVDGVIVSNTTVSRPDELKDSQQGEVGGLSGRPLRDMATHTVREMYCLTKGK 325
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BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: A0A7S1JAW3_9EUGL (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JAW3_9EUGL)

HSP 1 Score: 209 bits (533), Expect = 1.100e-62
Identity = 116/206 (56.31%), Postives = 144/206 (69.90%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGN-------PKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKG 597
            RL ED GVINR GFNS+GL  V++RL  RQA+    R GL+G+N+GKNK  ED++AD+ +GI  LG Y DYLVVNVSSPNTPGLR LQ   A+  +I +A  ARDQV+ +  G         +PLPLL+KIAPD+T  E++DIA VVL TK     +DG++VSNTT+ RP  L+S  K E GGLSG P+  L+T  IRDMY LTKG
Sbjct:  167 RLVEDRGVINRYGFNSEGLAAVRERLHARQAARPPNR-GLVGINLGKNKEQEDAAADYAQGIAELGPYGDYLVVNVSSPNTPGLRMLQKRSAMADLITSAQRARDQVLQDEDGRRAAAGKGARPLPLLIKIAPDITPDERKDIAEVVLKTK-----IDGMVVSNTTIGRPPSLQSPHKAEGGGLSGAPVKALSTAVIRDMYALTKG 366
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: A0A7L0PR58_9AVES (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L0PR58_9AVES)

HSP 1 Score: 206 bits (524), Expect = 1.130e-62
Identity = 115/202 (56.93%), Postives = 146/202 (72.28%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMN--GRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK 600
            RL EDE VINR GFNS G   V++RL+ RQ + +   G    LGVN+GKNK S D++AD+  G+RTLG  ADYLVVNVSSPNTPGLRDLQG   +R ++   +  RD + CE     KP  +LVKIAPDLT ++K+D+A+V+      +L VDGLIVSNTTVSRPS LRS  + E GGLSGKPL +L+T++IR+MY LT+G+
Sbjct:   67 RLAEDEAVINRYGFNSHGHAAVERRLRARQETQLRLTGAGMPLGVNLGKNKSSTDAAADYVAGVRTLGPLADYLVVNVSSPNTPGLRDLQGKAELRDLLTKVLAERDMLPCER----KPA-VLVKIAPDLTAQDKQDVASVIC-----ELGVDGLIVSNTTVSRPSSLRSRQRTEPGGLSGKPLRELSTQTIREMYSLTRGR 258
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Match: H3GAQ0_PHYRM (Dihydroorotate dehydrogenase (quinone), mitochondrial n=17 Tax=Phytophthora TaxID=4783 RepID=H3GAQ0_PHYRM)

HSP 1 Score: 207 bits (526), Expect = 1.370e-62
Identity = 113/206 (54.85%), Postives = 148/206 (71.84%), Query Frame = 1 
Query:    1 RLEEDEGVINRCGFNSDGLRVVQQRLKK-------RQASAMNGRAGLLGVNVGKNKLSEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAAMDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKG 597
            RL ED GVINR GFNS GL     RL +       R A     RAG+LGVN+GKNKL+ED++AD+ +G+  LG YADYLVVNVSSPNTPGLR LQG   ++ +++  + ARD+V   +T   + +PLLVKIAPDLT+ +K+DIA+V     A++L +DGL+VSNTT+SRP  L+ E+KGE GGLSG P+  L+T+ + DMY+LTKG
Sbjct:   93 RLYEDRGVINRYGFNSKGLEHAGARLHEYVAERAVRTAPGNGHRAGVLGVNLGKNKLTEDAAADYVQGVHALGQYADYLVVNVSSPNTPGLRTLQGKLQLQQLLVRVIKARDEV---ATQEKRDIPLLVKIAPDLTQDDKQDIADV-----ALELKLDGLVVSNTTLSRPDTLQGEAKGETGGLSGLPVRDLSTKVLGDMYKLTKG 290
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12811.2127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB11_ECTSI4.230e-12295.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
Q75XR0_EUGGR2.580e-6859.22Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A3M6VCA1_9STRA1.280e-6657.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A6H5JN43_9PHAE3.600e-6698.15Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A851QWY0_TYCCO7.300e-6359.41Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A484E0J1_BRELC9.000e-6355.56Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
UPI001864789D1.070e-6256.44dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A7S1JAW3_9EUGL1.100e-6256.31Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A7L0PR58_9AVES1.130e-6256.93Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
H3GAQ0_PHYRM1.370e-6254.85Dihydroorotate dehydrogenase (quinone), mitochondr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12811contigE-fasciculatus_F_contig12811:278..2617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue5.9e-98
Seed eggNOG ortholog2880.D8LB11
Preferred nameDHODH
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009163,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046390,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
EggNOG free text desc.dihydroorotate dehydrogenase activity
EggNOG OGsCOG0167@1,KOG1436@2759
EC1.3.5.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDihydroorotate dehydrogenase, class 2
Ec32 orthologEc-27_005670.1
Exons4
Model size604
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12811.2127.1prot_E-fasciculatus_F_contig12811.2127.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12811 278..2616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.5377028-CDS-E-fasciculatus_F_contig12811:277..4331622927786.5377028-CDS-E-fasciculatus_F_contig12811:277..433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 278..433 +
1695995693.730747-CDS-E-fasciculatus_F_contig12811:277..4331695995693.730747-CDS-E-fasciculatus_F_contig12811:277..433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 278..433 +
1622927786.5522294-CDS-E-fasciculatus_F_contig12811:739..9041622927786.5522294-CDS-E-fasciculatus_F_contig12811:739..904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 740..904 +
1695995693.7430608-CDS-E-fasciculatus_F_contig12811:739..9041695995693.7430608-CDS-E-fasciculatus_F_contig12811:739..904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 740..904 +
1622927786.5667105-CDS-E-fasciculatus_F_contig12811:1833..19591622927786.5667105-CDS-E-fasciculatus_F_contig12811:1833..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 1834..1959 +
1695995693.7525215-CDS-E-fasciculatus_F_contig12811:1833..19591695995693.7525215-CDS-E-fasciculatus_F_contig12811:1833..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 1834..1959 +
1622927786.5765-CDS-E-fasciculatus_F_contig12811:2460..26161622927786.5765-CDS-E-fasciculatus_F_contig12811:2460..2616Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 2461..2616 +
1695995693.7617276-CDS-E-fasciculatus_F_contig12811:2460..26161695995693.7617276-CDS-E-fasciculatus_F_contig12811:2460..2616Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12811 2461..2616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12811.2127.1

>prot_E-fasciculatus_F_contig12811.2127.1 ID=prot_E-fasciculatus_F_contig12811.2127.1|Name=mRNA_E-fasciculatus_F_contig12811.2127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=201bp
RLEEDEGVINRCGFNSDGLRVVQQRLKKRQASAMNGRAGLLGVNVGKNKL
SEDSSADFCKGIRTLGCYADYLVVNVSSPNTPGLRDLQGVKAIRAVILAA
MDARDQVVCESTGNPKPLPLLVKIAPDLTEREKRDIANVVLSTKAMQLAV
DGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKLATESIRDMYRLTKGK
A
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mRNA from alignment at E-fasciculatus_F_contig12811:278..2617+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12811.2127.1 ID=mRNA_E-fasciculatus_F_contig12811.2127.1|Name=mRNA_E-fasciculatus_F_contig12811.2127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2340bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12811:278..2617+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTGGAGGAAGACGAGGGCGTCATCAACCGCTGCGGCTTCAACAGCGA
CGGCCTGCGGGTGGTGCAGCAACGCCTCAAGAAGCGGCAGGCCTCCGCCA
TGAACGGCCGCGCCGGGTTGCTAGGCGTCAACGTCGGGAAGAACAAGCTA
TCCGAGGTAAATCCATCTCATGTGCTCTTTTTTTTCTTCTTTCAATGTAA
AAGTAACACAATAAACAAAGCTCGGTCCTCTTGACCGGGATTCGTGATAA
ATGGTCTCGCGTCTACAACAAGCAACCCCCCCCCTGTGAACGTAGCCTGG
GCCGGCAAAACCCTGGCCTACATAGCTCCGTCTCGGCATTATAGAGATGC
AAAAGTCTAATGTATTGTCTAACGACTTCGGCATGCGTTTTCATGAGGTC
CCCCCCCCCCCGCGTGCGCGCTGTCACAAACGCCGTCGCCACCGCCAACG
GTATTTTTTCAGGACTCCTCGGCGGACTTCTGCAAGGGCATCCGCACGCT
GGGGTGCTACGCGGACTACCTGGTGGTGAACGTGTCGTCTCCCAACACGC
CGGGGCTGCGGGACCTCCAGGGCGTCAAGGCCATCAGGGCGGTCATTCTG
GCTGCGATGGACGCAAGAGATCAGGTGGTGACTTGAATCTGCAGGTGCTG
TCTGGACTGCGGCGTGGTGTTTGGGCGTTTGGGCGTGGTACAGTACTGCT
GTTCCCCTCCCTTGTTTTCGGTGTGTCTTGCGCTGTGTGGGGTTGCGTGT
TGCCTGTGCTCCCCCGCGCATGTCTTATATTATATTGTTGCCGCGGTGAT
TCCTTCGTGTCTGGCACAGTTTGGTTGATGTTTTTGCAATTTGCTTATTT
CCCCCCCTCGACTCCGTTGCGCTACGTCTTGTTTTGGGCAGTCGTCCTCC
GCTGCCCTTTTTTTTTTTCTTCTTCACTTTACACCAGAGCTCATAACATT
TCTGCCGGTCTTACTCCAACCCGTGGCCGCACAGAAGAGCTCCTCTCCCT
CCCCTCCTCTCCTGCGGTATTTTGCCTAAGAGTTTTTTCAGAAGAGTCAG
GCTGTCTCTTCCCTGTGTACACACGAACTAGCGCTGTCCACATACAGGAT
CGCAAGCGAGAGAAAAGTTCATGTTGCAAGGAAAGCTCGCTCACGCCGGG
ACTCGAACCCTTGACCTGGAGCTAGGGGATTATGCGAATTCTTAACCAGA
CCACCGGGGCAATCGGCAACTTTATCTAGTACCTTCGATTCATTCGGTTT
TACTGTTCTCGTAAGATGCGGCCGGCACTCTGTTGTTTTATTCGCGACTT
CACATTATTTGCTTATTCGTAAGGAGGATTCGCCAGGTTCTTGGGAAGAT
GGATGCCAACAAGAATGACGACAAAACCTTGAATGCCATGTCTTCATCCC
GAAAGGCGTTTCATACCCATGCGGTTATTACTTCTATGAGTAGATACTCG
TTCCCCTTTATGCAAACACATCTTTTTTTTGTCACACTCCTTCATGCCCG
CTCCTCTCGGTGTTGTGTCTGCTCTTGCCATATGACAAATGTGTGCTCGA
GCGAAGGTCTGCGAGTCCACTGGCAATCCGAAGCCTCTGCCGCTACTGGT
CAAGATAGCCCCTGACCTGACTGAGAGGGAGAAGAGGGACATCGCCAATG
TCGTCCTTTCCACCAAGGCAATGCAACTTGCTGTAGATTTCATAGTTTTG
GTAGATTTCGTAGATTTCCCGGAAAAGGCGGAAGGGAAATGCAGCGGAAG
ATAGCCTGCGCATTTCGTCGTTTGACTTGGTCGTGTTTATGAAGGAGCGG
AAGTTCTGCACATCCTACGTCTCGCGTCGCAAAATGGTTGTATATGAACA
GGCTCATATTTTGCGATTACGCATCCCTTTGCGATTTTCTTGGGGATAGA
TGATGGTGCAACGTACCTCAAGTGAACGTGGGTGGCGAAAGGGGAGTCCG
CCGAGTGGGAAGTGGGTGCGTCCCAGGCGCAGAACGCGATCCAGAACGCG
ATTCGCCCAACTGACTCTGTTTTTCCTCCGACATACGCTTCGAGCACCCC
TGCCGTGCCCACCAATGATTGTTGATATCAATCTGGCATTCGGTCCCTCC
CTGTATTTTTTAGTCCTGTCCTGGCAGTCACCATTGTATGCCCTGGCCCC
TTCCCTTTCTTTTGGTTTGTTCCGTGTCTGCAGGTGGACGGGCTGATCGT
CTCGAACACTACGGTGTCTCGACCGTCCTACCTCCGGAGCGAGAGCAAGG
GGGAAGCCGGGGGCCTCAGCGGCAAGCCCCTGACGAAGCTGGCCACCGAG
AGCATCAGGGATATGTACCGCCTCACCAAAGGGAAGGCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12811:278..2617+

>mRNA_E-fasciculatus_F_contig12811.2127.1 ID=mRNA_E-fasciculatus_F_contig12811.2127.1|Name=mRNA_E-fasciculatus_F_contig12811.2127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12811:278..2617+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTGGAGGAAGACGAGGGCGTCATCAACCGCTGCGGCTTCAACAGCGA
CGGCCTGCGGGTGGTGCAGCAACGCCTCAAGAAGCGGCAGGCCTCCGCCA
TGAACGGCCGCGCCGGGTTGCTAGGCGTCAACGTCGGGAAGAACAAGCTA
TCCGAGAGGCTGGAGGAAGACGAGGGCGTCATCAACCGCTGCGGCTTCAA
CAGCGACGGCCTGCGGGTGGTGCAGCAACGCCTCAAGAAGCGGCAGGCCT
CCGCCATGAACGGCCGCGCCGGGTTGCTAGGCGTCAACGTCGGGAAGAAC
AAGCTATCCGAGGACTCCTCGGCGGACTTCTGCAAGGGCATCCGCACGCT
GGGGTGCTACGCGGACTACCTGGTGGTGAACGTGTCGTCTCCCAACACGC
CGGGGCTGCGGGACCTCCAGGGCGTCAAGGCCATCAGGGCGGTCATTCTG
GCTGCGATGGACGCAAGAGATCAGGTGGACTCCTCGGCGGACTTCTGCAA
GGGCATCCGCACGCTGGGGTGCTACGCGGACTACCTGGTGGTGAACGTGT
CGTCTCCCAACACGCCGGGGCTGCGGGACCTCCAGGGCGTCAAGGCCATC
AGGGCGGTCATTCTGGCTGCGATGGACGCAAGAGATCAGGTGGTCTGCGA
GTCCACTGGCAATCCGAAGCCTCTGCCGCTACTGGTCAAGATAGCCCCTG
ACCTGACTGAGAGGGAGAAGAGGGACATCGCCAATGTCGTCCTTTCCACC
AAGGCAATGCAACTTGCTGTCTGCGAGTCCACTGGCAATCCGAAGCCTCT
GCCGCTACTGGTCAAGATAGCCCCTGACCTGACTGAGAGGGAGAAGAGGG
ACATCGCCAATGTCGTCCTTTCCACCAAGGCAATGCAACTTGCTGTGGAC
GGGCTGATCGTCTCGAACACTACGGTGTCTCGACCGTCCTACCTCCGGAG
CGAGAGCAAGGGGGAAGCCGGGGGCCTCAGCGGCAAGCCCCTGACGAAGC
TGGCCACCGAGAGCATCAGGGATATGTACCGCCTCACCAAAGGGAAGGCA
GTGGACGGGCTGATCGTCTCGAACACTACGGTGTCTCGACCGTCCTACCT
CCGGAGCGAGAGCAAGGGGGAAGCCGGGGGCCTCAGCGGCAAGCCCCTGA
CGAAGCTGGCCACCGAGAGCATCAGGGATATGTACCGCCTCACCAAAGGG
AAGGCA
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