mRNA_E-fasciculatus_F_contig12806.2123.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12806.2123.1
Unique NamemRNA_E-fasciculatus_F_contig12806.2123.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12806.2123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12806contigE-fasciculatus_F_contig12806:96..732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size637
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.1522887-CDS-E-fasciculatus_F_contig12806:95..4431622927786.1522887-CDS-E-fasciculatus_F_contig12806:95..443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12806 96..443 +
1695995693.4515054-CDS-E-fasciculatus_F_contig12806:95..4431695995693.4515054-CDS-E-fasciculatus_F_contig12806:95..443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12806 96..443 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.1620157-UTR-E-fasciculatus_F_contig12806:443..7321622927786.1620157-UTR-E-fasciculatus_F_contig12806:443..732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12806 444..732 +
1695995693.463061-UTR-E-fasciculatus_F_contig12806:443..7321695995693.463061-UTR-E-fasciculatus_F_contig12806:443..732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12806 444..732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12806.2123.1prot_E-fasciculatus_F_contig12806.2123.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12806 96..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12806.2123.1

>prot_E-fasciculatus_F_contig12806.2123.1 ID=prot_E-fasciculatus_F_contig12806.2123.1|Name=mRNA_E-fasciculatus_F_contig12806.2123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
LACSKHRLRQLCTVIQFTAQGSSAAVETPWYGYLVGCTVLGGEAQWCGAR
KPDSPFIQSLSYGATDMPAPAMHASPPFCSCKSTYQCALPNVTRGGGRSI
FGRMSVCWSWTKRHG*
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mRNA from alignment at E-fasciculatus_F_contig12806:96..732+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12806.2123.1 ID=mRNA_E-fasciculatus_F_contig12806.2123.1|Name=mRNA_E-fasciculatus_F_contig12806.2123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=637bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12806:96..732+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGCTTGCTCCAAACACCGTTTGCGACAATTGTGTACTGTAATTCAGTT
TACTGCGCAGGGGTCCAGCGCTGCGGTAGAGACTCCTTGGTATGGCTACC
TCGTGGGATGTACGGTTCTAGGGGGTGAGGCCCAATGGTGTGGAGCGAGA
AAGCCTGACTCTCCGTTCATCCAATCCTTGTCATATGGAGCTACTGATAT
GCCAGCACCAGCAATGCATGCCTCTCCCCCTTTTTGTTCCTGTAAAAGCA
CCTATCAATGCGCTCTGCCGAATGTCACCCGGGGGGGGGGTCGAAGCATC
TTTGGCCGTATGTCTGTTTGTTGGTCTTGGACCAAACGACACGGGTAAGA
ATGCCTTGATGTTTCCTCTTGGTTTGAGCTTGGCGTGTGTTGGCTGCGTT
TATCGGCGCTAACCGGCTGGCTGAGTCTTGGTTCGCCTGCGTGATGGTGA
AATCCTACTACTTCAGGTCTGGACAAGAACTCACGTCAGCTCATGTGTCT
AGGTTTTTTGTTAAAGACCTTGGCCACATCCAACAGACAACGAGGAGGCC
CGTCTGACTTTGACCAGTATCTGCTTTTGGATGCCGGCTTTGGATAATGT
TGTTGCGTTGAAGATAGTACCCCACTGACCCTTGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12806:96..732+

>mRNA_E-fasciculatus_F_contig12806.2123.1 ID=mRNA_E-fasciculatus_F_contig12806.2123.1|Name=mRNA_E-fasciculatus_F_contig12806.2123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12806:96..732+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGCTTGCTCCAAACACCGTTTGCGACAATTGTGTACTGTAATTCAGTT
TACTGCGCAGGGGTCCAGCGCTGCGGTAGAGACTCCTTGGTATGGCTACC
TCGTGGGATGTACGGTTCTAGGGGGTGAGGCCCAATGGTGTGGAGCGAGA
AAGCCTGACTCTCCGTTCATCCAATCCTTGTCATATGGAGCTACTGATAT
GCCAGCACCAGCAATGCATGCCTCTCCCCCTTTTTGTTCCTGTAAAAGCA
CCTATCAATGCGCTCTGCCGAATGTCACCCGGGGGGGGGGTCGAAGCATC
TTTGGCCGTATGTCTGTTTGTTGGTCTTGGACCAAACGACACGGGTAACT
GGCTTGCTCCAAACACCGTTTGCGACAATTGTGTACTGTAATTCAGTTTA
CTGCGCAGGGGTCCAGCGCTGCGGTAGAGACTCCTTGGTATGGCTACCTC
GTGGGATGTACGGTTCTAGGGGGTGAGGCCCAATGGTGTGGAGCGAGAAA
GCCTGACTCTCCGTTCATCCAATCCTTGTCATATGGAGCTACTGATATGC
CAGCACCAGCAATGCATGCCTCTCCCCCTTTTTGTTCCTGTAAAAGCACC
TATCAATGCGCTCTGCCGAATGTCACCCGGGGGGGGGGTCGAAGCATCTT
TGGCCGTATGTCTGTTTGTTGGTCTTGGACCAAACGACACGGGTAA
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