mRNA_E-fasciculatus_F_contig12791.2115.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12791.2115.1
Unique NamemRNA_E-fasciculatus_F_contig12791.2115.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A6H5KJS5_9PHAE (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJS5_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 8.260e-84
Identity = 209/268 (77.99%), Postives = 215/268 (80.22%), Query Frame = 1 
Query:  310 FPQLVMHCAKVTGSLLTEERIFKEYLVHFRRPQPPAAA---VPPGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSGGTVVGARGGVSASAGGG---APSADGVRGKGGSDQPGAEAGRPRAPAETAALLPNGGGAPAAG---AAFTSPGKKSAKTTPRSGRKSYTAGGADXXXXXXXXXXXXARVTEQNGPRGEGALQDVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENSK 1086
            FPQL+MHCAKVTGSLLTEERIF++YLVHFRRPQPPAAA    P GTT    XXXXXXXXXXXXXXXXXXXXXXXXXXXX                        AP AD   GKGGSDQPG E  R RAP +TAAL P+GGGA       A+FTSPGKKSAKTTPRSGRKSYTAGGADXXXXXXXXX   ARVTEQNGPRGEGALQDVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENSK
Sbjct: 1260 FPQLLMHCAKVTGSLLTEERIFRDYLVHFRRPQPPAAAXXAAPSGTTQPGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPPADDAGGKGGSDQPGTEGERARAPVDTAAL-PSGGGAAXXXXXXASFTSPGKKSAKTTPRSGRKSYTAGGADXXXXXXXXXAAAARVTEQNGPRGEGALQDVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENSK 1526
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A7S4J014_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J014_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.250e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  898 DVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENSK 1086
            D+++W  S  AK+  CRGW R +D W RR+D T  R R  ++ +   DPK+RTRLC+HW+ SK
Sbjct: 1483 DIIIWEGSNAAKTFNCRGWMRSEDEWTRRVDTTL-RKRDTNVARCASDPKFRTRLCNHWDVSK 1544
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A7R9ZMV6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZMV6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.350e-9
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:  871 GPRGEGALQDVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENS 1083
            GP     + D+++W  S  AK+  CRGW R  + W RR D T  R R   L +   DPK+RTRLC+HW+ S
Sbjct:   40 GPAALADVGDIIIWEGSTAAKTYNCRGWIRSDEEWSRRADQTP-RKRDPTLVRCADDPKFRTRLCNHWDVS 109
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A4D9CQF7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQF7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.020e-8
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  892 LQDVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENS 1083
            L  V+V+  S +A S   RGWWR  +HW +R +  K RPR  HL + L D +YRTRLC H+E S
Sbjct:  894 LSQVVVFAGSSLAASSNSRGWWRPAEHWAKRGEAGKPRPRPPHLTRMLTDARYRTRLCQHYELS 957
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A1Z5JJ54_FISSO (Non-specific serine/threonine protein kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ54_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 1.400e-8
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  898 DVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENS 1083
            DV++W+ S  A+S+ CRGW R  + W RR+D +  R R  +L +  +DPK+RTRLC+HW+ S
Sbjct: 1137 DVIIWHGSTAARSLHCRGWSRSDEEWIRRVDASL-RKRDTNLERCAEDPKFRTRLCNHWDVS 1197
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A6U5FW69_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FW69_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.100e-6
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  898 DVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTK-QRPRGAHLNKALQDPKYRTRLCSHWENS 1083
            ++++W  S  AKS  CRGW+R  D WQ R   T  +R R  ++ +   +PK+RTRLC+HW+ S
Sbjct: 1074 EMVIWTGSEGAKSFNCRGWFRSGDAWQHRTSETLLERRRDVNILRCATEPKFRTRLCNHWDLS 1136
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BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Match: A0A448Z9E2_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9E2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.350e-6
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  895 QDVLVWNESGMAKSMGCRGWWRHQDHWQRRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENS 1083
            +D++VW  S  AK+   RGW R QD W R ++   ++ R     + ++DPK+RTRLC+HW+ S
Sbjct: 1172 EDIIVWEGSIAAKTFNNRGWSRSQDEWSRHIEPFYKK-RDPASKRCMEDPKFRTRLCNHWDMS 1233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12791.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KJS5_9PHAE8.260e-8477.99Non-specific serine/threonine protein kinase n=2 T... [more]
A0A7S4J014_9STRA6.250e-1047.62Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7R9ZMV6_9STRA8.350e-943.66Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A4D9CQF7_9STRA1.020e-848.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5JJ54_FISSO1.400e-846.77Non-specific serine/threonine protein kinase n=2 T... [more]
A0A6U5FW69_9STRA3.100e-642.86Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A448Z9E2_9STRA7.350e-641.27Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12791contigE-fasciculatus_F_contig12791:259..1557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue1.9e-45
Seed eggNOG ortholog2880.D7G2H1
Preferred nameIRE1
KEGG koko:K08852
KEGG Pathwayko04140,ko04141,ko04210,ko04932,ko05010,map04140,map04141,map04210,map04932,map05010
EggNOG free text desc.ribonuclease activity
EggNOG OGsCOG0515@1,KOG1027@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size1087
Cds size1008
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12791.2115.1prot_E-fasciculatus_F_contig12791.2115.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12791 259..1479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.7687783-CDS-E-fasciculatus_F_contig12791:258..3971622927784.7687783-CDS-E-fasciculatus_F_contig12791:258..397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12791 259..397 -
1695995693.0181715-CDS-E-fasciculatus_F_contig12791:258..3971695995693.0181715-CDS-E-fasciculatus_F_contig12791:258..397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12791 259..397 -
1622927784.7813368-CDS-E-fasciculatus_F_contig12791:610..14791622927784.7813368-CDS-E-fasciculatus_F_contig12791:610..1479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12791 611..1479 -
1695995693.0291557-CDS-E-fasciculatus_F_contig12791:610..14791695995693.0291557-CDS-E-fasciculatus_F_contig12791:610..1479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12791 611..1479 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.8814795-UTR-E-fasciculatus_F_contig12791:1479..15571622927784.8814795-UTR-E-fasciculatus_F_contig12791:1479..1557Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12791 1480..1557 -
1695995693.0380788-UTR-E-fasciculatus_F_contig12791:1479..15571695995693.0380788-UTR-E-fasciculatus_F_contig12791:1479..1557Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12791 1480..1557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12791.2115.1

>prot_E-fasciculatus_F_contig12791.2115.1 ID=prot_E-fasciculatus_F_contig12791.2115.1|Name=mRNA_E-fasciculatus_F_contig12791.2115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=336bp
MPVLVCDKYPSCRPGSFACTAFLCVALSRFRYVEKRCPSGAKALSLNDFA
LRALSIPPPLDSLVGLSLSRFRYVEERFPQLVMHCAKVTGSLLTEERIFK
EYLVHFRRPQPPAAAVPPGTTPSGTPVAAAHTASANGSASKPSAAPGGAV
PAGGGSGGTVVGARGGVSASAGGGAPSADGVRGKGGSDQPGAEAGRPRAP
AETAALLPNGGGAPAAGAAFTSPGKKSAKTTPRSGRKSYTAGGADGAGGD
GGAGAAAARVTEQNGPRGEGALQDVLVWNESGMAKSMGCRGWWRHQDHWQ
RRLDVTKQRPRGAHLNKALQDPKYRTRLCSHWENSK
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mRNA from alignment at E-fasciculatus_F_contig12791:259..1557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12791.2115.1 ID=mRNA_E-fasciculatus_F_contig12791.2115.1|Name=mRNA_E-fasciculatus_F_contig12791.2115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1299bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12791:259..1557- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACATCATCGACGAATCAGGTCCTCAATCAGAATGTACCGTTTGTTGTCA
AGCATGATCCATCCGTTGCTTGTGCACCATGCCGGTTTTGGTTTGCGACA
AATATCCGTCCTGCCGGCCTGGTTCTTTTGCTTGCACTGCTTTTCTTTGC
GTAGCTCTCTCTCGTTTTCGATACGTGGAGAAACGCTGCCCCTCAGGAGC
TAAAGCGCTGTCTCTAAATGATTTTGCTCTGCGCGCTTTATCTATACCCC
CCCCGCTCGATTCTTTGGTTGGTCTCTCTCTCTCTCGCTTTAGATACGTG
GAGGAGCGGTTTCCTCAGCTGGTTATGCACTGCGCCAAGGTAACGGGGTC
CCTACTCACCGAGGAGCGCATTTTCAAGGAGTATCTCGTGCACTTCCGCC
GCCCGCAGCCCCCTGCCGCCGCCGTGCCGCCCGGCACGACGCCATCGGGC
ACGCCCGTGGCGGCGGCACACACTGCCTCCGCTAACGGATCGGCGAGCAA
GCCTTCGGCGGCACCGGGAGGGGCGGTGCCGGCGGGAGGCGGGAGCGGAG
GAACGGTGGTCGGGGCGAGAGGAGGAGTGTCAGCCTCAGCCGGAGGAGGG
GCACCATCAGCGGACGGCGTCAGAGGAAAAGGCGGGTCCGATCAGCCGGG
CGCGGAGGCGGGGCGTCCTCGCGCTCCTGCCGAGACGGCCGCGCTGCTGC
CCAATGGCGGCGGAGCGCCTGCTGCTGGCGCAGCGTTCACCTCGCCTGGG
AAGAAGTCGGCCAAGACCACCCCCCGCAGCGGAAGGAAGAGCTACACCGC
GGGTGGCGCGGATGGGGCAGGCGGGGACGGCGGGGCCGGAGCAGCGGCCG
CGCGGGTGACCGAGCAGAACGGACCCCGGGGGGAGGGCGCGCTGCAGGAC
GTGCTCGTTTGGAACGAGTCCGGGATGGCGAAGAGCATGGGCTGCAGGTA
CGCTTGGGCGCATATGGGTGTGGCTTCCGGGGTTCGGTTTGGCAGCGGGC
GGGACCGATGTGCGTCGCTGTCGCGTTTGCCGCCTTTTGTGGCCGCGAGC
ACACGCCAGCAGCTGCTGGCTCTGGCATGGGTTTTGGTTTGTGGGGTGGT
TACTCTTCCCATTTTCGACCTGAGACTCTATTTACACCGTTTGCTCTTGT
TTTTTCGCAGGGGATGGTGGCGACATCAAGACCACTGGCAGCGCCGGCTG
GACGTTACGAAGCAGCGGCCTCGTGGGGCGCACCTGAACAAGGCGCTTCA
AGACCCCAAGTACCGGACTCGTCTCTGCAGCCACTGGGAGAACAGCAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12791:259..1557-

>mRNA_E-fasciculatus_F_contig12791.2115.1 ID=mRNA_E-fasciculatus_F_contig12791.2115.1|Name=mRNA_E-fasciculatus_F_contig12791.2115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2016bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12791:259..1557- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGGTTTTGGTTTGCGACAAATATCCGTCCTGCCGGCCTGGTTCTTT
TGCTTGCACTGCTTTTCTTTGCGTAGCTCTCTCTCGTTTTCGATACGTGG
AGAAACGCTGCCCCTCAGGAGCTAAAGCGCTGTCTCTAAATGATTTTGCT
CTGCGCGCTTTATCTATACCCCCCCCGCTCGATTCTTTGGTTGGTCTCTC
TCTCTCTCGCTTTAGATACGTGGAGGAGCGGTTTCCTCAGCTGGTTATGC
ACTGCGCCAAGGTAACGGGGTCCCTACTCACCGAGGAGCGCATTTTCAAG
GAGTATCTCGTGCACTTCCGCCGCCCGCAGCCCCCTGCCGCCGCCGTGCC
GCCCGGCACGACGCCATCGGGCACGCCCGTGGCGGCGGCACACACTGCCT
CCGCTAACGGATCGGCGAGCAAGCCTTCGGCGGCACCGGGAGGGGCGGTG
CCGGCGGGAGGCGGGAGCGGAGGAACGGTGGTCGGGGCGAGAGGAGGAGT
GTCAGCCTCAGCCGGAGGAGGGGCACCATCAGCGGACGGCGTCAGAGGAA
AAGGCGGGTCCGATCAGCCGGGCGCGGAGGCGGGGCGTCCTCGCGCTCCT
GCCGAGACGGCCGCGCTGCTGCCCAATGGCGGCGGAGCGCCTGCTGCTGG
CGCAGCGTTCACCTCGCCTGGGAAGAAGTCGGCCAAGACCACCCCCCGCA
GCGGAAGGAAGAGCTACACCGCGGGTGGCGCGGATGGGGCAGGCGGGGAC
GGCGGGGCCGGAGCAGCGGCCGCGCGGGTGACCGAGCAGAACGGACCCCG
GGGGGAGGGCGCGCTGCAGGACGTGCTCGTTTGGAACGAGTCCGGGATGG
CGAAGAGCATGGGCTGCAGATGCCGGTTTTGGTTTGCGACAAATATCCGT
CCTGCCGGCCTGGTTCTTTTGCTTGCACTGCTTTTCTTTGCGTAGCTCTC
TCTCGTTTTCGATACGTGGAGAAACGCTGCCCCTCAGGAGCTAAAGCGCT
GTCTCTAAATGATTTTGCTCTGCGCGCTTTATCTATACCCCCCCCGCTCG
ATTCTTTGGTTGGTCTCTCTCTCTCTCGCTTTAGATACGTGGAGGAGCGG
TTTCCTCAGCTGGTTATGCACTGCGCCAAGGTAACGGGGTCCCTACTCAC
CGAGGAGCGCATTTTCAAGGAGTATCTCGTGCACTTCCGCCGCCCGCAGC
CCCCTGCCGCCGCCGTGCCGCCCGGCACGACGCCATCGGGCACGCCCGTG
GCGGCGGCACACACTGCCTCCGCTAACGGATCGGCGAGCAAGCCTTCGGC
GGCACCGGGAGGGGCGGTGCCGGCGGGAGGCGGGAGCGGAGGAACGGTGG
TCGGGGCGAGAGGAGGAGTGTCAGCCTCAGCCGGAGGAGGGGCACCATCA
GCGGACGGCGTCAGAGGAAAAGGCGGGTCCGATCAGCCGGGCGCGGAGGC
GGGGCGTCCTCGCGCTCCTGCCGAGACGGCCGCGCTGCTGCCCAATGGCG
GCGGAGCGCCTGCTGCTGGCGCAGCGTTCACCTCGCCTGGGAAGAAGTCG
GCCAAGACCACCCCCCGCAGCGGAAGGAAGAGCTACACCGCGGGTGGCGC
GGATGGGGCAGGCGGGGACGGCGGGGCCGGAGCAGCGGCCGCGCGGGTGA
CCGAGCAGAACGGACCCCGGGGGGAGGGCGCGCTGCAGGACGTGCTCGTT
TGGAACGAGTCCGGGATGGCGAAGAGCATGGGCTGCAGGGGATGGTGGCG
ACATCAAGACCACTGGCAGCGCCGGCTGGACGTTACGAAGCAGCGGCCTC
GTGGGGCGCACCTGAACAAGGCGCTTCAAGACCCCAAGTACCGGACTCGT
CTCTGCAGCCACTGGGAGAACAGCAAGGGGATGGTGGCGACATCAAGACC
ACTGGCAGCGCCGGCTGGACGTTACGAAGCAGCGGCCTCGTGGGGCGCAC
CTGAACAAGGCGCTTCAAGACCCCAAGTACCGGACTCGTCTCTGCAGCCA
CTGGGAGAACAGCAAG
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