mRNA_E-fasciculatus_F_contig12790.2114.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12790.2114.1
Unique NamemRNA_E-fasciculatus_F_contig12790.2114.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: D7FQD8_ECTSI (Hypoxanthine phosphoribosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.540e-24
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSPV 171
            YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTG++ + + PV
Sbjct:  111 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGLTMESLLPV 167
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A7S2V4H8_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4H8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.050e-17
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFI+VKSY+G  STG+VQI+GGD++ L+G++VL+VEDIIDTG++  K+ P
Sbjct:  129 YVPFTFDFIRVKSYEGTESTGNVQISGGDVSRLQGRHVLLVEDIIDTGLTMQKLVP 184
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A2D4BRV0_PYTIN (Hypoxanthine phosphoribosyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRV0_PYTIN)

HSP 1 Score: 79.7 bits (195), Expect = 9.040e-17
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFIKVKSY+G  STG+VQI+G DLA  +GK++L+VEDIIDTG +  K+ P
Sbjct:   92 YVPFTFDFIKVKSYEGTQSTGNVQISGADLAKFKGKDLLLVEDIIDTGKTMSKLVP 147
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: H3GHL0_PHYRM (Hypoxanthine phosphoribosyltransferase n=18 Tax=Phytophthora TaxID=4783 RepID=H3GHL0_PHYRM)

HSP 1 Score: 77.8 bits (190), Expect = 5.230e-16
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSPVVA 177
            YVPFTFDFIKVKSY G  STG+V+++G DLA  +GK++L+VEDIIDTG +  K+ P+++
Sbjct:   95 YVPFTFDFIKVKSYAGTKSTGNVEVSGADLAKFKGKSLLLVEDIIDTGKTMSKLVPMLS 153
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: M4BXR6_HYAAE (Hypoxanthine phosphoribosyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXR6_HYAAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.230e-16
Identity = 36/59 (61.02%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSPVVA 177
            YVPFTFDFIKVKSY+G+ S+G VQ++G DLA  +GK++L+VEDIIDTG +  K+ P+++
Sbjct:   95 YVPFTFDFIKVKSYEGLKSSGDVQVSGADLAKFKGKHLLLVEDIIDTGKTMTKLVPLLS 153
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A067BV47_SAPPC (Hypoxanthine phosphoribosyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BV47_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 6.740e-16
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFIKVKSY G+ STG+VQ++G D+A  +GK++L+VEDIIDTG +  K+ P
Sbjct:   91 YVPFTFDFIKVKSYDGLQSTGNVQVSGADIAKFKGKHLLLVEDIIDTGKTMAKLVP 146
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A3R7KGI1_9STRA (Hypoxanthine phosphoribosyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KGI1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.600e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFI+VKSY G  STG+VQ++G DLA  +GK++L+VEDIIDTG +  K+ P
Sbjct:   95 YVPFTFDFIRVKSYDGTKSTGNVQVSGADLAKFKGKDLLLVEDIIDTGRTMSKLVP 150
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A5D6XK53_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK53_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.950e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFIKVKSY G  STG+VQI+G DLA  +GK++L+VEDIIDTG +  K+ P
Sbjct:  156 YVPFTFDFIKVKSYDGTKSTGNVQISGADLAKFKGKDLLLVEDIIDTGRTMAKLVP 211
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A485K7V7_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7V7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.010e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFIKVKSY G+ STG+VQ++G DL+  +GK++L+VEDIIDTG +  K+ P
Sbjct:   94 YVPFTFDFIKVKSYDGLQSTGNVQVSGADLSKFKGKHLLLVEDIIDTGKTMAKLVP 149
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BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Match: A0A6G0WHP3_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHP3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMSHDKVSP 168
            YVPFTFDFIKVKSY G+ STG+VQ++G DL+  +GK++L+VEDIIDTG +  K+ P
Sbjct:   93 YVPFTFDFIKVKSYDGLHSTGNVQVSGADLSKFKGKHLLLVEDIIDTGKTMAKLVP 148
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12790.2114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQD8_ECTSI2.540e-2487.72Hypoxanthine phosphoribosyltransferase n=1 Tax=Ect... [more]
A0A7S2V4H8_9STRA3.050e-1766.07Hypoxanthine phosphoribosyltransferase n=1 Tax=Fib... [more]
A0A2D4BRV0_PYTIN9.040e-1767.86Hypoxanthine phosphoribosyltransferase n=1 Tax=Pyt... [more]
H3GHL0_PHYRM5.230e-1661.02Hypoxanthine phosphoribosyltransferase n=18 Tax=Ph... [more]
M4BXR6_HYAAE5.230e-1661.02Hypoxanthine phosphoribosyltransferase n=1 Tax=Hya... [more]
A0A067BV47_SAPPC6.740e-1664.29Hypoxanthine phosphoribosyltransferase n=2 Tax=Sap... [more]
A0A3R7KGI1_9STRA7.600e-1664.29Hypoxanthine phosphoribosyltransferase n=3 Tax=Phy... [more]
A0A5D6XK53_9STRA8.950e-1667.86Hypoxanthine phosphoribosyltransferase n=1 Tax=Pyt... [more]
A0A485K7V7_9STRA1.010e-1564.29Hypoxanthine phosphoribosyltransferase n=1 Tax=Aph... [more]
A0A6G0WHP3_9STRA1.400e-1564.29Hypoxanthine phosphoribosyltransferase n=1 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12790contigE-fasciculatus_F_contig12790:3368..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7FQD8
Preferred nameHPRT1
KEGG rclassRC00063,RC00122,RC01331
KEGG koko:K00760,ko:K03119
KEGG ReactionR00190,R01132,R01229,R02142,R05320,R08237,R08238,R08245
KEGG Pathwayko00230,ko00430,ko00920,ko00983,ko01100,ko01110,map00230,map00430,map00920,map00983,map01100,map01110
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0001775,GO:0001906,GO:0001909,GO:0001913,GO:0001975,GO:0002054,GO:0002057,GO:0002060,GO:0002250,GO:0002252,GO:0002376,GO:0002443,GO:0002449,GO:0002456,GO:0002460,GO:0003674,GO:0003824,GO:0004422,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006152,GO:0006163,GO:0006164,GO:0006166,GO:0006168,GO:0006178,GO:0006195,GO:0006584,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006955,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007625,GO:0007626,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009125,GO:0009126,GO:0009128,GO:0009150,GO:0009154,GO:0009158,GO:0009161,GO:0009163,GO:0009164,GO:0009165,GO:0009166,GO:0009167,GO:0009169,GO:0009259,GO:0009261,GO:0009410,GO:0009636,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0014075,GO:0016043,GO:0016358,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0018958,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019953,GO:0021537,GO:0021544,GO:0021756,GO:0021895,GO:0021953,GO:0021954,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030154,GO:0030182,GO:0030900,GO:0031175,GO:0031323,GO:0031325,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032943,GO:0032989,GO:0032990,GO:0033238,GO:0033240,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0036094,GO:0042053,GO:0042069,GO:0042221,GO:0042278,GO:0042417,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042493,GO:0042802,GO:0042803,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0043167,GO:0043169,GO:0043174,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045321,GO:0045915,GO:0045964,GO:0046037,GO:0046038,GO:0046040,GO:0046083,GO:0046084,GO:0046098,GO:0046099,GO:0046100,GO:0046101,GO:0046112,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046434,GO:0046483,GO:0046649,GO:0046651,GO:0046700,GO:0046872,GO:0046983,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051716,GO:0052657,GO:0055086,GO:0060322,GO:0065003,GO:0065007,GO:0070661,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0072523,GO:0080090,GO:0090407,GO:0097159,GO:0097164,GO:0097366,GO:0120036,GO:0120039,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901652,GO:1901653,GO:1901657,GO:1901658,GO:1901659,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.guanine phosphoribosyltransferase activity
EggNOG OGsCOG0634@1,KOG3367@2759
EC1.14.11.17,2.4.2.8
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphoribosyltransferase-like
Ec32 orthologEc-01_006480.1
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.7296376-CDS-E-fasciculatus_F_contig12790:3367..35651622927784.7296376-CDS-E-fasciculatus_F_contig12790:3367..3565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12790 3368..3565 +
1695995693.0041046-CDS-E-fasciculatus_F_contig12790:3367..35651695995693.0041046-CDS-E-fasciculatus_F_contig12790:3367..3565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12790 3368..3565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12790.2114.1prot_E-fasciculatus_F_contig12790.2114.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12790 3368..3565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12790.2114.1

>prot_E-fasciculatus_F_contig12790.2114.1 ID=prot_E-fasciculatus_F_contig12790.2114.1|Name=mRNA_E-fasciculatus_F_contig12790.2114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
YVPFTFDFIKVKSYKGVSSTGSVQITGGDLAALEGKNVLVVEDIIDTGMS
HDKVSPVVAVVVAVV*
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mRNA from alignment at E-fasciculatus_F_contig12790:3368..3565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12790.2114.1 ID=mRNA_E-fasciculatus_F_contig12790.2114.1|Name=mRNA_E-fasciculatus_F_contig12790.2114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12790:3368..3565+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGTGCCTTTCACGTTCGACTTCATCAAGGTCAAGTCTTACAAGGGCGT
CAGCTCGACGGGCAGCGTGCAGATCACGGGCGGCGACCTGGCGGCGCTGG
AGGGGAAGAACGTCCTGGTGGTGGAAGACATCATCGACACGGGTATGTCG
CACGACAAAGTCTCTCCAGTTGTTGCTGTTGTTGTTGCTGTTGTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12790:3368..3565+

>mRNA_E-fasciculatus_F_contig12790.2114.1 ID=mRNA_E-fasciculatus_F_contig12790.2114.1|Name=mRNA_E-fasciculatus_F_contig12790.2114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12790:3368..3565+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGTGCCTTTCACGTTCGACTTCATCAAGGTCAAGTCTTACAAGGGCGT
CAGCTCGACGGGCAGCGTGCAGATCACGGGCGGCGACCTGGCGGCGCTGG
AGGGGAAGAACGTCCTGGTGGTGGAAGACATCATCGACACGGGTATGTCG
CACGACAAAGTCTCTCCAGTTGTTGCTGTTGTTGTTGCTGTTGTGTGATA
CGTGCCTTTCACGTTCGACTTCATCAAGGTCAAGTCTTACAAGGGCGTCA
GCTCGACGGGCAGCGTGCAGATCACGGGCGGCGACCTGGCGGCGCTGGAG
GGGAAGAACGTCCTGGTGGTGGAAGACATCATCGACACGGGTATGTCGCA
CGACAAAGTCTCTCCAGTTGTTGCTGTTGTTGTTGCTGTTGTGTGA
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