mRNA_E-fasciculatus_F_contig1278.2111.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1278.2111.1 vs. uniprot
Match: A0A6H5JK71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK71_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 7.710e-19 Identity = 55/74 (74.32%), Postives = 57/74 (77.03%), Query Frame = -2
Query: 429 RGAVTVFASPLF*SYLHGGAPRVKGLPACLIALALLDARGCLAEGLGDAADESNLGSCALRHRRFFC-KEKFRS 647
R A+ V ASPLF SYLHG APRV L ACL ALALL+ARG LAE LG AADES L SCALRHRRFFC E FRS
Sbjct: 21 RRALAVVASPLFWSYLHGVAPRVNVLSACLGALALLNARGYLAERLGHAADESKLRSCALRHRRFFCVNEIFRS 94
BLAST of mRNA_E-fasciculatus_F_contig1278.2111.1 vs. uniprot
Match: D8LTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP6_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.800e-18 Identity = 50/64 (78.12%), Postives = 52/64 (81.25%), Query Frame = -2
Query: 447 VTVFASPLF*SYLHGGAPRVKGLPACLIALALLDARGCLAEGLGDAADESNLGSCALRHRRFFC 638
+ V ASPLF SYL G APRV LPACL+ALALLDARG LAEGLG A DES L SCALRHRRFFC
Sbjct: 1 MAVVASPLFWSYLLGWAPRVNVLPACLVALALLDARGYLAEGLGHAVDESKLRSCALRHRRFFC 64 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1278.2111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1278.2111.1 >prot_E-fasciculatus_F_contig1278.2111.1 ID=prot_E-fasciculatus_F_contig1278.2111.1|Name=mRNA_E-fasciculatus_F_contig1278.2111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1642bp MPAAEISSTAHFRDAVALYSQHIARPPSVSNPAPERGRRGQRRPKSASAAback to top mRNA from alignment at E-fasciculatus_F_contig1278:332..8607- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1278.2111.1 ID=mRNA_E-fasciculatus_F_contig1278.2111.1|Name=mRNA_E-fasciculatus_F_contig1278.2111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1278:332..8607- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1278:332..8607- >mRNA_E-fasciculatus_F_contig1278.2111.1 ID=mRNA_E-fasciculatus_F_contig1278.2111.1|Name=mRNA_E-fasciculatus_F_contig1278.2111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=9852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1278:332..8607- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |