mRNA_E-fasciculatus_F_contig12776.2109.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12776.2109.1
Unique NamemRNA_E-fasciculatus_F_contig12776.2109.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12776.2109.1 vs. uniprot
Match: A0A6H5L054_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L054_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 4.070e-73
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:   16 RVDGEDINSDDTYTLETIEVFKAEEPGPNEYDEVGSQFEITTAGNSGLCGVYMDTTDGSTEYLIDLNRQSDGSLRAAGICGVFRDWDEADRAELEEGCDDYDPCNGECGEFQVC 357
            RVDGEDINSDD YTLETIEVFKAE+PGPNEYDE GSQFEITTAGNSGLCGVYMD  DGSTEYLIDLNRQSDGSLRAAGICGVFR+WDEADRAELEEGCDDYDPCNGECGEFQVC
Sbjct:    9 RVDGEDINSDDIYTLETIEVFKAEDPGPNEYDEAGSQFEITTAGNSGLCGVYMDA-DGSTEYLIDLNRQSDGSLRAAGICGVFREWDEADRAELEEGCDDYDPCNGECGEFQVC 121
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BLAST of mRNA_E-fasciculatus_F_contig12776.2109.1 vs. uniprot
Match: D7FR36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR36_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 8.250e-72
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:  184 DGSTEYLIDLNRQSDGSLRAAGICGVFRDWDEADRAELEEGCDDYDPCNGECGEFQVCSRSYFSYSAASYFCSDTCDPSPCSEGEECTLTYPPCSESDVCGPVATCGEEEG 516
            DGSTEYLIDLNRQSDGSLRAAGICGVFR+WDEADR ELEEGCDDYDPCNGECGEFQVCSRSYFSYS ASYFCSDTCDPSPCSEGEECTLTYP CS S+VCGPVA CGE +G
Sbjct:    4 DGSTEYLIDLNRQSDGSLRAAGICGVFREWDEADRVELEEGCDDYDPCNGECGEFQVCSRSYFSYSDASYFCSDTCDPSPCSEGEECTLTYPVCSASEVCGPVADCGEGDG 114
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BLAST of mRNA_E-fasciculatus_F_contig12776.2109.1 vs. uniprot
Match: D7G2B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B7_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 4.820e-8
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:  325 CNGECGEFQVCSRSYFSYSAASYFCSDTCDPSPCSEGEECTLTYPPCSESDVCGPVATCGEEEGGETPAPSST 543
            C G C EFQ C     +++   Y+CS  CDPSPC +GEECTL    C+   +CG  + C       +P P++T
Sbjct:  273 CEGRCSEFQECLFYSGNFAEDQYYCSAVCDPSPCGDGEECTLVPASCAPGSICGKRSIC-------SPLPAAT 338
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12776.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L054_9PHAE4.070e-7394.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR36_ECTSI8.250e-7291.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2B7_ECTSI4.820e-839.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12776contigE-fasciculatus_F_contig12776:116..3173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTissue inhibitor of metalloproteinases-like, OB-fold
Ec32 orthologEc-09_003640.1
Exons4
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12776.2109.1prot_E-fasciculatus_F_contig12776.2109.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12776 116..3173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927783.6897423-CDS-E-fasciculatus_F_contig12776:115..2021622927783.6897423-CDS-E-fasciculatus_F_contig12776:115..202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 116..202 -
1695995692.5683455-CDS-E-fasciculatus_F_contig12776:115..2021695995692.5683455-CDS-E-fasciculatus_F_contig12776:115..202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 116..202 -
1622927783.7013888-CDS-E-fasciculatus_F_contig12776:1371..15481622927783.7013888-CDS-E-fasciculatus_F_contig12776:1371..1548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 1372..1548 -
1695995692.577924-CDS-E-fasciculatus_F_contig12776:1371..15481695995692.577924-CDS-E-fasciculatus_F_contig12776:1371..1548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 1372..1548 -
1622927783.713563-CDS-E-fasciculatus_F_contig12776:2420..25471622927783.713563-CDS-E-fasciculatus_F_contig12776:2420..2547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 2421..2547 -
1695995692.5874739-CDS-E-fasciculatus_F_contig12776:2420..25471695995692.5874739-CDS-E-fasciculatus_F_contig12776:2420..2547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 2421..2547 -
1622927783.7266273-CDS-E-fasciculatus_F_contig12776:2949..31731622927783.7266273-CDS-E-fasciculatus_F_contig12776:2949..3173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 2950..3173 -
1695995692.5996215-CDS-E-fasciculatus_F_contig12776:2949..31731695995692.5996215-CDS-E-fasciculatus_F_contig12776:2949..3173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12776 2950..3173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12776.2109.1

>prot_E-fasciculatus_F_contig12776.2109.1 ID=prot_E-fasciculatus_F_contig12776.2109.1|Name=mRNA_E-fasciculatus_F_contig12776.2109.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=205bp
VRSLGRVDGEDINSDDTYTLETIEVFKAEEPGPNEYDEVGSQFEITTAGN
SGLCGVYMDTTDGSTEYLIDLNRQSDGSLRAAGICGVFRDWDEADRAELE
EGCDDYDPCNGECGEFQVCSRSYFSYSAASYFCSDTCDPSPCSEGEECTL
TYPPCSESDVCGPVATCGEEEGGETPAPSSTPGPETAPPIASDEEEEVTL
PPTNE
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mRNA from alignment at E-fasciculatus_F_contig12776:116..3173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12776.2109.1 ID=mRNA_E-fasciculatus_F_contig12776.2109.1|Name=mRNA_E-fasciculatus_F_contig12776.2109.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3058bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12776:116..3173- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCGTTCTCTCGGCAGGGTCGACGGTGAAGACATCAACTCCGATGACAC
GTACACCCTCGAGACGATAGAGGTCTTCAAGGCGGAGGAGCCAGGCCCTA
ACGAGTACGACGAGGTCGGGAGTCAGTTCGAGATCACTACGGCGGGGAAC
TCGGGTCTCTGCGGGGTGTACATGGATACCACGGACGGATCGACAGAGTA
CCTTATCGACCTCAACCGACAGAGGTACTTGCTTTGTTTTGTTTTGTTTT
TTCTGGATGTACTGTGTACTGTAGCGCCCGTACTTGAGAAGTTGAACTCT
TAATGTAGCCTCGAAAAACTAAAAATCTAAGATTTTGAGCGCTATCTGTG
ATGCCGGATATGAATCTCTAAACTCAAACCTATATGGCGGCCCATTCGTA
GCATAACCCAAGGAACTAACAACCAACCTCAGCCTCGGCCAATTCTAGAG
GTTCATAAGGACGGGCGCTTACTCACCAAATCTCTGTCCGTAGAGCAGCG
ACCGAGGTCTCCGTGCTGTCGTGCTCTGTGGCGCGTAATCTTTCGCTCCA
ACCACACTTTCTGTCTTTCTCTCTCTCTCTCTCTCTGTCGTCGTCGTCGT
TGTTGTTGATGTTGATGTCGTTGCAGCGACGGAAGTCTTCGCGCTGCCGG
TATCTGCGGCGTGTTCCGGGATTGGGACGAGGCAGACCGGGCAGAGCTGG
AGGAGGGGTGCGACGACTATGACCCCTGCAACGGGGAATGCGGCGAGTTT
CAGGTAGGTGTGCTTCTGCAACAACCACAACAACGAGGAGGAGTGCGAGA
GACGTACAACGGAGCACGCTTTCTGCCCACCAACTAGACCATTATGGCGT
GCGACAATTCGCGAGACGAGCACACACGCCTTTGCCGACCAAACAGACCA
TATGGCGCGTGAAAAATTCGCGGGGCACGTACGCACGCCTGGTGCCGATT
GGCGTGCGAAAAAATCGTTTATTTTTTTGGTTGCATCTGCACTCCTCGCC
ACGGGGCTACACTGGTGTACCACTGCTGTCGTCGATGACCTACTTGGTTG
TGCAAACGACCATCCCAGACCACTTACCGGCCTTCTCGCAAATGCTGTAG
CTTTCTTGCCACACACAAGCACCAAATACCAACACCATACATAGCCAAAC
ACACCAGCGAGTCATCCATTCAACCAAATCGAAGCGGCTGCACGCCGTTG
TGCTCCGTATCACCCTCCCGACCCGGCCATGTCTGCCCCGATTAGCGCGG
GGTGGTGCTTCGACAGGCCTGCCTGCAGCCCTGCCTCTTTCAGCGTGTGT
GTTTTACCCATTCTACGGGACCCCTTCTCTTGGCTAATGCCGCAACGCTC
TGCCGGTACCCCCTCACACCATCGCCGAACTGCTCCATCCAGCAACATCA
GTCAACGTTTTTTTTACTCATTCTGCGGAACCCCTTTCTCGCTAAAGCCG
CAACACTCTGCCAGTACGAACACCATCGCGGAAGTGCCACTCAACCGTTT
TTTTACCCATTCTCCGGGACCCCTTCACGAACCCACGGGAGCCCCCCCCC
CTTTGGCAACGCACACCTACCCTCCACGGTGTTGATACGCACACTGCGGG
CCCCCCTCGTCACAACCATTTCTAGGTGTGTTCCCGAAGCTACTTCTCCT
ATTCGGCGGCCTCGTACTTCTGCTCGGACACGTGCGACCCTAGCCCTTGC
TCGGAAGGCGAGGAGTGCACCCTCACGTATCCCCCGTGCTCGGAGTCGGA
CGTGTGCGGCCCCGTGGCCACCTGCGGGGAGGAGGAGGGGGGCGAGACCC
CGGTGAGTCGTCGGGGAAGCGAGCGCTGCGCGTGTGTTTTTTATTGTTGG
CATCGACCGCGCGAACCGGCTGACCGATGAGATGAGAAGAGAAGACGTCA
GTCTCAGGGTTGAAACATACAAAATTCTTCGAAAGCTTACCATGATCTGC
GTCCCCGTGAGGGGAGTACTCTCCGAAGTACAGACAGGAGCGGTGAGCGG
TAGCAATACCTGTGTGTGTTGGGTGAACTACGCCGAGGAATCAAATATGT
AGCATATCATATACGTATGTCTTGGGGTTGTATTTAGGTGAATCATCCCC
GAGATATCATTTCCGTATATCTTGGGGTTGTGTTTGGTGAATCATCCCCG
AGATGTCATTTCCGTGTGTCTTGATTGTATCTTGGTGAACTATCCCCGAG
ATATCATTACCGTGTGTCTTGATTGCATCTTGGTTAATCATCCCCGACAT
GTCATTTTAGTTTGTGTGTCTTGCGTTGTAGGCGAATGAATGAATGAATC
ACCCCGAGAGGTACGTTGGCGTGTCGAATTCTCTCCCACGACAAGACGAG
ACAGGACAAGACTTGCTTGAACCCCGCAAAGACCCGCGGAGGACCAGCAA
CAAACGGTACTCTGACGCACGCGTCGAATGAGCTGGTTTTGTGTGGGTGC
GGGAGTTCTTGGGGCGATAAAGGGGGCGAAATAAGGCTGCGACTGCGTGC
GTGCGTTCGAAAGGTTCGCAAAAGACACCCGGAAAAGTCATTCCATGCGA
CCCCTGGTCTCGGAGCGGGTTGTAGGTGAATTAAATACCCCGAGGGGTTC
TTGTCGTGTGTCGTGTCTGGGGTTGTGAGGCGATCGATCATCCCGTGATT
GTCCTTTGTCTTTACTGCTTTCCTCTTGTGCTGTGTAAACAAACACCACA
AGTTGGTAAAATAAGCTCTATCCGTGGATTCAATGTCCACGATATGTTCG
TGGTGTTGTATAATCCCTGTGTATCGACTGATCCTCGCGCAACATACATA
CGGTGAACTCTCCTCTCCCACATACACCCCTCCCTGCCCTCGCACCCACC
TGCTCTAGTCTAACTCCTCGCCCTCGTGTGCCGTCGTTGTTCTACTTGGA
ACCAACCCCCTTCCCCTGTGCGGCTGCCTGACGACCCGTTCCGAACACAT
CAAAAAATCTACACGAACAAGGCACCCTCCTCTACACCCGGTCCCGAAAC
GGCCCCGCCAATTGCGTCCGATGAGGAGGAGGAGGTAACCCTCCCGCCAA
CCAATGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12776:116..3173-

>mRNA_E-fasciculatus_F_contig12776.2109.1 ID=mRNA_E-fasciculatus_F_contig12776.2109.1|Name=mRNA_E-fasciculatus_F_contig12776.2109.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12776:116..3173- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCGTTCTCTCGGCAGGGTCGACGGTGAAGACATCAACTCCGATGACAC
GTACACCCTCGAGACGATAGAGGTCTTCAAGGCGGAGGAGCCAGGCCCTA
ACGAGTACGACGAGGTCGGGAGTCAGTTCGAGATCACTACGGCGGGGAAC
TCGGGTCTCTGCGGGGTGTACATGGATACCACGGACGGATCGACAGAGTA
CCTTATCGACCTCAACCGACAGAGGTTCGTTCTCTCGGCAGGGTCGACGG
TGAAGACATCAACTCCGATGACACGTACACCCTCGAGACGATAGAGGTCT
TCAAGGCGGAGGAGCCAGGCCCTAACGAGTACGACGAGGTCGGGAGTCAG
TTCGAGATCACTACGGCGGGGAACTCGGGTCTCTGCGGGGTGTACATGGA
TACCACGGACGGATCGACAGAGTACCTTATCGACCTCAACCGACAGAGCG
ACGGAAGTCTTCGCGCTGCCGGTATCTGCGGCGTGTTCCGGGATTGGGAC
GAGGCAGACCGGGCAGAGCTGGAGGAGGGGTGCGACGACTATGACCCCTG
CAACGGGGAATGCGGCGAGTTTCAGCGACGGAAGTCTTCGCGCTGCCGGT
ATCTGCGGCGTGTTCCGGGATTGGGACGAGGCAGACCGGGCAGAGCTGGA
GGAGGGGTGCGACGACTATGACCCCTGCAACGGGGAATGCGGCGAGTTTC
AGGTGTGTTCCCGAAGCTACTTCTCCTATTCGGCGGCCTCGTACTTCTGC
TCGGACACGTGCGACCCTAGCCCTTGCTCGGAAGGCGAGGAGTGCACCCT
CACGTATCCCCCGTGCTCGGAGTCGGACGTGTGCGGCCCCGTGGCCACCT
GCGGGGAGGAGGAGGGGGGCGAGACCCCGGTGTGTTCCCGAAGCTACTTC
TCCTATTCGGCGGCCTCGTACTTCTGCTCGGACACGTGCGACCCTAGCCC
TTGCTCGGAAGGCGAGGAGTGCACCCTCACGTATCCCCCGTGCTCGGAGT
CGGACGTGTGCGGCCCCGTGGCCACCTGCGGGGAGGAGGAGGGGGGCGAG
ACCCCGGCACCCTCCTCTACACCCGGTCCCGAAACGGCCCCGCCAATTGC
GTCCGATGAGGAGGAGGAGGTAACCCTCCCGCCAACCAATGAGGCACCCT
CCTCTACACCCGGTCCCGAAACGGCCCCGCCAATTGCGTCCGATGAGGAG
GAGGAGGTAACCCTCCCGCCAACCAATGAG
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