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Homology
BLAST of mRNA_E-fasciculatus_F_contig12774.2108.1 vs. uniprot
Match: D8LBZ1_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ1_ECTSI) HSP 1 Score: 431 bits (1109), Expect = 2.180e-140 Identity = 214/227 (94.27%), Postives = 216/227 (95.15%), Query Frame = 1
Query: 1 PPLQTNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDARIVANTADAILVPVLASPSISRSVCAVKLLANSAFSHLCLGNAEDAMRAVRRFSAILKEFPGIVRRVKLLLVFPPWRHCFHWMAGMLESAGLRDLYDGLRDGLAKINMTSMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFGYFHIPHHCPQFGPAAEAAAASGCKSTTFRA 681
PPL+TNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDARIVANTADAILVPVLASPSISRSVCAVKLLANSAFSHLCLGNAE AMRAVRRFSAILKEFPGIVR FPPWRHCFHWMAGMLESAGLRDLYDGLRDGLA INM SMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFG+FHIPHHCPQFGPAAEAAAASG KSTTFRA
Sbjct: 606 PPLKTNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDARIVANTADAILVPVLASPSISRSVCAVKLLANSAFSHLCLGNAEYAMRAVRRFSAILKEFPGIVR-------FPPWRHCFHWMAGMLESAGLRDLYDGLRDGLATINMKSMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFGFFHIPHHCPQFGPAAEAAAASGGKSTTFRA 825
BLAST of mRNA_E-fasciculatus_F_contig12774.2108.1 vs. uniprot
Match: A0A6H5JQB9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB9_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 1.410e-138 Identity = 211/227 (92.95%), Postives = 215/227 (94.71%), Query Frame = 1
Query: 1 PPLQTNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDARIVANTADAILVPVLASPSISRSVCAVKLLANSAFSHLCLGNAEDAMRAVRRFSAILKEFPGIVRRVKLLLVFPPWRHCFHWMAGMLESAGLRDLYDGLRDGLAKINMTSMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFGYFHIPHHCPQFGPAAEAAAASGCKSTTFRA 681
PP++TNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDAR VANTADAILVPVLASP+ISRSVCAVKLLANSAFSHLCLGNAE AMRAVRRFSAIL+EFPGIVRR FPPWRHCFHWMAGMLESAGLRDLYDGLRDGLA INM SMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFG FHIPHHCPQFGPAAEAAAASG KSTTFRA
Sbjct: 571 PPMKTNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDARDVANTADAILVPVLASPTISRSVCAVKLLANSAFSHLCLGNAEAAMRAVRRFSAILEEFPGIVRRTG----FPPWRHCFHWMAGMLESAGLRDLYDGLRDGLATINMKSMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFGSFHIPHHCPQFGPAAEAAAASGGKSTTFRA 793
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 681 |
| Cds size | 681 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12774.2108.1 >prot_E-fasciculatus_F_contig12774.2108.1 ID=prot_E-fasciculatus_F_contig12774.2108.1|Name=mRNA_E-fasciculatus_F_contig12774.2108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=227bp
PPLQTNQVLFVGDTRILEVSMGVDCSCISVMCKAVAGKPWAEIKEDARIV
ANTADAILVPVLASPSISRSVCAVKLLANSAFSHLCLGNAEDAMRAVRRF
SAILKEFPGIVRRVKLLLVFPPWRHCFHWMAGMLESAGLRDLYDGLRDGL
AKINMTSMRNLPEFGKGAHDIMCKCSHFRCQATHRALAEHAKLDPFGYFH
IPHHCPQFGPAAEAAAASGCKSTTFRA back to topmRNA from alignment at E-fasciculatus_F_contig12774:21..3367+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12774.2108.1 ID=mRNA_E-fasciculatus_F_contig12774.2108.1|Name=mRNA_E-fasciculatus_F_contig12774.2108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3347bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12774:21..3367+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCTCTCCAGACGAACCAGGTGCTGTTCGTGGGAGACACGCGGATCTT
GGAGGTGTCGATGGGGGTGGACTGCTCCTGCATTAGTGTGATGTGCAAGG
CGGTGGCGGGGAAGCCGTGGGCGGAGATCAAGGAGGACGCTCGGATCGTG
GCCAACACTGCCGACGCTATCCTCGTCCCGGTGTTGGGTGAGTCAGCAGT
CACCTTAACCTTCTTGGCCCTTTTGTGTTTGAAACGTGACACTTTTTTAC
TGCCTGCGGTGTTTGCCTCGAATGGTTAAGAGTCTCTATTTCGGTTGTGT
GTATATTTTCTGATCTTTGATTGTTAGTTTTACTGTTTTCTGAACACACG
TGTTCCTTGTGGTGGTGTAGAAAAGAAAAGAACGGGTTAGTCGTGCTTCA
TTCACTCTCGCTCGCGTTTTTACGTTGCTGCTGCTTCTAGTTAAGATGGA
AATTGATGGCCAGCACCGCTCGGCGGTTTCCAGCCCTCCGACAAAACCAC
GGGTCGACCATCTGCTGGTACGGTTTTCCAAGGCACATCTTACCACGGTG
TTCCCCGAAGAGCCGCTGGCGATCTTCAGAAGAAGTATCATAGCGGCACA
CATACATCCTCTCCTACCCACGCCTGCGGCTCTAACGTTGAAGTCTCCCC
GGCGCACTTTTTTTTTTTTTTTGCGTCTTTCGCCCCCCCCCCGGGGGGCT
CCGTGGCATGTATCTGGACTTCTTCCCAGCCTCCCCGAGCATCTCGCGGT
CCGTCTGCGCCGTGAAGCTCCTGGCGAACTCTGCCTTCTCGCACCTCTGC
CTCGGCAACGCGGAAGACGCGATGAGGGCCGTCCGTCGGTTCTCCGCCAT
CCTGAAGGAGTTCCCCGGTATCGTCAGGCGAGTTAAACTCTTGCTTGTGT
TCCTTCTTTTAGGTAGCACCCTTGGCAGTTTTTTTTTTGTTCGCGTTAGT
AACCTGTTGGATGAAGCTTGCAATTTGGGGGAAGTTGGGTTGGGGTAAGG
GGTATAGGGTCTGCGTGCCCCTTCCCTGTGTTTTTTTCGCCGTATGATCG
ACGTAAATTATCGCGAAGGCGATCATTTAGTTCGTTCCGTTTCGCGGCGG
CGGGATGTGCTGGTGTGGTGTGGTTTGGTTCGGGAGGGGGGGGGGAGGGT
TGCCGGTGGTCTTTAACTAGCACACTTGGTGCGTTTTGGTGAATGGGAAG
TACATATGTACCTCGTCTGACGAATGTCAGAAGGTGTAAGGACCGATGTG
GGGAATGAATGGGGTGTTACATACCAACCTGGTGCTTGGTTGGATGCTCG
CCTGCCGTGTTGTGATGATGTGACAGGTTTCCGCCATGGAGGCACTGCTT
TCACTGGATGGCGGGGATGCTCGAGTCTGCGGGGCTTCGCGACCTGTACG
ATGGCTTGAGAGACGGGCTCGCCAAGATCAACATGACGTGAGTTGTACGG
GAGTATTAACGTGAAGTGAATTGTATGCCACGATCAACATGAAGTGAGTT
GTATGCCAAGATAAACATGAACGTGAGTTGTACGGGAGTATTGACATGAA
GTGAGTTGTATGTCATGATCAATATGACGTGAGTTGTATGTTATGATCAA
CATGAAGTGTGTTGTATGTCATGATCAATATGACGTGAGTTGTATGTTAT
GATCAATATGACGTGAGTTGTATGCAACATGAAGTGAATTGTACGGGAGT
ATCGTATTAACATGTGCACCGGTCGTCCCGCTTTGAGGACGCTCACTTCC
CGACTTAAGGAATAATATGTGTCCCCTGTTTAAGGACTCACTCCCGCCCT
TTTACAAGTAAGAATCCGCAGTTTAGGAATATGGTGCCCCGTAGAATGTA
CAAAAATAAGGGGTGTATAGTCAACTTCCCCGCTCTAAGGACACTTTTTT
GATCAAGAGCAAGCATTCAAGGGCAACCACGAGGAGTGCACTCAAAGCGG
GGACAACTGTGCTGTATTTTTAAGATGGTGGTGATTTTGCCGCCGCTGGC
TTGGGGTACGTCTCCCACTGCTGTTGTAGGCATGCGCACCGCTACAGTAG
CATGTCCGAGGTGTTTCAGTTTCTCAGTTTCTCGTCATGATTTTGTCTGG
GGTTCCCTTCTTTCGCCGGAGAGGGTGTGTACCAATCGTTCCGGTTGCCG
TGCCCCCCCTCCCCCGGTGGTGAGGAAGTGAAAGCAGGAAACGAACACGA
CATGGCGCAAGGGTTGTCGATGATGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTGTGGCTCACTTTATCCTCCGTCTCGGCAGTCGCCTTACCTGTAC
GTGCTTGTTTTTGACTCTTTGTGGGGTATCTTATCTCCGTTTGTATCACA
CTAGGAGCATGCGAAATCTCCCGGAGTTTGGGAAGGGGGCTCACGACATC
ATGTGCAAGTGCTCGCACTTCCGGTGCCAGGTGGGACGTGATGTCAGCTT
AAACTTTGTCGGTGTACTGCTGTACGCCTGCCGTTCGCTTCCCCTTCCTT
AAAATAATGTTGCTGTTGGGTATCATCGCATGCCATGAAAACCTAGCCTG
TTGCTGGATTGTTTTTTTGAATTTCTTGCTTGTGGTGTGTGTTTTTGTAA
TTTTCAGTGTTGACAACGCGCGTTGACCAAAAAATTAAAACTATCCAAAA
ATTATCCCTCCCCAAAACCAAAAACTAAGACTCGTACAGCAGTGTAGTAC
TTGCCTGCTGTGCACAGCAGCAGTAGTCTATGGAGTACATGGCACACTTC
CGGCTGAAAAAAGTGTACCATATGAAAAAACTGAAGCACTTGAAACGTGA
GGGACAAACCTGATCAGGGCAGGAAATCCAAAACTCTGTGGTCTCTACTG
TAGTCGATGCAAAAACGCGTTGTTTTTGTTTAACACTTTCGGAACACTTT
TGGAACACTTTTGGAACACATCTGCGGCGCGCGAGAAGATCGTGCATCGT
GCATCCGGGATAGGGAGGGCAAATCCATCATCTGCGTGTTGTGGGTATTT
TTTTATTTTCAGTTTTGGGTAGGCAATTTTGTACAACATGCGTCAAAGAG
GCAGAAAACGAAATTGTTGCAGGCAGCAAGTAGGGCATCTAACCGTCTCT
GCATGACCCAACTACCCAGCAAGAATGCTATATTGTACAGCTAGTGCCCG
TTGGTGTTACCCCCCAGTTTGTCGCTGCTGACCCCTTACCGCCCTTGGCA
TCAACGCAGGCGACACATCGGGCTCTTGCGGAGCACGCCAAGCTCGACCC
GTTCGGGTACTTCCACATCCCGCACCACTGCCCGCAGTTCGGACCGGCGG
CGGAAGCGGCTGCGGCGAGCGGTTGCAAGTCGACGACCTTCCGTGCT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12774:21..3367+ >mRNA_E-fasciculatus_F_contig12774.2108.1 ID=mRNA_E-fasciculatus_F_contig12774.2108.1|Name=mRNA_E-fasciculatus_F_contig12774.2108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12774:21..3367+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCTCTCCAGACGAACCAGGTGCTGTTCGTGGGAGACACGCGGATCTT
GGAGGTGTCGATGGGGGTGGACTGCTCCTGCATTAGTGTGATGTGCAAGG
CGGTGGCGGGGAAGCCGTGGGCGGAGATCAAGGAGGACGCTCGGATCGTG
GCCAACACTGCCGACGCTATCCTCGTCCCGGTGTTGGCCCCCTCTCCAGA
CGAACCAGGTGCTGTTCGTGGGAGACACGCGGATCTTGGAGGTGTCGATG
GGGGTGGACTGCTCCTGCATTAGTGTGATGTGCAAGGCGGTGGCGGGGAA
GCCGTGGGCGGAGATCAAGGAGGACGCTCGGATCGTGGCCAACACTGCCG
ACGCTATCCTCGTCCCGGTGTTGGCCTCCCCGAGCATCTCGCGGTCCGTC
TGCGCCGTGAAGCTCCTGGCGAACTCTGCCTTCTCGCACCTCTGCCTCGG
CAACGCGGAAGACGCGATGAGGGCCGTCCGTCGGTTCTCCGCCATCCTGA
AGGAGTTCCCCGGTATCGTCAGGCGAGTTAAACTCTTGCTTGTCCTCCCC
GAGCATCTCGCGGTCCGTCTGCGCCGTGAAGCTCCTGGCGAACTCTGCCT
TCTCGCACCTCTGCCTCGGCAACGCGGAAGACGCGATGAGGGCCGTCCGT
CGGTTCTCCGCCATCCTGAAGGAGTTCCCCGGTATCGTCAGGCGAGTTAA
ACTCTTGCTTGTGTTTCCGCCATGGAGGCACTGCTTTCACTGGATGGCGG
GGATGCTCGAGTCTGCGGGGCTTCGCGACCTGTACGATGGCTTGAGAGAC
GGGCTCGCCAAGATCAACATGACGTTTCCGCCATGGAGGCACTGCTTTCA
CTGGATGGCGGGGATGCTCGAGTCTGCGGGGCTTCGCGACCTGTACGATG
GCTTGAGAGACGGGCTCGCCAAGATCAACATGACGAGCATGCGAAATCTC
CCGGAGTTTGGGAAGGGGGCTCACGACATCATGTGCAAGTGCTCGCACTT
CCGGTGCCAGGAGCATGCGAAATCTCCCGGAGTTTGGGAAGGGGGCTCAC
GACATCATGTGCAAGTGCTCGCACTTCCGGTGCCAGGCGACACATCGGGC
TCTTGCGGAGCACGCCAAGCTCGACCCGTTCGGGTACTTCCACATCCCGC
ACCACTGCCCGCAGTTCGGACCGGCGGCGGAAGCGGCTGCGGCGAGCGGT
TGCAAGTCGACGACCTTCCGTGCTGCGACACATCGGGCTCTTGCGGAGCA
CGCCAAGCTCGACCCGTTCGGGTACTTCCACATCCCGCACCACTGCCCGC
AGTTCGGACCGGCGGCGGAAGCGGCTGCGGCGAGCGGTTGCAAGTCGACG
ACCTTCCGTGCT back to top
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