mRNA_E-fasciculatus_F_contig12761.2102.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12761.2102.1
Unique NamemRNA_E-fasciculatus_F_contig12761.2102.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12761.2102.1 vs. uniprot
Match: A0A6H5KVB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB6_9PHAE)

HSP 1 Score: 758 bits (1958), Expect = 6.830e-269
Identity = 490/617 (79.42%), Postives = 516/617 (83.63%), Query Frame = 1 
Query:   55 MRSSLGLPDAYCDVFDRIESRGAAWLVAAGHVLLHAFDPPQKGDA-AASDSSSSSKLCNDGQGAGGRRATSGEGCDGNRDEDEERREE----QYRRLLDNCLEPSWYEKKSEKTAAT-AVIEAVGGKAIPALTAALTRLANSSASATSSLLSSTRSAKNKSIGQASSLAVTAVSQAGSPDNNLQEQPRPSSTPTSPQTMTPLSLHSSPGTGRRRRSRSPSRRSHRQGGNRTGTRSPE-KTRLQATTAVGPGGKTCAVCLRRSSPAAMCPKCGRRAAKALKDREGSRRARVILVPYGGHFGVGEADALQREGDAVKRWVRLLDDETGANFYHNVHYGSSVWKSGIELPKPAPVVKAARRRRKIGDGGGGV-AVVGSPKSAASVPGSTTPXASGSPAARALPMERAATSPRAIGMAAPGSSIVDRRALLRKTKTAFSVASMAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV--NGTSSPRPIIKPAIKKPAAASSXXXXXXX-QRNASASPTAAAAASPGRNRVVVRDAGDSEPEVVLDAHRRIYPPFRLVSWEDVEAAA-AAESAGLKGVSPRPGTGVSGRKSHSRGTPGDSAGSGRRPRLTTAVTKGG 1869
            M SSLGLP+AYCD+FDRIESRGAAWLVA GH+LLHA DPP +GDA AA   SSSS LCNDG+ AGGRRA SGEG DG R +D +        QYRRLLDNCLEPSW+EKKSEKTAAT  VIEAVGGK +P+LTAALTRL NSS SATSS+  STRSAKNKSIGQ SS AVT V Q GSPDNNLQ +PRP STP SPQTMTPLSL SS GTGRRRRSRSPSRRSHRQGGN TGTRSP   TRL ATTAV PGGKTCAVCLRRSSPAAMC KCGRRAAKALKDR GSR+ARVILVPYGGHFGVGEADALQREGD+VKRWVRLLDDETGA+FYHNVHYGSSVWKSGIELPKPAPVVKAAR             AVVGSP SAASVP STTP A GSPAARALPM RAAT+PRA+GMAA GS IV R AL+R+T  A S ASMAALRA     XXXXXXXXXXXXXXXXXXXXXXXXXXXX    GTSSPR II+ A++K AA SS        Q+NASASPTAAAA SPGRNRVVVRDAGD+EPEVVLDAHRRIYPPFRLVSWEDVEAAA AAE AG+KGVSPRPGTGVSGRKS+S GT GDSAG GRRPRLTTAVTKGG
Sbjct:    1 MWSSLGLPNAYCDIFDRIESRGAAWLVATGHLLLHALDPPPRGDAPAAGSDSSSSNLCNDGKDAGGRRAMSGEGRDGGRGDDGQXXXXXXXXQYRRLLDNCLEPSWHEKKSEKTAATKTVIEAVGGKEMPSLTAALTRLTNSSTSATSSMPDSTRSAKNKSIGQVSSPAVT-VPQEGSPDNNLQAKPRPPSTPPSPQTMTPLSLPSSAGTGRRRRSRSPSRRSHRQGGNSTGTRSPAANTRLPATTAVEPGGKTCAVCLRRSSPAAMCRKCGRRAAKALKDRAGSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXXAVVGSPNSAASVPRSTTPPAPGSPAARALPMARAATNPRAMGMAASGS-IVHRTALVRRTMMALSTASMAALRAAAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTSSPRTIIERAMEKAAAVSSPASSPSPPQKNASASPTAAAA-SPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAGMKGVSPRPGTGVSGRKSYSHGTSGDSAGRGRRPRLTTAVTKGG 614
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12761.2102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVB6_9PHAE6.830e-26979.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12761contigE-fasciculatus_F_contig12761:17..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000720.1
Exons1
Model size1875
Cds size1875
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927783.137295-CDS-E-fasciculatus_F_contig12761:16..18911622927783.137295-CDS-E-fasciculatus_F_contig12761:16..1891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12761 17..1891 +
1695995692.2311397-CDS-E-fasciculatus_F_contig12761:16..18911695995692.2311397-CDS-E-fasciculatus_F_contig12761:16..1891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12761 17..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12761.2102.1prot_E-fasciculatus_F_contig12761.2102.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12761 17..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12761.2102.1

>prot_E-fasciculatus_F_contig12761.2102.1 ID=prot_E-fasciculatus_F_contig12761.2102.1|Name=mRNA_E-fasciculatus_F_contig12761.2102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=625bp
GSRYWLRRRRPAFERGVDMRSSLGLPDAYCDVFDRIESRGAAWLVAAGHV
LLHAFDPPQKGDAAASDSSSSSKLCNDGQGAGGRRATSGEGCDGNRDEDE
ERREEQYRRLLDNCLEPSWYEKKSEKTAATAVIEAVGGKAIPALTAALTR
LANSSASATSSLLSSTRSAKNKSIGQASSLAVTAVSQAGSPDNNLQEQPR
PSSTPTSPQTMTPLSLHSSPGTGRRRRSRSPSRRSHRQGGNRTGTRSPEK
TRLQATTAVGPGGKTCAVCLRRSSPAAMCPKCGRRAAKALKDREGSRRAR
VILVPYGGHFGVGEADALQREGDAVKRWVRLLDDETGANFYHNVHYGSSV
WKSGIELPKPAPVVKAARRRRKIGDGGGGVAVVGSPKSAASVPGSTTPPA
SGSPAARALPMERAATSPRAIGMAAPGSSIVDRRALLRKTKTAFSVASMA
ALRAAAGGTTKGGDNNNGEDDDNKGKNNGDDDDHEDDVNGTSSPRPIIKP
AIKKPAAASSPASPSSPQRNASASPTAAAAASPGRNRVVVRDAGDSEPEV
VLDAHRRIYPPFRLVSWEDVEAAAAAESAGLKGVSPRPGTGVSGRKSHSR
GTPGDSAGSGRRPRLTTAVTKGGR*
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mRNA from alignment at E-fasciculatus_F_contig12761:17..1891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12761.2102.1 ID=mRNA_E-fasciculatus_F_contig12761.2102.1|Name=mRNA_E-fasciculatus_F_contig12761.2102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1875bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12761:17..1891+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGCCGGTACTGGCTTCGCCGCCGGAGGCCGGCCTTCGAACGTGGGGT
GGACATGCGGTCATCCCTGGGGCTGCCGGACGCCTACTGCGATGTCTTCG
ACCGCATCGAGAGCCGCGGCGCCGCCTGGTTGGTCGCGGCCGGTCATGTA
TTACTTCACGCCTTCGACCCACCACAAAAAGGAGATGCTGCTGCCTCTGA
TTCTTCTTCCTCATCTAAGTTGTGCAACGATGGCCAGGGCGCTGGTGGGC
GGCGCGCGACGAGTGGGGAGGGGTGTGATGGCAACAGGGATGAAGATGAG
GAACGGCGAGAGGAACAGTACCGGCGGCTGCTGGATAACTGTCTGGAGCC
ATCGTGGTACGAGAAGAAGAGCGAAAAAACGGCCGCCACTGCGGTGATCG
AAGCGGTAGGAGGGAAAGCGATACCGGCGTTGACGGCCGCCCTGACTAGA
CTCGCAAACAGCTCGGCGTCTGCGACCTCATCTCTGCTCAGCAGCACAAG
GAGCGCCAAGAACAAAAGCATCGGACAAGCCAGTTCTCTTGCAGTCACAG
CAGTATCACAAGCAGGCAGCCCCGACAACAACCTCCAGGAGCAGCCAAGG
CCGTCGTCCACCCCAACGAGCCCACAGACGATGACGCCGTTGTCACTGCA
TAGTAGCCCCGGGACAGGCCGTAGACGGCGCAGCCGTAGCCCTAGCCGAA
GGTCCCACAGGCAAGGTGGGAACAGAACGGGCACCCGCTCCCCTGAGAAA
ACCCGCCTTCAGGCCACAACGGCCGTCGGGCCCGGCGGCAAGACTTGCGC
GGTGTGCCTCCGACGGTCGTCCCCCGCCGCCATGTGCCCGAAGTGCGGCC
GCCGAGCCGCCAAGGCTCTGAAGGACAGGGAGGGCTCCCGCAGGGCCCGG
GTGATCCTCGTCCCGTACGGCGGCCACTTCGGGGTCGGCGAGGCGGACGC
CCTGCAGAGAGAGGGCGACGCGGTCAAGCGCTGGGTCCGACTGCTGGACG
ACGAGACGGGCGCGAACTTTTACCACAACGTCCACTACGGCTCTTCGGTT
TGGAAGTCCGGGATTGAGCTGCCGAAGCCTGCGCCCGTTGTGAAGGCCGC
CCGGCGGCGGCGAAAGATTGGTGATGGCGGCGGCGGGGTGGCGGTGGTAG
GCTCGCCGAAATCTGCGGCCTCCGTTCCCGGCAGTACCACCCCCCCCGCC
TCCGGGAGCCCCGCGGCTCGAGCCTTGCCGATGGAGAGAGCGGCTACGAG
CCCCCGCGCGATAGGGATGGCGGCACCCGGTAGTAGTATTGTCGATCGGA
GGGCGCTGCTGCGAAAGACCAAGACGGCGTTTTCGGTCGCGTCGATGGCG
GCTCTGAGGGCTGCTGCGGGAGGTACCACCAAGGGCGGCGACAACAACAA
CGGCGAGGACGACGATAACAAGGGCAAGAACAACGGCGACGACGACGACC
ACGAAGATGACGTCAACGGCACCTCTTCTCCTAGACCGATCATCAAGCCG
GCGATAAAAAAACCAGCGGCTGCGTCGTCACCTGCGTCCCCGTCTTCGCC
ACAGAGAAACGCCTCCGCCTCTCCCACGGCCGCCGCCGCCGCTTCGCCCG
GCCGCAACCGAGTGGTAGTGCGTGACGCGGGGGACTCCGAGCCCGAGGTC
GTCCTCGACGCCCACAGAAGGATATACCCGCCATTCAGACTCGTCTCGTG
GGAGGACGTCGAGGCCGCGGCGGCGGCGGAATCGGCAGGGTTGAAGGGCG
TTTCTCCTAGGCCGGGGACGGGGGTTTCGGGGAGGAAGAGTCACTCGCGG
GGGACGCCCGGGGATTCGGCCGGCAGCGGGCGGCGGCCGAGGTTGACGAC
GGCGGTGACCAAGGGCGGCAGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12761:17..1891+

>mRNA_E-fasciculatus_F_contig12761.2102.1 ID=mRNA_E-fasciculatus_F_contig12761.2102.1|Name=mRNA_E-fasciculatus_F_contig12761.2102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12761:17..1891+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGCCGGTACTGGCTTCGCCGCCGGAGGCCGGCCTTCGAACGTGGGGT
GGACATGCGGTCATCCCTGGGGCTGCCGGACGCCTACTGCGATGTCTTCG
ACCGCATCGAGAGCCGCGGCGCCGCCTGGTTGGTCGCGGCCGGTCATGTA
TTACTTCACGCCTTCGACCCACCACAAAAAGGAGATGCTGCTGCCTCTGA
TTCTTCTTCCTCATCTAAGTTGTGCAACGATGGCCAGGGCGCTGGTGGGC
GGCGCGCGACGAGTGGGGAGGGGTGTGATGGCAACAGGGATGAAGATGAG
GAACGGCGAGAGGAACAGTACCGGCGGCTGCTGGATAACTGTCTGGAGCC
ATCGTGGTACGAGAAGAAGAGCGAAAAAACGGCCGCCACTGCGGTGATCG
AAGCGGTAGGAGGGAAAGCGATACCGGCGTTGACGGCCGCCCTGACTAGA
CTCGCAAACAGCTCGGCGTCTGCGACCTCATCTCTGCTCAGCAGCACAAG
GAGCGCCAAGAACAAAAGCATCGGACAAGCCAGTTCTCTTGCAGTCACAG
CAGTATCACAAGCAGGCAGCCCCGACAACAACCTCCAGGAGCAGCCAAGG
CCGTCGTCCACCCCAACGAGCCCACAGACGATGACGCCGTTGTCACTGCA
TAGTAGCCCCGGGACAGGCCGTAGACGGCGCAGCCGTAGCCCTAGCCGAA
GGTCCCACAGGCAAGGTGGGAACAGAACGGGCACCCGCTCCCCTGAGAAA
ACCCGCCTTCAGGCCACAACGGCCGTCGGGCCCGGCGGCAAGACTTGCGC
GGTGTGCCTCCGACGGTCGTCCCCCGCCGCCATGTGCCCGAAGTGCGGCC
GCCGAGCCGCCAAGGCTCTGAAGGACAGGGAGGGCTCCCGCAGGGCCCGG
GTGATCCTCGTCCCGTACGGCGGCCACTTCGGGGTCGGCGAGGCGGACGC
CCTGCAGAGAGAGGGCGACGCGGTCAAGCGCTGGGTCCGACTGCTGGACG
ACGAGACGGGCGCGAACTTTTACCACAACGTCCACTACGGCTCTTCGGTT
TGGAAGTCCGGGATTGAGCTGCCGAAGCCTGCGCCCGTTGTGAAGGCCGC
CCGGCGGCGGCGAAAGATTGGTGATGGCGGCGGCGGGGTGGCGGTGGTAG
GCTCGCCGAAATCTGCGGCCTCCGTTCCCGGCAGTACCACCCCCCCCGCC
TCCGGGAGCCCCGCGGCTCGAGCCTTGCCGATGGAGAGAGCGGCTACGAG
CCCCCGCGCGATAGGGATGGCGGCACCCGGTAGTAGTATTGTCGATCGGA
GGGCGCTGCTGCGAAAGACCAAGACGGCGTTTTCGGTCGCGTCGATGGCG
GCTCTGAGGGCTGCTGCGGGAGGTACCACCAAGGGCGGCGACAACAACAA
CGGCGAGGACGACGATAACAAGGGCAAGAACAACGGCGACGACGACGACC
ACGAAGATGACGTCAACGGCACCTCTTCTCCTAGACCGATCATCAAGCCG
GCGATAAAAAAACCAGCGGCTGCGTCGTCACCTGCGTCCCCGTCTTCGCC
ACAGAGAAACGCCTCCGCCTCTCCCACGGCCGCCGCCGCCGCTTCGCCCG
GCCGCAACCGAGTGGTAGTGCGTGACGCGGGGGACTCCGAGCCCGAGGTC
GTCCTCGACGCCCACAGAAGGATATACCCGCCATTCAGACTCGTCTCGTG
GGAGGACGTCGAGGCCGCGGCGGCGGCGGAATCGGCAGGGTTGAAGGGCG
TTTCTCCTAGGCCGGGGACGGGGGTTTCGGGGAGGAAGAGTCACTCGCGG
GGGACGCCCGGGGATTCGGCCGGCAGCGGGCGGCGGCCGAGGTTGACGAC
GGCGGTGACCAAGGGCGGCAGGTAGGGGAGCCGGTACTGGCTTCGCCGCC
GGAGGCCGGCCTTCGAACGTGGGGTGGACATGCGGTCATCCCTGGGGCTG
CCGGACGCCTACTGCGATGTCTTCGACCGCATCGAGAGCCGCGGCGCCGC
CTGGTTGGTCGCGGCCGGTCATGTATTACTTCACGCCTTCGACCCACCAC
AAAAAGGAGATGCTGCTGCCTCTGATTCTTCTTCCTCATCTAAGTTGTGC
AACGATGGCCAGGGCGCTGGTGGGCGGCGCGCGACGAGTGGGGAGGGGTG
TGATGGCAACAGGGATGAAGATGAGGAACGGCGAGAGGAACAGTACCGGC
GGCTGCTGGATAACTGTCTGGAGCCATCGTGGTACGAGAAGAAGAGCGAA
AAAACGGCCGCCACTGCGGTGATCGAAGCGGTAGGAGGGAAAGCGATACC
GGCGTTGACGGCCGCCCTGACTAGACTCGCAAACAGCTCGGCGTCTGCGA
CCTCATCTCTGCTCAGCAGCACAAGGAGCGCCAAGAACAAAAGCATCGGA
CAAGCCAGTTCTCTTGCAGTCACAGCAGTATCACAAGCAGGCAGCCCCGA
CAACAACCTCCAGGAGCAGCCAAGGCCGTCGTCCACCCCAACGAGCCCAC
AGACGATGACGCCGTTGTCACTGCATAGTAGCCCCGGGACAGGCCGTAGA
CGGCGCAGCCGTAGCCCTAGCCGAAGGTCCCACAGGCAAGGTGGGAACAG
AACGGGCACCCGCTCCCCTGAGAAAACCCGCCTTCAGGCCACAACGGCCG
TCGGGCCCGGCGGCAAGACTTGCGCGGTGTGCCTCCGACGGTCGTCCCCC
GCCGCCATGTGCCCGAAGTGCGGCCGCCGAGCCGCCAAGGCTCTGAAGGA
CAGGGAGGGCTCCCGCAGGGCCCGGGTGATCCTCGTCCCGTACGGCGGCC
ACTTCGGGGTCGGCGAGGCGGACGCCCTGCAGAGAGAGGGCGACGCGGTC
AAGCGCTGGGTCCGACTGCTGGACGACGAGACGGGCGCGAACTTTTACCA
CAACGTCCACTACGGCTCTTCGGTTTGGAAGTCCGGGATTGAGCTGCCGA
AGCCTGCGCCCGTTGTGAAGGCCGCCCGGCGGCGGCGAAAGATTGGTGAT
GGCGGCGGCGGGGTGGCGGTGGTAGGCTCGCCGAAATCTGCGGCCTCCGT
TCCCGGCAGTACCACCCCCCCCGCCTCCGGGAGCCCCGCGGCTCGAGCCT
TGCCGATGGAGAGAGCGGCTACGAGCCCCCGCGCGATAGGGATGGCGGCA
CCCGGTAGTAGTATTGTCGATCGGAGGGCGCTGCTGCGAAAGACCAAGAC
GGCGTTTTCGGTCGCGTCGATGGCGGCTCTGAGGGCTGCTGCGGGAGGTA
CCACCAAGGGCGGCGACAACAACAACGGCGAGGACGACGATAACAAGGGC
AAGAACAACGGCGACGACGACGACCACGAAGATGACGTCAACGGCACCTC
TTCTCCTAGACCGATCATCAAGCCGGCGATAAAAAAACCAGCGGCTGCGT
CGTCACCTGCGTCCCCGTCTTCGCCACAGAGAAACGCCTCCGCCTCTCCC
ACGGCCGCCGCCGCCGCTTCGCCCGGCCGCAACCGAGTGGTAGTGCGTGA
CGCGGGGGACTCCGAGCCCGAGGTCGTCCTCGACGCCCACAGAAGGATAT
ACCCGCCATTCAGACTCGTCTCGTGGGAGGACGTCGAGGCCGCGGCGGCG
GCGGAATCGGCAGGGTTGAAGGGCGTTTCTCCTAGGCCGGGGACGGGGGT
TTCGGGGAGGAAGAGTCACTCGCGGGGGACGCCCGGGGATTCGGCCGGCA
GCGGGCGGCGGCCGAGGTTGACGACGGCGGTGACCAAGGGCGGCAGGTAG
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