mRNA_E-fasciculatus_F_contig1276.2100.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI) HSP 1 Score: 197 bits (501), Expect = 3.970e-61 Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1
Query: 412 MAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGLGEQLVER 723
MAACVVLFERGEVPVVEKILKAQ AGAVGV+VVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMM L+KIVVEGLGEQLV+R
Sbjct: 1 MAACVVLFERGEVPVVEKILKAQTAGAVGVIVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMLLQKIVVEGLGEQLVQR 104
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A835Z4S0_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S0_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.090e-46 Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = 1
Query: 220 RADAVFPLLHLHFCLDCPDAAAEGSVVRALAPHHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGLGEQLV 717
+A PL ++ FCLDCPD EGS V AL HG R F +G D++YAVPN G+ + LLN D++A + L +RG +P++EK+LK QAAGAVG ++VDNG C + + CGR GG +GGFA RD + WS VKIPA++VS +G R + +M L I + G G+QLV
Sbjct: 34 QASGDSPLQYVEFCLDCPDPHLEGSHVPALRAAHGQRAFNATG-DIIYAVPNDGSAE-LLNPDEVAGHIALLDRGTIPLIEKVLKVQAAGAVGALLVDNGECSEDFMRCGRTGGVPEGGFAWRDQPYDWSKVKIPALLVSEKEGSRVKALMSLRSIFITGHGDQLV 197
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A8J2SH82_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH82_9STRA) HSP 1 Score: 132 bits (331), Expect = 8.420e-34 Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 226 DAVFPLLHLHFCLDCPDAAAEGSVVRALAPHHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGLGEQLV 717
DA L + FC C D EGS+ R L G RD+K++ + LVYA+PN + + N D++ V L R P+V+KIL AQ AGAVGVV+VD+G C+ L +CGR+G AR GGFA RD +W VKIP+V+VS G+R R +M LE V LG Q V
Sbjct: 42 DAHESLARIEFCAYCEDPHTEGSLARGLTALQGARDYKITSK-LVYALPNDASTKPM-NADELTGNVALVHRSATPLVQKILHAQEAGAVGVVLVDDGRCESDL-NCGRIGSARLGGFAPRDDPSSWRLVKIPSVLVSQETGKRIRRLMPLEHFEVPKLGTQWV 202
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH) HSP 1 Score: 120 bits (301), Expect = 1.280e-29 Identity = 61/161 (37.89%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 226 DAVFPLLHLHFCLDCPDAAAEGSVVRALAPHHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCG-RLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGLG 705
DA L + +CL CPD +EGS++ +L +G+ ++ V+GE LVY VPN L N ++ + +RGE+ +++K+LK Q A A+GVV+ D+G C + CG R G ++GGFA D +W V+IP VMV++ + +R R M ++ + + GLG
Sbjct: 34 DADGALKWITYCLKCPDPRSEGSILPSLNAKYGVDEYSVTGE-LVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRLRDAMGIKSVYIPGLG 193
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.810e-23 Identity = 59/151 (39.07%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 250 LHFCLDCPDAAAEGSVVRALAPHHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGL 702
L FC C D A+ GS V + D+ V GE + YAVPNT N D L N + +VL +RG+VP++EK+ + Q AG + VV+VD+G C DG +CG LG F ++D W+ + IP V++ DG R + M L ++ V L
Sbjct: 46 LTFCKKCHDVASLGSFVHTWDSRYNPSDYHVQGE-IAYAVPNTANDD-LFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDGECSDGF-ECGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRIKARMSLVRMDVPDL 193
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A5A8DWN8_CAFRO (PA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWN8_CAFRO) HSP 1 Score: 95.5 bits (236), Expect = 6.780e-20 Identity = 59/157 (37.58%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 250 LHFCLDCPDAAAEGSVVRALAPHHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARDG-GFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGLGEQLV 717
L FC DC D +GS A HG F + E LVY+VPN ++ ++ + + VL ERG P++ K++ AQ AGAV V+V+D G +CGRLG + G GFA D W V IP +V+ +R M ++ +EG+G QLV
Sbjct: 86 LTFCRDC-DPREQGSFATIWAAAHGPPSFDIEAE-LVYSVPNDASEPLV---NPVRGAAVLVERGGAPIITKVIHAQEAGAVAVIVIDTPGDCSEAFECGRLGSSSGGTGFAAADPASRWQHVIIPVALVTRGTAQRLVLQMDATEMHIEGMGSQLV 237
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.390e-17 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 241 LLHLHFCLDCPDAAAEGSVVRALAPHHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDG 534
L L FC CPD EG+ V L G +++ V+G D+ YAVPN + LLN +++ + +RG++P+VEKIL AQ AGAVGVV+ D+G C +G
Sbjct: 55 LRSLEFCRSCPDPHLEGTQVLGLGAAQGPKEYHVTG-DMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDGNCAEG 151
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.040e-9 Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 424 VVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDC--GRLGGARDG-GFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRLEKIVVEGLGEQL 714
V+L ERG P+V+K+L AQ AGA+GV++VD+G C+ C G +G GFA +D W V+IPAV+V A DGE R + E EG G++L
Sbjct: 775 VLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRCEKFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVLRSRVVKETPPAEGAGDEL 874
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: A0A482RLA8_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RLA8_9ARCH) HSP 1 Score: 64.3 bits (155), Expect = 5.370e-9 Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 334 FKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARD--GGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMRL 678
F V E +VYAVPN ++ + + + +VL +RG + K + AQ AGA+ +++VD+G C D G LG D GF + AW V+IP +++A DG R +RL
Sbjct: 43 FHVHAE-IVYAVPNDASRPLY---NVVGGTIVLAKRGGASIPTKAVHAQRAGALALLIVDDGSCGDAFECGGWLGSKADHPDGFIVAHELSAWQQVRIPVALIAARDGARLDAALRL 155
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 6.180e-9 Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 316 HHGIRDFKVSGEDLVYAVPNTGNKDMLLNGDDMAACVVLFERGEVPVVEKILKAQAAGAVGVVVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGER 657
H R FKV E +V A P + L NG + +V+ +RG++P+V K+L AQ AGA+GV+V D+G C G G+A D W V++P V++ D ER
Sbjct: 74 HFSPRSFKVKSE-VVVAQPADARSE-LENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAER 185 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1276.2100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1276.2100.1 >prot_E-fasciculatus_F_contig1276.2100.1 ID=prot_E-fasciculatus_F_contig1276.2100.1|Name=mRNA_E-fasciculatus_F_contig1276.2100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=242bp MAASNRHHRKLSIATGVYCCCAILAATFSAPGHVVAVTPASSSGSSEGSRback to top mRNA from alignment at E-fasciculatus_F_contig1276:6955..8762- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1276.2100.1 ID=mRNA_E-fasciculatus_F_contig1276.2100.1|Name=mRNA_E-fasciculatus_F_contig1276.2100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1808bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1276:6955..8762- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1276:6955..8762- >mRNA_E-fasciculatus_F_contig1276.2100.1 ID=mRNA_E-fasciculatus_F_contig1276.2100.1|Name=mRNA_E-fasciculatus_F_contig1276.2100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1276:6955..8762- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |