mRNA_E-fasciculatus_F_contig12757.2098.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12757.2098.1
Unique NamemRNA_E-fasciculatus_F_contig12757.2098.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12757.2098.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 473 bits (1216), Expect = 7.070e-144
Identity = 490/649 (75.50%), Postives = 496/649 (76.43%), Query Frame = 1 
Query:  151 LDASSSSPGGRQVGELEGVAA----AGDLAELERAVVAASKITPPPADGAGAGAG-----DPTARMMGTGPASRSRRNSGANSIGGSWEQQEVAEAGPPGGILPAPPKTPSASSSAGSGMSVSSTGA---TQAVEALAHGSPAAAMTSPERRRRTGDGGAPAIHASPISRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GRRELQPPQSINMTEGDEGPPSRPRKNSGGGG-PQFRGDGGGGRPSGERRERGSRXXXXXXXXXXXXXXXNGLPRGRAAGRNGRRGRRSVSMPQSGYRGPGAFGLAPVVEGDAEEXXXXXXXXXXXEDDQDMVFKVVNKDAEEAVSDSRNPAEEEDVPFDVTPQNYRAGEAWHPERQKNAALASTSPLDLAGTELGRRGDSRETKKPHKSGXXXXXXREGGGVHFSLKKKFHIRGPRGMKGRDHKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAVGWPKGAKGGEGAAASGGSDPTAFVATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------AVPKSSPGSGEKGLTRQQMAAAKVAKRSQALRQGRGLMENSFL 2034
            LDASS SP G+ V ELE V A    AG+LA LERAVVAASKIT                 D TARMMGTGPASRSRRNSG NSIGGSWEQQEVAE G                                 TQAVE L+HGSP AAMTSPERRRRT D  APA+HASPISRA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GRRELQPP SINMTEGDEGPPSRPRKNSGGGG PQFRGDG   RPSGERRERG  XXXXXXXXXXXXXXXNGLPRGRA GRNGRRGRRSVSMPQSG+RGPGAFGLAPVVEGDAEEXXXXXXXXXXXEDDQDMVFKVVNKDAEE VSDSRNPAEE+DVPFDVTPQNYRAGEAWHPERQ NAALASTSPLDLAGT L RRGDSR  KKPHK G      REGGGVHFSLK KFHIRG R MKGRDHKE    XXXXXXXX                           A AAVGW KGAKGGEGA               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       A PK SPGSGEKGLTRQQMAAA VAKRSQALRQGRGLMENSFL
Sbjct:  251 LDASSPSPAGK-VTELEDVVAGHQAAGELAALERAVVAASKITXXXXXXXXXXXXXXXXXDFTARMMGTGPASRSRRNSGGNSIGGSWEQQEVAETGQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQAVEVLSHGSPTAAMTSPERRRRTRDF-APAMHASPISRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRELQPPHSINMTEGDEGPPSRPRKNSGGGGGPQFRGDGXXXRPSGERRERGXXXXXXXXXXXXXXXXXNGLPRGRAVGRNGRRGRRSVSMPQSGHRGPGAFGLAPVVEGDAEEXXXXXXXXXXXEDDQDMVFKVVNKDAEEPVSDSRNPAEEKDVPFDVTPQNYRAGEAWHPERQ-NAALASTSPLDLAGTGLDRRGDSRVNKKPHKFGGGNSSGREGGGVHFSLK-KFHIRGHRVMKGRDHKEDDGAXXXXXXXXSVTGFSGQAARGQDAGAAEATV-----AAAAVGWSKGAKGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAGPKVSPGSGEKGLTRQQMAAAMVAKRSQALRQGRGLMENSFL 890
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12757.2098.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 5.250e-115
Identity = 310/394 (78.68%), Postives = 314/394 (79.70%), Query Frame = 1 
Query:  184 QVGELEGVAA----AGDLAELERAVVAASKITPPPADGAGAGAGDPTARMMGTGPASRSRRNSGANSIGGSWEQQEVAE---AGPPGGILPAPPKTPSASSSAGSGMSVSSTGATQAVEALAHGSPAAAMTSPERRRRTGDGGAPAIHASPISRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRELQPPQSINMTEGDEGPPSRPRKNSGGGGPQFRGDGGGGRPSGERRERGSRXXXXXXXXXXXXXXXNGLPRGRAAGRNGRRGRRSVSMPQSGYRGPGAFGLAPVVEGDAEEXXXXXXXXXXXE---DDQDMVFKVVNKDAEEAVSDSRNPAEEEDVPFDVTPQNYRAGEAWHPERQKNAALASTSPLDL 1335
            +V ELE VAA    AG+LA LERAVVAASKITP           D TARMMGTGPASRSRRNSG NSIGGSWEQQEVAE   AGPPGGILPAP                         EAL+HGSPAAAMTSPERRRRTGD  APAIHASPISRA XXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXX GRRELQPP SINMTEGDEGPPSRPRKNSGGGGPQFRGDGGGGRPSGERRERGSRXXXXXXXXXXXXXXXNGLPRGRAAGRNGRRGRRSVSMPQSGYRGPGAFG APVVEGDAEEXXXXXXXXXXX    DDQDMVFKVVNKDAEE VSDSRNPA+EEDVPFDVTPQ YRAGEAWHPERQ         PL L
Sbjct:  263 EVAELEAVAAGHQTAGELAALERAVVAASKITPXXXXXXXXXXXDFTARMMGTGPASRSRRNSGGNSIGGSWEQQEVAEVGQAGPPGGILPAPXXXXXXXXXXXXXXXXXXXXXXXXXEALSHGSPAAAMTSPERRRRTGDL-APAIHASPISRAAXXXXXXXXXXXXXXXXXXVSDQPRSSRAXXXXXXXXXXXXXXXXX-GRRELQPPHSINMTEGDEGPPSRPRKNSGGGGPQFRGDGGGGRPSGERRERGSRXXXXXXXXXXXXXXXNGLPRGRAAGRNGRRGRRSVSMPQSGYRGPGAFGHAPVVEGDAEEXXXXXXXXXXXXXXXDDQDMVFKVVNKDAEEPVSDSRNPADEEDVPFDVTPQTYRAGEAWHPERQSGDDGEEEDPLYL 654
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12757.2098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWS7_9PHAE7.070e-14475.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN8_ECTSI5.250e-11578.68WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12757contigE-fasciculatus_F_contig12757:2..3819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.8
Seed ortholog evalue2.6e-105
Seed eggNOG ortholog2880.D8LMN8
Preferred nameWDR44
KEGG koko:K20241
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-02_002470.1
Exons3
Model size2036
Cds size2034
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12757.2098.1prot_E-fasciculatus_F_contig12757.2098.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12757 2..3817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.650732-CDS-E-fasciculatus_F_contig12757:1..11471622927782.650732-CDS-E-fasciculatus_F_contig12757:1..1147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12757 2..1147 +
1695995691.931891-CDS-E-fasciculatus_F_contig12757:1..11471695995691.931891-CDS-E-fasciculatus_F_contig12757:1..1147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12757 2..1147 +
1622927782.6644433-CDS-E-fasciculatus_F_contig12757:2700..28501622927782.6644433-CDS-E-fasciculatus_F_contig12757:2700..2850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12757 2701..2850 +
1695995691.9452972-CDS-E-fasciculatus_F_contig12757:2700..28501695995691.9452972-CDS-E-fasciculatus_F_contig12757:2700..2850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12757 2701..2850 +
1622927782.6799986-CDS-E-fasciculatus_F_contig12757:3079..38171622927782.6799986-CDS-E-fasciculatus_F_contig12757:3079..3817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12757 3080..3817 +
1695995691.9559407-CDS-E-fasciculatus_F_contig12757:3079..38171695995691.9559407-CDS-E-fasciculatus_F_contig12757:3079..3817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12757 3080..3817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12757.2098.1

>prot_E-fasciculatus_F_contig12757.2098.1 ID=prot_E-fasciculatus_F_contig12757.2098.1|Name=mRNA_E-fasciculatus_F_contig12757.2098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=678bp
SSSGGGGGGGGRSTSPTTATTTTQKSISRTGSNHRLRLSIEGDSRGGGGG
LDASSSSPGGRQVGELEGVAAAGDLAELERAVVAASKITPPPADGAGAGA
GDPTARMMGTGPASRSRRNSGANSIGGSWEQQEVAEAGPPGGILPAPPKT
PSASSSAGSGMSVSSTGATQAVEALAHGSPAAAMTSPERRRRTGDGGAPA
IHASPISRAAAAAARGGSGSSGGGGGSSGIVSDQPRSSRAIPAAVISTSS
GGSSRRGRRELQPPQSINMTEGDEGPPSRPRKNSGGGGPQFRGDGGGGRP
SGERRERGSRGAGGGRPRRSGRGGKNGLPRGRAAGRNGRRGRRSVSMPQS
GYRGPGAFGLAPVVEGDAEEEEEEEEEGDETEDDQDMVFKVVNKDAEEAV
SDSRNPAEEEDVPFDVTPQNYRAGEAWHPERQKNAALASTSPLDLAGTEL
GRRGDSRETKKPHKSGGGGGNSREGGGVHFSLKKKFHIRGPRGMKGRDHK
EDDGGGGGGSGGGGGGGGVTGFSGQAGRAQDAGAAEASVAAGAAVGWPKG
AKGGEGAAASGGSDPTAFVATAAAAPPVRRNSDSSHPEYGAAATAGKAVA
ARGSSPPSAPRRASTGEDSRDSSNRGGSPPPPAPPAVPKSSPGSGEKGLT
RQQMAAAKVAKRSQALRQGRGLMENSFL
back to top

mRNA from alignment at E-fasciculatus_F_contig12757:2..3819+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12757.2098.1 ID=mRNA_E-fasciculatus_F_contig12757.2098.1|Name=mRNA_E-fasciculatus_F_contig12757.2098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3818bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12757:2..3819+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGCAGCGGCGGCGGTGGCGGCGGCGGAGGGCGCTCCACGTCCCCCAC
AACTGCTACTACCACTACTCAGAAGAGCATATCCCGCACGGGCAGCAACC
ACAGGCTTCGCCTTAGCATCGAAGGAGACAGCAGAGGCGGCGGCGGCGGC
CTGGACGCGTCGTCGTCGTCGCCGGGAGGACGACAAGTCGGCGAGTTAGA
GGGCGTGGCGGCGGCGGGTGACCTGGCGGAGCTCGAGAGAGCTGTGGTAG
CGGCCTCCAAGATCACCCCGCCCCCGGCCGACGGCGCCGGCGCCGGCGCC
GGCGACCCCACCGCCCGCATGATGGGGACCGGACCCGCATCCCGGTCGAG
ACGGAACAGCGGCGCCAACAGCATCGGGGGCAGCTGGGAGCAGCAGGAAG
TGGCGGAGGCGGGACCCCCCGGCGGCATCCTCCCGGCGCCGCCCAAGACC
CCGTCCGCGTCCTCGTCCGCCGGGTCGGGCATGTCGGTGTCCTCCACTGG
CGCGACCCAGGCGGTCGAAGCTCTCGCCCACGGGAGCCCGGCGGCGGCGA
TGACCTCGCCCGAGCGGCGGCGGCGCACCGGAGACGGGGGGGCGCCGGCC
ATCCATGCCAGCCCGATTAGCAGGGCGGCTGCGGCCGCTGCCCGCGGGGG
GAGCGGCAGCAGCGGCGGCGGCGGCGGCAGCAGCGGCATCGTTTCGGACC
AGCCTCGCTCGTCCCGCGCGATACCCGCCGCGGTGATTTCCACGTCGTCG
GGGGGCAGCAGCAGGAGAGGGCGCAGGGAGCTACAGCCGCCGCAGTCGAT
AAACATGACGGAGGGCGACGAGGGACCGCCGTCCCGGCCGAGAAAAAACA
GCGGCGGCGGCGGGCCGCAGTTCCGAGGGGACGGGGGAGGGGGCAGGCCT
AGCGGCGAGCGTAGAGAGCGCGGGAGCAGAGGGGCCGGCGGCGGGCGCCC
CCGACGGAGCGGGCGGGGGGGCAAGAACGGCCTGCCGAGGGGCCGGGCGG
CGGGCAGGAACGGCAGGCGCGGGCGGCGGTCGGTGAGCATGCCGCAGAGC
GGCTACCGCGGCCCCGGGGCGTTCGGCCTCGCCCCCGTGGTAGAGGGGGA
CGCCGAGGAGGAAGAGGAGGAGGAGGAAGAGGGGGACGAGACGGAGGTGA
GTCAAAGCGAAGAGCGTGTTGTGGTTTTTGGTGTTGTTGTGCCCTCATGG
GTACAGTATGCCGTGTTGTGCTGCTGCAACTTGTCCGCCCTCGCTGGGTG
CTCGATGTGGCGAAACAACGGTTGATGAGCAGCCGGTCCGCCGGCGTTTG
GTACCCACCACCACCACCACCACCACCGGAGTAGAGAGTAGGGGGGTACA
CATCGATGGGGCAACCCCTGACGATGCGCGCCAGCTGCAGTTCAAGACTA
GAGAGCATGAGTGTTTCCGTGGTCGCCGGCTAGCGATGATTTGACAACAG
GCACCAACCCAGCCTCTTACGAGTCTTGGGAGACGGGTAGTGATCTCACG
CGGTGTTTCCTTTTTTCCTTTTGTCGAAAACAGACCTCGTTCATCTCTGT
ATTCGCAGATACAGTGATTCATAGTGCCCTCCAGCTTACCATTGTTTCCG
TGCCCGGCGAGCCCCTCGAAGGTGTATTTTGTCCTGTCCCACCTGCGTGT
GTAGTTGTTCTTCACTCTTCACAGCGTCGCCTATGCGCATCGTATTTTTG
TCGACGTACTTCGTGGAGACGTGCAAGCGACTGGTTGTCGCACTCCATCA
ATGTATGTCAAGCTGTTGAGGCAAGCTTGCTTTGTAAAATCAAAGTATAG
TAGTAGCACTTGCACCGCTGCGTTCCCATCTCGCGAACGAAATATAACAT
GTGCTTTCGGGATCCAATCTCACCATCATAGAAGATATGGAGTGATTGAT
GCCAGTGGGTCGACGAGTCGACCTACTTACCTGTCCACTTCCTCGGTTGT
TTTATTATTTTTTCTTTCATGTCTTGCGTAGTTTTTCGAGGAAGAACGGG
GTGAACAAGCACGCCGCGTTAAGCGATGTTTTTTTTTCTGGTGAAACTGC
TGCTGTACAGCCAAACAACGAACCATTTTTGTCCAAGAGCGAGCAAACTC
CCGGCATCAAGCTGCCAGGCGGTGACACCGTTTAATCCCTCCTTGCGTTG
TTTCTTCTGAAGTACTTTTTTGTTGTCCTGGTCGCCTGTTCATCGACAAG
TGGTCAAGGATGAAATGACAGATTTTTGTTACGAAGACTATTTAATACAT
ACGTTATGAGGGCACCATTTCAAGCATGGAAAGCCCTCTCAGGCTGTGGA
TCTGGCTGCAATGCAAGCTCTCAAGCCAGGAGTGGGGTCATCGCCCGGGG
AGAGACGGGGCTGTCATCGTTTTCTTTCGTGACTTCGCTGCTTGCTTCCG
TGTGTTGTGCCGTGACTCTGTGTGTGTGTTTTTGCGTCGTTCCTCCTTAC
ACGCGAAAGGGCGGGATGGCTGCAGGAAGACCCGCTCCTCTCGAACCCGC
GATGCTCATCTTTAGTGATTTTTTTCATCGATCCACAAGCCTTCCGGCCC
ACGCCTCTCTACGTAGTGCCGTCCTGCTCACCTTTCCGTCGGTGTGTGCT
ACTCTGTCGTGTGTGCTTCGACCGCCTGGTCTGCCCGTCTTTTCTCAACA
ACGGGATGGCAACGCCTGTACGCCTGGGGGGGGGGCGGGGGGGTTGCAGG
ATGACCAAGACATGGTGTTCAAGGTGGTGAACAAGGATGCGGAAGAAGCG
GTGAGCGATTCACGGAACCCCGCTGAGGAGGAAGACGTCCCGTTCGACGT
GACGCCCCAGAACTACCGCGCGGGAGAGGCGTGGCACCCTGAGCGCCAGG
TGTGTTTTCTTGTAGGTTGTCGTGTACGGTGGTTACCACACACACCTCCC
CCCCCACCCCGTTCACGCTGCACTGCTTGCACATCATCGACTTGGGCCCA
GCTTTTGGGTGTGTCCGAGCCAGCAGCCCTCTCTTATTCGCCGCCCCCAC
CCAACGTGACCTTCTACCCCTCCCTGTGCGTGTATGCGCGCGCGTGCGTG
TTTGTGTGTGTTTTGTCCATCCCTCCAGAAGAATGCCGCCCTGGCATCCA
CCTCACCGCTCGACCTAGCCGGCACCGAGCTGGGCCGACGCGGGGACTCC
CGCGAGACCAAGAAGCCCCACAAGTCCGGCGGCGGCGGCGGCAACAGCAG
AGAAGGAGGGGGCGTTCACTTTTCCTTGAAGAAGAAGTTCCACATTCGGG
GGCCCCGGGGCATGAAGGGGAGGGACCACAAGGAAGACGACGGGGGCGGC
GGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGGGGCGTGACCGGGTTTTC
TGGGCAGGCCGGAAGGGCGCAGGATGCGGGCGCCGCGGAAGCATCCGTGG
CGGCGGGGGCCGCCGTTGGTTGGCCGAAGGGGGCCAAGGGCGGCGAGGGA
GCGGCAGCTTCGGGGGGGAGCGACCCCACTGCGTTTGTGGCTACGGCAGC
TGCCGCTCCCCCGGTGAGAAGAAACAGCGACTCGTCGCATCCCGAGTACG
GCGCAGCGGCGACGGCGGGCAAGGCGGTGGCGGCGAGAGGCAGCAGCCCT
CCCTCCGCTCCCCGCCGCGCCAGCACCGGAGAAGACTCGAGAGATAGCAG
CAACAGGGGAGGGTCCCCGCCGCCCCCGGCGCCGCCTGCGGTCCCAAAGA
GCTCCCCCGGTAGCGGGGAGAAGGGGCTCACCCGGCAGCAGATGGCCGCG
GCGAAGGTGGCGAAGCGGAGCCAGGCCCTCCGGCAGGGTCGAGGCCTCAT
GGAGAACTCCTTCCTCAT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12757:2..3819+

>mRNA_E-fasciculatus_F_contig12757.2098.1 ID=mRNA_E-fasciculatus_F_contig12757.2098.1|Name=mRNA_E-fasciculatus_F_contig12757.2098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4068bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12757:2..3819+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGCAGCGGCGGCGGTGGCGGCGGCGGAGGGCGCTCCACGTCCCCCAC
AACTGCTACTACCACTACTCAGAAGAGCATATCCCGCACGGGCAGCAACC
ACAGGCTTCGCCTTAGCATCGAAGGAGACAGCAGAGGCGGCGGCGGCGGC
CTGGACGCGTCGTCGTCGTCGCCGGGAGGACGACAAGTCGGCGAGTTAGA
GGGCGTGGCGGCGGCGGGTGACCTGGCGGAGCTCGAGAGAGCTGTGGTAG
CGGCCTCCAAGATCACCCCGCCCCCGGCCGACGGCGCCGGCGCCGGCGCC
GGCGACCCCACCGCCCGCATGATGGGGACCGGACCCGCATCCCGGTCGAG
ACGGAACAGCGGCGCCAACAGCATCGGGGGCAGCTGGGAGCAGCAGGAAG
TGGCGGAGGCGGGACCCCCCGGCGGCATCCTCCCGGCGCCGCCCAAGACC
CCGTCCGCGTCCTCGTCCGCCGGGTCGGGCATGTCGGTGTCCTCCACTGG
CGCGACCCAGGCGGTCGAAGCTCTCGCCCACGGGAGCCCGGCGGCGGCGA
TGACCTCGCCCGAGCGGCGGCGGCGCACCGGAGACGGGGGGGCGCCGGCC
ATCCATGCCAGCCCGATTAGCAGGGCGGCTGCGGCCGCTGCCCGCGGGGG
GAGCGGCAGCAGCGGCGGCGGCGGCGGCAGCAGCGGCATCGTTTCGGACC
AGCCTCGCTCGTCCCGCGCGATACCCGCCGCGGTGATTTCCACGTCGTCG
GGGGGCAGCAGCAGGAGAGGGCGCAGGGAGCTACAGCCGCCGCAGTCGAT
AAACATGACGGAGGGCGACGAGGGACCGCCGTCCCGGCCGAGAAAAAACA
GCGGCGGCGGCGGGCCGCAGTTCCGAGGGGACGGGGGAGGGGGCAGGCCT
AGCGGCGAGCGTAGAGAGCGCGGGAGCAGAGGGGCCGGCGGCGGGCGCCC
CCGACGGAGCGGGCGGGGGGGCAAGAACGGCCTGCCGAGGGGCCGGGCGG
CGGGCAGGAACGGCAGGCGCGGGCGGCGGTCGGTGAGCATGCCGCAGAGC
GGCTACCGCGGCCCCGGGGCGTTCGGCCTCGCCCCCGTGGTAGAGGGGGA
CGCCGAGGAGGAAGAGGAGGAGGAGGAAGAGGGGGACGAGACGGAGAGCA
GCAGCGGCGGCGGTGGCGGCGGCGGAGGGCGCTCCACGTCCCCCACAACT
GCTACTACCACTACTCAGAAGAGCATATCCCGCACGGGCAGCAACCACAG
GCTTCGCCTTAGCATCGAAGGAGACAGCAGAGGCGGCGGCGGCGGCCTGG
ACGCGTCGTCGTCGTCGCCGGGAGGACGACAAGTCGGCGAGTTAGAGGGC
GTGGCGGCGGCGGGTGACCTGGCGGAGCTCGAGAGAGCTGTGGTAGCGGC
CTCCAAGATCACCCCGCCCCCGGCCGACGGCGCCGGCGCCGGCGCCGGCG
ACCCCACCGCCCGCATGATGGGGACCGGACCCGCATCCCGGTCGAGACGG
AACAGCGGCGCCAACAGCATCGGGGGCAGCTGGGAGCAGCAGGAAGTGGC
GGAGGCGGGACCCCCCGGCGGCATCCTCCCGGCGCCGCCCAAGACCCCGT
CCGCGTCCTCGTCCGCCGGGTCGGGCATGTCGGTGTCCTCCACTGGCGCG
ACCCAGGCGGTCGAAGCTCTCGCCCACGGGAGCCCGGCGGCGGCGATGAC
CTCGCCCGAGCGGCGGCGGCGCACCGGAGACGGGGGGGCGCCGGCCATCC
ATGCCAGCCCGATTAGCAGGGCGGCTGCGGCCGCTGCCCGCGGGGGGAGC
GGCAGCAGCGGCGGCGGCGGCGGCAGCAGCGGCATCGTTTCGGACCAGCC
TCGCTCGTCCCGCGCGATACCCGCCGCGGTGATTTCCACGTCGTCGGGGG
GCAGCAGCAGGAGAGGGCGCAGGGAGCTACAGCCGCCGCAGTCGATAAAC
ATGACGGAGGGCGACGAGGGACCGCCGTCCCGGCCGAGAAAAAACAGCGG
CGGCGGCGGGCCGCAGTTCCGAGGGGACGGGGGAGGGGGCAGGCCTAGCG
GCGAGCGTAGAGAGCGCGGGAGCAGAGGGGCCGGCGGCGGGCGCCCCCGA
CGGAGCGGGCGGGGGGGCAAGAACGGCCTGCCGAGGGGCCGGGCGGCGGG
CAGGAACGGCAGGCGCGGGCGGCGGTCGGTGAGCATGCCGCAGAGCGGCT
ACCGCGGCCCCGGGGCGTTCGGCCTCGCCCCCGTGGTAGAGGGGGACGCC
GAGGAGGAAGAGGAGGAGGAGGAAGAGGGGGACGAGACGGAGGATGACCA
AGACATGGTGTTCAAGGTGGTGAACAAGGATGCGGAAGAAGCGGTGAGCG
ATTCACGGAACCCCGCTGAGGAGGAAGACGTCCCGTTCGACGTGACGCCC
CAGAACTACCGCGCGGGAGAGGCGTGGCACCCTGAGCGCCAGGATGACCA
AGACATGGTGTTCAAGGTGGTGAACAAGGATGCGGAAGAAGCGGTGAGCG
ATTCACGGAACCCCGCTGAGGAGGAAGACGTCCCGTTCGACGTGACGCCC
CAGAACTACCGCGCGGGAGAGGCGTGGCACCCTGAGCGCCAGAAGAATGC
CGCCCTGGCATCCACCTCACCGCTCGACCTAGCCGGCACCGAGCTGGGCC
GACGCGGGGACTCCCGCGAGACCAAGAAGCCCCACAAGTCCGGCGGCGGC
GGCGGCAACAGCAGAGAAGGAGGGGGCGTTCACTTTTCCTTGAAGAAGAA
GTTCCACATTCGGGGGCCCCGGGGCATGAAGGGGAGGGACCACAAGGAAG
ACGACGGGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGGGGC
GTGACCGGGTTTTCTGGGCAGGCCGGAAGGGCGCAGGATGCGGGCGCCGC
GGAAGCATCCGTGGCGGCGGGGGCCGCCGTTGGTTGGCCGAAGGGGGCCA
AGGGCGGCGAGGGAGCGGCAGCTTCGGGGGGGAGCGACCCCACTGCGTTT
GTGGCTACGGCAGCTGCCGCTCCCCCGGTGAGAAGAAACAGCGACTCGTC
GCATCCCGAGTACGGCGCAGCGGCGACGGCGGGCAAGGCGGTGGCGGCGA
GAGGCAGCAGCCCTCCCTCCGCTCCCCGCCGCGCCAGCACCGGAGAAGAC
TCGAGAGATAGCAGCAACAGGGGAGGGTCCCCGCCGCCCCCGGCGCCGCC
TGCGGTCCCAAAGAGCTCCCCCGGTAGCGGGGAGAAGGGGCTCACCCGGC
AGCAGATGGCCGCGGCGAAGGTGGCGAAGCGGAGCCAGGCCCTCCGGCAG
GGTCGAGGCCTCATGGAGAACTCCTTCCTCAAGAATGCCGCCCTGGCATC
CACCTCACCGCTCGACCTAGCCGGCACCGAGCTGGGCCGACGCGGGGACT
CCCGCGAGACCAAGAAGCCCCACAAGTCCGGCGGCGGCGGCGGCAACAGC
AGAGAAGGAGGGGGCGTTCACTTTTCCTTGAAGAAGAAGTTCCACATTCG
GGGGCCCCGGGGCATGAAGGGGAGGGACCACAAGGAAGACGACGGGGGCG
GCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGGGGCGTGACCGGGTTT
TCTGGGCAGGCCGGAAGGGCGCAGGATGCGGGCGCCGCGGAAGCATCCGT
GGCGGCGGGGGCCGCCGTTGGTTGGCCGAAGGGGGCCAAGGGCGGCGAGG
GAGCGGCAGCTTCGGGGGGGAGCGACCCCACTGCGTTTGTGGCTACGGCA
GCTGCCGCTCCCCCGGTGAGAAGAAACAGCGACTCGTCGCATCCCGAGTA
CGGCGCAGCGGCGACGGCGGGCAAGGCGGTGGCGGCGAGAGGCAGCAGCC
CTCCCTCCGCTCCCCGCCGCGCCAGCACCGGAGAAGACTCGAGAGATAGC
AGCAACAGGGGAGGGTCCCCGCCGCCCCCGGCGCCGCCTGCGGTCCCAAA
GAGCTCCCCCGGTAGCGGGGAGAAGGGGCTCACCCGGCAGCAGATGGCCG
CGGCGAAGGTGGCGAAGCGGAGCCAGGCCCTCCGGCAGGGTCGAGGCCTC
ATGGAGAACTCCTTCCTC
back to top