mRNA_E-fasciculatus_F_contig12756.2097.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12756.2097.1
Unique NamemRNA_E-fasciculatus_F_contig12756.2097.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12756.2097.1 vs. uniprot
Match: A0A6H5JI99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI99_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.530e-90
Identity = 141/153 (92.16%), Postives = 147/153 (96.08%), Query Frame = 2 
Query:    2 VPAMVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAFENSTGQTVGLVLIMSWVAFCALAIWTVRGGLSIVVLLHLGVVPIAVEVFESVLLFTSDSSTFITYVLAVLDLVIVAPALVLVPVYFRFLRDEERRRHAPL 460
            +P MVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAFENSTGQ VGLVLI+SWVAFCALAIWTVRGGLSIV+LLHLG+ P+ VEVFESVLLFTS SSTFITYVLAVL+LVIVAPALVLVPVYFRFLRDEERRR APL
Sbjct:   81 IPVMVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAFENSTGQAVGLVLILSWVAFCALAIWTVRGGLSIVILLHLGITPLGVEVFESVLLFTSSSSTFITYVLAVLNLVIVAPALVLVPVYFRFLRDEERRRRAPL 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12756.2097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI99_9PHAE1.530e-9092.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12756contigE-fasciculatus_F_contig12756:64..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_002900.1
Exons1
Model size1205
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12756.2097.1prot_E-fasciculatus_F_contig12756.2097.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12756 74..526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.586655-UTR-E-fasciculatus_F_contig12756:63..731622927782.586655-UTR-E-fasciculatus_F_contig12756:63..73Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12756 64..73 +
1695995691.8983302-UTR-E-fasciculatus_F_contig12756:63..731695995691.8983302-UTR-E-fasciculatus_F_contig12756:63..73Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12756 64..73 +
1622927782.6165118-UTR-E-fasciculatus_F_contig12756:526..12681622927782.6165118-UTR-E-fasciculatus_F_contig12756:526..1268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12756 527..1268 +
1695995691.9188666-UTR-E-fasciculatus_F_contig12756:526..12681695995691.9188666-UTR-E-fasciculatus_F_contig12756:526..1268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12756 527..1268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.5999944-CDS-E-fasciculatus_F_contig12756:73..5261622927782.5999944-CDS-E-fasciculatus_F_contig12756:73..526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12756 74..526 +
1695995691.9085584-CDS-E-fasciculatus_F_contig12756:73..5261695995691.9085584-CDS-E-fasciculatus_F_contig12756:73..526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12756 74..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12756.2097.1

>prot_E-fasciculatus_F_contig12756.2097.1 ID=prot_E-fasciculatus_F_contig12756.2097.1|Name=mRNA_E-fasciculatus_F_contig12756.2097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
MVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAF
ENSTGQTVGLVLIMSWVAFCALAIWTVRGGLSIVVLLHLGVVPIAVEVFE
SVLLFTSDSSTFITYVLAVLDLVIVAPALVLVPVYFRFLRDEERRRHAPL
*
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mRNA from alignment at E-fasciculatus_F_contig12756:64..1268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12756.2097.1 ID=mRNA_E-fasciculatus_F_contig12756.2097.1|Name=mRNA_E-fasciculatus_F_contig12756.2097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1205bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12756:64..1268+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGCCGGCCATGGTCCTGTGGGAAGGGATCTCAACGGGTTCGACGGAGA
TGATTTCAACGGCTCTCCACCGGGGTATCTGGGCCCAGACCGTCGTCTTC
CTGGTTACCCTGATCGCCTGCTGGAGCGCCTCACCGGGCACGCGGCCCGA
CTGGGCGTTCGAGAACTCCACGGGGCAGACGGTGGGGCTGGTGCTCATCA
TGTCATGGGTGGCGTTCTGCGCGCTGGCGATCTGGACGGTCCGCGGCGGC
CTGAGCATCGTCGTCCTCCTCCACCTCGGGGTTGTTCCCATCGCGGTGGA
GGTGTTCGAGAGCGTGCTGCTGTTCACGAGCGACTCCTCGACGTTCATCA
CGTACGTCCTGGCGGTTCTGGACCTGGTCATCGTTGCCCCCGCGCTGGTG
TTGGTGCCCGTGTACTTCCGGTTCCTGCGAGACGAGGAGAGGAGAAGACA
CGCCCCCTTGTGAGCCTGGGCGGTTAAAAGAGAAGACTACTTTATGACTC
CTGCGTGCGGTGGTGCTCGTTCGAAGGGCGCGCTGCCACACACAAGAGAG
CGCGCGGGAGACAACACGGGCGTGTACATGAGAGAAGAGGGGGGATGGCG
TCTTTTTTTTTATTGAAGAATTGGGGCATGAGAGCGCCAGCCCTGTCCAG
GTTCTGTAGCCGCTAAGTCCCAACTCACCGCCAACCCGTGAAAGCTGTAA
ATGAGCACTGCGTAAGCATGTTCGTTCCACCCGCACTTGGTGGCGGACGG
TGTTCCTCGCGCAAGCATTTGGTTGGCCGTGGTTTCGGTCCAAGTTCGTT
GAAGAGGGTCACGCGCTCGAAAGGCTGCATGCAGTCGATCGTGCATCTAG
GGCACCTGTCTTGCGCTTCACGCCTCATCTGAACGCTCCCAAGTATACGT
CTGGCTACACAGGTGTCTTGGAGATGGTGGGAACTGGTGTTTTCCCTGGT
TGCTGCTGTGCTGGTGGTGGTGTTGCTGTTGCTGCTGCTGATGCTGCTGC
TGTTGTCTTCACAGTAAAATAGGCGGGAACCTCTTTCCTGCATCTCCCCA
GCCGCTCCTTCTGCACAGGAAAAGAAATCGGGAAACCGGGAGACCCAGGA
AACCGCCCCCCCCACTCCACACTGATAGGAATTACGTGTGTGTATGTAAG
CTGTTTTCAGTTTTCAGTTTCTTTCATTTTGCCTGGGGCGTGTAATAATG
GCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12756:64..1268+

>mRNA_E-fasciculatus_F_contig12756.2097.1 ID=mRNA_E-fasciculatus_F_contig12756.2097.1|Name=mRNA_E-fasciculatus_F_contig12756.2097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12756:64..1268+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCCTGTGGGAAGGGATCTCAACGGGTTCGACGGAGATGATTTCAAC
GGCTCTCCACCGGGGTATCTGGGCCCAGACCGTCGTCTTCCTGGTTACCC
TGATCGCCTGCTGGAGCGCCTCACCGGGCACGCGGCCCGACTGGGCGTTC
GAGAACTCCACGGGGCAGACGGTGGGGCTGGTGCTCATCATGTCATGGGT
GGCGTTCTGCGCGCTGGCGATCTGGACGGTCCGCGGCGGCCTGAGCATCG
TCGTCCTCCTCCACCTCGGGGTTGTTCCCATCGCGGTGGAGGTGTTCGAG
AGCGTGCTGCTGTTCACGAGCGACTCCTCGACGTTCATCACGTACGTCCT
GGCGGTTCTGGACCTGGTCATCGTTGCCCCCGCGCTGGTGTTGGTGCCCG
TGTACTTCCGGTTCCTGCGAGACGAGGAGAGGAGAAGACACGCCCCCTTG
TGAATGGTCCTGTGGGAAGGGATCTCAACGGGTTCGACGGAGATGATTTC
AACGGCTCTCCACCGGGGTATCTGGGCCCAGACCGTCGTCTTCCTGGTTA
CCCTGATCGCCTGCTGGAGCGCCTCACCGGGCACGCGGCCCGACTGGGCG
TTCGAGAACTCCACGGGGCAGACGGTGGGGCTGGTGCTCATCATGTCATG
GGTGGCGTTCTGCGCGCTGGCGATCTGGACGGTCCGCGGCGGCCTGAGCA
TCGTCGTCCTCCTCCACCTCGGGGTTGTTCCCATCGCGGTGGAGGTGTTC
GAGAGCGTGCTGCTGTTCACGAGCGACTCCTCGACGTTCATCACGTACGT
CCTGGCGGTTCTGGACCTGGTCATCGTTGCCCCCGCGCTGGTGTTGGTGC
CCGTGTACTTCCGGTTCCTGCGAGACGAGGAGAGGAGAAGACACGCCCCC
TTGTGA
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