mRNA_E-fasciculatus_F_contig12754.2096.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12754.2096.1
Unique NamemRNA_E-fasciculatus_F_contig12754.2096.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.810e-38
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG
Sbjct:  292 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 361
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: L1K3I3_GUITC (DNA topoisomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3I3_GUITC)

HSP 1 Score: 100 bits (249), Expect = 4.330e-23
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            M EGRTQAPPLLSE+DLI LMD  GIGTDATIAEHI K+QQR YA+K++  +F PT+LG +LV  Y+ IG
Sbjct:  478 MTEGRTQAPPLLSEADLISLMDSHGIGTDATIAEHITKVQQRDYAIKSDSQQFSPTSLGKSLVTSYEAIG 547
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A158R560_9BILA (DNA topoisomerase n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A158R560_9BILA)

HSP 1 Score: 99.8 bits (247), Expect = 8.200e-23
Identity = 47/70 (67.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            M +G TQ PPLL+E+DLIGLM++ GIGTDAT AEHI+KI++R+YA  N+++RF P  LGLALVDGYDN+G
Sbjct:  478 MKDGYTQPPPLLNEADLIGLMEKYGIGTDATHAEHIEKIKKRQYATLNKENRFLPGYLGLALVDGYDNMG 547
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A139APE3_GONPJ (DNA topoisomerase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139APE3_GONPJ)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-22
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            +DE  TQ P LL+E+DLI LMD+ GIGTDATIA+HI+ IQ RKYAVK+   RF PTTLG AL++GYDN+G
Sbjct:  471 IDESSTQPPSLLTEADLITLMDKSGIGTDATIAQHIKTIQDRKYAVKDGNGRFSPTTLGFALIEGYDNMG 540
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A183UA66_TOXCA (DNA topoisomerase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UA66_TOXCA)

HSP 1 Score: 99.0 bits (245), Expect = 1.540e-22
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            M+EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+YA  N + RF P  LGLALVDGYD +G
Sbjct:  736 MNEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNNEKRFVPGYLGLALVDGYDRMG 805
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A0B2W574_TOXCA (DNA topoisomerase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W574_TOXCA)

HSP 1 Score: 99.0 bits (245), Expect = 1.540e-22
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            M+EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+YA  N + RF P  LGLALVDGYD +G
Sbjct:  561 MNEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNNEKRFVPGYLGLALVDGYDRMG 630
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: F1L3P3_ASCSU (DNA topoisomerase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L3P3_ASCSU)

HSP 1 Score: 98.2 bits (243), Expect = 2.010e-22
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+YA  N + RF P  LGLALVDGYD +G
Sbjct:  167 MSEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNAEKRFVPGYLGLALVDGYDRMG 236
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A0N5A5K3_PARTI (DNA topoisomerase n=1 Tax=Parastrongyloides trichosuri TaxID=131310 RepID=A0A0N5A5K3_PARTI)

HSP 1 Score: 98.6 bits (244), Expect = 2.090e-22
Identity = 46/71 (64.79%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 KMDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            +M EG T APPLLSESDLI LMD+ GIGTDAT AEHI+ I++RKYA+ N+++RFYP+ +GLALV+ Y+++G
Sbjct:  493 EMPEGTTTAPPLLSESDLISLMDKFGIGTDATHAEHIETIKKRKYAMLNKENRFYPSPIGLALVESYNHLG 563
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A7S2B941_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B941_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.270e-22
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 KMDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYD 204
            KM EGRT  PPLL E+DLI LM++ GIGTDATIAEHI K+Q R Y  K+  +RF  T LGL LVDGYD
Sbjct:   34 KMTEGRTAPPPLLHETDLIKLMERHGIGTDATIAEHIAKVQARSYVNKDASNRFRATPLGLVLVDGYD 101
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.310e-22
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 213
            + EGRT+ PPLLSESDLI LMD   IGTDATIAEHI+KIQ+R YA +  + RF PT LGLALVDGY+ +G
Sbjct:  308 LTEGRTEPPPLLSESDLIQLMDANRIGTDATIAEHIKKIQERGYAERCHESRFRPTVLGLALVDGYEALG 377
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12754.2096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI3.810e-38100.00DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
L1K3I3_GUITC4.330e-2368.57DNA topoisomerase n=1 Tax=Guillardia theta (strain... [more]
A0A158R560_9BILA8.200e-2367.14DNA topoisomerase n=1 Tax=Syphacia muris TaxID=451... [more]
A0A139APE3_GONPJ1.530e-2267.14DNA topoisomerase n=1 Tax=Gonapodya prolifera (str... [more]
A0A183UA66_TOXCA1.540e-2268.57DNA topoisomerase n=1 Tax=Toxocara canis TaxID=626... [more]
A0A0B2W574_TOXCA1.540e-2268.57DNA topoisomerase n=1 Tax=Toxocara canis TaxID=626... [more]
F1L3P3_ASCSU2.010e-2268.57DNA topoisomerase n=1 Tax=Ascaris suum TaxID=6253 ... [more]
A0A0N5A5K3_PARTI2.090e-2264.79DNA topoisomerase n=1 Tax=Parastrongyloides tricho... [more]
A0A7S2B941_9STRA4.270e-2266.18DNA topoisomerase (Fragment) n=1 Tax=Dictyocha spe... [more]
A0A835YM61_9STRA5.310e-2268.57DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12754contigE-fasciculatus_F_contig12754:2632..3649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue4.3e-32
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12754.2096.1prot_E-fasciculatus_F_contig12754.2096.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12754 2632..3646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.523755-CDS-E-fasciculatus_F_contig12754:2631..27121622927782.523755-CDS-E-fasciculatus_F_contig12754:2631..2712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12754 2632..2712 -
1695995691.8497887-CDS-E-fasciculatus_F_contig12754:2631..27121695995691.8497887-CDS-E-fasciculatus_F_contig12754:2631..2712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12754 2632..2712 -
1622927782.5344617-CDS-E-fasciculatus_F_contig12754:3517..36461622927782.5344617-CDS-E-fasciculatus_F_contig12754:3517..3646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12754 3518..3646 -
1695995691.8654423-CDS-E-fasciculatus_F_contig12754:3517..36461695995691.8654423-CDS-E-fasciculatus_F_contig12754:3517..3646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12754 3518..3646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.55068-UTR-E-fasciculatus_F_contig12754:3646..36491622927782.55068-UTR-E-fasciculatus_F_contig12754:3646..3649Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12754 3647..3649 -
1695995691.885623-UTR-E-fasciculatus_F_contig12754:3646..36491695995691.885623-UTR-E-fasciculatus_F_contig12754:3646..3649Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12754 3647..3649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12754.2096.1

>prot_E-fasciculatus_F_contig12754.2096.1 ID=prot_E-fasciculatus_F_contig12754.2096.1|Name=mRNA_E-fasciculatus_F_contig12754.2096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=70bp
MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQ
DRFYPTTLGLALVDGYDNIG
back to top

mRNA from alignment at E-fasciculatus_F_contig12754:2632..3649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12754.2096.1 ID=mRNA_E-fasciculatus_F_contig12754.2096.1|Name=mRNA_E-fasciculatus_F_contig12754.2096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1018bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12754:2632..3649- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGATGGACGAGGGTAGGACGCAAGCACCGCCCCTCCTCAGCGAGTCGGA
CCTGATCGGGCTGATGGACCAAAAGGGCATCGGGACCGACGCCACGATCG
CAGAGCACATCCAGAAGATCCAGCAGAGAAAAGTGGGTGTGGGGGCTACA
ACTGCATGAGGCAGTGCAGAGATGGATGCGTACACACGTGGTAGTAGGAG
AGTAGGGCATCCTCGGGCTCATGCAACAGCCTGAGAGGAGAAAGGGGCGG
CGAAAATGTTATCCCCGAGATCGTTACTTTTTACTAGTTATTTTTGATAG
AATGTCGATGTCGACGCCTAAAGATACAGCAAAGGCCGGCGGAATGGTAA
GTCGTGCAGAGAAAAGAAAGGAAACAATTTACAGGTAGCATAGGGCGTCC
ATTACAAAGTGCACGATATCCACATGGAGATGAATCGAGTGGTTGCACGT
GGTGTAGAGAATCATACATCGTTTGACACAACGCGATGGCAAAGGAGGCA
GCGAAAATGCTGTTGAGGGAGGCAACCACAACGTTGTGGTAGGGCAAGTG
CACATTCAGAACTGTAGTTGGAGGGGGCACCGGGGATGACAGCTTACTTC
TCCGTACAACAATTGACACGATCTTCTTTGCGGTATATTTTCCTTTCTTT
TCCGGCTATTGAAACTGTTTTGACCCTACACACCAAGTGTTGCATCAAAG
TGCTAGGGTGTCCGTCATCGTCCTCATCTTGCACTAGAACTGGGACCTCA
AAACCAAAAAAATAATACATTTACACAACCTAAACCGCCGACAACATATA
CGCAGCATATAACGCGCTTCAATGAGCTGAACAGGCTGCTAGATTCTAGG
TATTCCAGTGTTCCATGAGGTTTTCGCGCGGTACTCGTCTCTACCCCGCC
CCCTTCTCTCTTGCAAACCCTGTGGACACGGTGGTAGTACGCTGTCAAGA
ATGAGCAGGACCGCTTCTACCCGACCACGCTGGGGCTCGCCCTGGTGGAC
GGGTACGACAACATCGGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12754:2632..3649-

>mRNA_E-fasciculatus_F_contig12754.2096.1 ID=mRNA_E-fasciculatus_F_contig12754.2096.1|Name=mRNA_E-fasciculatus_F_contig12754.2096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12754:2632..3649- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGAGGGTAGGACGCAAGCACCGCCCCTCCTCAGCGAGTCGGACCT
GATCGGGCTGATGGACCAAAAGGGCATCGGGACCGACGCCACGATCGCAG
AGCACATCCAGAAGATCCAGCAGAGAAAAATGGACGAGGGTAGGACGCAA
GCACCGCCCCTCCTCAGCGAGTCGGACCTGATCGGGCTGATGGACCAAAA
GGGCATCGGGACCGACGCCACGATCGCAGAGCACATCCAGAAGATCCAGC
AGAGAAAATACGCTGTCAAGAATGAGCAGGACCGCTTCTACCCGACCACG
CTGGGGCTCGCCCTGGTGGACGGGTACGACAACATCGGTTACGCTGTCAA
GAATGAGCAGGACCGCTTCTACCCGACCACGCTGGGGCTCGCCCTGGTGG
ACGGGTACGACAACATCGGT
back to top