mRNA_E-fasciculatus_F_contig1275.2093.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1275.2093.1
Unique NamemRNA_E-fasciculatus_F_contig1275.2093.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: G0J7N1_CYCMS (RHS repeat-associated core domain-containing protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745 / LMG 13164 / NCIMB 1802) TaxID=880070 RepID=G0J7N1_CYCMS)

HSP 1 Score: 76.6 bits (187), Expect = 5.040e-14
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 EYDALMALYEATNGGSWTNNVGWG-----INRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYL 219
            EYDALMALY++TNG +WTNN GW      + + ++G+ G+T+T  G V +++L+ NNL G LP ++G L  L
Sbjct:  738 EYDALMALYQSTNGANWTNNTGWRDADPMVLQSVQGWSGVTITGVGSVVELDLKNNNLTGTLPNEIGDLTNL 809
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: UPI001F23B794 (hypothetical protein n=1 Tax=Algoriphagus sp. AGSA1 TaxID=2907213 RepID=UPI001F23B794)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-12
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   19 EYDALMALYEATNGGSWTNNVGWG-----INRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYL 219
            EYDALM LY+ATNG +WTNN GW      + +D+ GFYG+     G+V  I +  N L G +P  +G L +L
Sbjct:  163 EYDALMDLYQATNGANWTNNTGWSSANPNVIQDVSGFYGVHTNANGNVTGIFMSSNKLLGEIPESIGNLAHL 234
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A2V4BQJ4_9FLAO (Ig-like domain-containing protein n=1 Tax=Flavobacterium cheongpyeongense TaxID=2212651 RepID=A0A2V4BQJ4_9FLAO)

HSP 1 Score: 72.0 bits (175), Expect = 2.050e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 MELVSDEYDALMALYEATNGGSWTNNVGWGINRDI-KGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYLVSI 228
            +++   E DAL+ALY +TNG +WTN  GW  +  +  G+YGIT+TE GHV  + L  N L G +P ++G L  L S+
Sbjct:  100 VDIPQTEKDALLALYNSTNGSNWTNKTGWDFSTPVTSGWYGITVTE-GHVTGVVLSNNKLSGTIPAEIGLLTKLTSL 175
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: R6MRA8_9BACE (Leucine Rich Repeat protein n=2 Tax=environmental samples TaxID=139043 RepID=R6MRA8_9BACE)

HSP 1 Score: 70.9 bits (172), Expect = 5.140e-12
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   19 EYDALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYLVSI 228
            E DAL+ALY+ATNG +WTNN  W  + D+  +YGI     G V  I L  NNL G +P ++G L  L ++
Sbjct:  285 ERDALIALYDATNGDAWTNNTNWCTDADLSEWYGIYTDNNGKVSSISLSSNNLTGTIPDEIGNLEALWTL 354
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A6H5JMX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.300e-12
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   25 DALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKL 210
            DAL+ALY  T G SW N  GWG +R +  +YG+T    G V  +ELR NNL G +P  LG+L
Sbjct:   17 DALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGSIPAGLGEL 78
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A6B1DD80_9CHLR (Uncharacterized protein n=1 Tax=Caldilineaceae bacterium SB0661_bin_32 TaxID=2605255 RepID=A0A6B1DD80_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 6.990e-12
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   19 EYDALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYL 219
            E DAL+ALY+ T+G +WTNN  W  N  +  ++G+T    G V +++L EN L+G +P +LG L YL
Sbjct:   39 ERDALVALYQDTDGNNWTNNRNWLSNASLDSWHGVTTDRNGRVVELDLSENELNGTIPSELGNLSYL 105
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A6B0YVP7_9CHLR (SH3 domain-containing protein n=2 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6B0YVP7_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 7.140e-12
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   13 SDEYDALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYL 219
            S + DAL+ALY+ T+G +WTNN  W  N  +  ++G+T    G V +++L EN L+G +P +LG L YL
Sbjct:   37 SSDRDALVALYQDTDGDNWTNNRNWLSNASLDSWHGVTTDRNGRVVELDLSENELNGTIPSELGNLTYL 105
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A399SXQ8_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=Maribellus luteus TaxID=2305463 RepID=A0A399SXQ8_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 9.680e-12
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   19 EYDALMALYEATNGGSWTNNVGW-GINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYLVSI 228
            EY+AL+ LYE+TNG +WTNN  W         ++GITL ++GHV  I L +NNL G +P+ +G L+ L +I
Sbjct:  257 EYEALVDLYESTNGNNWTNNSNWLDTTVSFNEWHGITLDDEGHVKYILLLDNNLSGYIPKSIGSLKQLSAI 327
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BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A7X4FIX1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FIX1_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 9.690e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   25 DALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYL 219
            +AL+ALY AT+G +WTNN  W  + DI  +YG+ +++ G V ++ELRENNL G LP +LG L  L
Sbjct:  784 EALVALYNATDGPNWTNNTNWLTDNDISTWYGVEVSD-GSVTELELRENNLTGELPVELGNLTNL 847
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Match: A0A845CVP7_9CHLR (SH3 domain-containing protein n=1 Tax=Caldilineaceae bacterium SB0662_bin_25 TaxID=2605257 RepID=A0A845CVP7_9CHLR)

HSP 1 Score: 70.1 bits (170), Expect = 9.750e-12
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   19 EYDALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVCKIELRENNLDGRLPRDLGKLRYL 219
            E DAL+ALY+ T+G +WTNN  W  N  +  ++G+T    G V +++L EN L+G +P +LG L YL
Sbjct:   39 ERDALVALYQDTDGDNWTNNRNWLSNASLDSWHGVTTDRNGRVVELDLSENELNGTIPSELGNLTYL 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1275.2093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G0J7N1_CYCMS5.040e-1447.22RHS repeat-associated core domain-containing prote... [more]
UPI001F23B7941.040e-1245.83hypothetical protein n=1 Tax=Algoriphagus sp. AGSA... [more]
A0A2V4BQJ4_9FLAO2.050e-1244.16Ig-like domain-containing protein n=1 Tax=Flavobac... [more]
R6MRA8_9BACE5.140e-1245.71Leucine Rich Repeat protein n=2 Tax=environmental ... [more]
A0A6H5JMX8_9PHAE5.300e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1DD80_9CHLR6.990e-1244.78Uncharacterized protein n=1 Tax=Caldilineaceae bac... [more]
A0A6B0YVP7_9CHLR7.140e-1243.48SH3 domain-containing protein n=2 Tax=unclassified... [more]
A0A399SXQ8_9BACT9.680e-1246.48T9SS C-terminal target domain-containing protein n... [more]
A0A7X4FIX1_9BACT9.690e-1250.77Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A845CVP7_9CHLR9.750e-1244.78SH3 domain-containing protein n=1 Tax=Caldilineace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1275contigE-fasciculatus_F_contig1275:17105..18100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.7
Seed ortholog evalue3e-11
Seed eggNOG ortholog880070.Cycma_3256
EggNOG free text desc.TIGRFAM RHS repeat-associated core domain
EggNOG OGs47MBZ@768503,4NE5D@976,COG3209@1,COG3209@2,COG4886@1,COG4886@2
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-06_000720.1
COG Functional cat.M
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1275.2093.1prot_E-fasciculatus_F_contig1275.2093.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1275 17105..18100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.3538954-CDS-E-fasciculatus_F_contig1275:17104..171781622927782.3538954-CDS-E-fasciculatus_F_contig1275:17104..17178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 17105..17178 -
1695995691.79328-CDS-E-fasciculatus_F_contig1275:17104..171781695995691.79328-CDS-E-fasciculatus_F_contig1275:17104..17178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 17105..17178 -
1622927782.3729937-CDS-E-fasciculatus_F_contig1275:17422..174941622927782.3729937-CDS-E-fasciculatus_F_contig1275:17422..17494Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 17423..17494 -
1695995691.8051572-CDS-E-fasciculatus_F_contig1275:17422..174941695995691.8051572-CDS-E-fasciculatus_F_contig1275:17422..17494Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 17423..17494 -
1622927782.386828-CDS-E-fasciculatus_F_contig1275:17919..181001622927782.386828-CDS-E-fasciculatus_F_contig1275:17919..18100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 17920..18100 -
1695995691.813867-CDS-E-fasciculatus_F_contig1275:17919..181001695995691.813867-CDS-E-fasciculatus_F_contig1275:17919..18100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 17920..18100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1275.2093.1

>prot_E-fasciculatus_F_contig1275.2093.1 ID=prot_E-fasciculatus_F_contig1275.2093.1|Name=mRNA_E-fasciculatus_F_contig1275.2093.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
MELVSDEYDALMALYEATNGGSWTNNVGWGINRDIKGFYGITLTEKGHVC
KIELRENNLDGRLPRDLGKLRYLVSINLGGNQLGGAIPAELGDLPELWFL
DLSHNALQG
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mRNA from alignment at E-fasciculatus_F_contig1275:17105..18100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1275.2093.1 ID=mRNA_E-fasciculatus_F_contig1275.2093.1|Name=mRNA_E-fasciculatus_F_contig1275.2093.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1275:17105..18100- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAACTGGTCAGCGACGAGTACGATGCGCTGATGGCCCTATATGAGGC
CACCAACGGGGGGTCTTGGACCAACAATGTCGGTTGGGGTATCAACAGAG
ATATAAAGGGCTTTTACGGGATCACGCTTACAGAGAAAGGCCATGTCTGC
AAGATCGAGCTACGGGAGAACAACTTGGACGGTGAGAGAGAACCCGCAAG
TGTCACTTAGGGGCAGACGACAGAGTCCAATAATGGGAGGAAAAAAAAAA
AAACTTAGCTTCAATCTCCGTTCCAACACTGTGCTAATTCTCACCACGAA
TCGGTAGGAGGAACGGTGGTTTCCTGCTGGACCATCCGATATTGAACTTT
TATTACGAAATTGTCTCCCGATTACCTCCCTCAAAGTGATGCCTAACCAG
CTGCATGTCGTTGTCCGGTCTTCAATTCTGTTGCTCCATGTTCCACACGT
TGTTCGTTTGTGGTGCATCCTGCGTATCCTCTCGACGTCTTCGTACGATT
GGCGATTTTTGCTCACGCTATTGTAGAAAGTGACTCCGCTCAAAAATATA
ACGTAATAGGATGCCGACTCTGCCAACATTCGAGCTCTGACGCCATGTCG
ACGCAGGACGACTCCCGCGCGATCTGGGGAAATTGCGCTACCTCGTGTCC
ATCAATCTAGGCGGGAACCAACTGGGTGGTAAGTGGACCGGGTGTGCTTG
GGTGGGTTTCATCGACTCGGAGGGTATGTTGTTGACATTTTTTTCTTCAA
AGCGTTAGCATTGCGTTGGCACAACGCACAAAAGCCAATGTGTGGAGTGC
CTCCCCACCAAGCTCTCGAGTCGAGATTCGAATGCTCCTGATACGACTAT
GGCTGCGGGCTCTGCTTCACTATCGGTCGCTCTACGGGGCGACTCTGCTT
TGGGCGTTTTTATTATGTTCAGGAGCGATCCCTGCAGAGCTTGGCGATCT
ACCTGAGCTTTGGTTTCTTGATCTCAGCCACAACGCGCTACAAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1275:17105..18100-

>mRNA_E-fasciculatus_F_contig1275.2093.1 ID=mRNA_E-fasciculatus_F_contig1275.2093.1|Name=mRNA_E-fasciculatus_F_contig1275.2093.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1275:17105..18100- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAACTGGTCAGCGACGAGTACGATGCGCTGATGGCCCTATATGAGGC
CACCAACGGGGGGTCTTGGACCAACAATGTCGGTTGGGGTATCAACAGAG
ATATAAAGGGCTTTTACGGGATCACGCTTACAGAGAAAGGCCATGTCTGC
AAGATCGAGCTACGGGAGAACAACTTGGACGATGGAACTGGTCAGCGACG
AGTACGATGCGCTGATGGCCCTATATGAGGCCACCAACGGGGGGTCTTGG
ACCAACAATGTCGGTTGGGGTATCAACAGAGATATAAAGGGCTTTTACGG
GATCACGCTTACAGAGAAAGGCCATGTCTGCAAGATCGAGCTACGGGAGA
ACAACTTGGACGGACGACTCCCGCGCGATCTGGGGAAATTGCGCTACCTC
GTGTCCATCAATCTAGGCGGGAACCAACTGGGTGGACGACTCCCGCGCGA
TCTGGGGAAATTGCGCTACCTCGTGTCCATCAATCTAGGCGGGAACCAAC
TGGGTGGAGCGATCCCTGCAGAGCTTGGCGATCTACCTGAGCTTTGGTTT
CTTGATCTCAGCCACAACGCGCTACAAGGTGAGCGATCCCTGCAGAGCTT
GGCGATCTACCTGAGCTTTGGTTTCTTGATCTCAGCCACAACGCGCTACA
AGGT
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