mRNA_E-fasciculatus_F_contig1275.2091.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1275.2091.1
Unique NamemRNA_E-fasciculatus_F_contig1275.2091.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: A0A6H5JLB7_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-9
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   12 KDCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAK 152
            +D L FD YAEVL E +R   +WPV +GI+AQWGAGK+SLL L+L +
Sbjct:  163 QDKLDFDKYAEVLVERLRDPDTWPVSLGIYAQWGAGKSSLLRLILER 209
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 7.940e-7
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:   15 DCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTS 128
            DCL F  YA+VL E +   ++WPVG+G++AQWGAGK++
Sbjct:  301 DCLEFGDYADVLVERMTDPAAWPVGVGVYAQWGAGKSA 338
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: A0A5E4ZAK1_9BURK (NTPase KAP n=1 Tax=Pandoraea anhela TaxID=2508295 RepID=A0A5E4ZAK1_9BURK)

HSP 1 Score: 48.1 bits (113), Expect = 3.020e-5
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 3 
Query:   15 DCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAKLNGGDD 170
            D L F + A+  A+ IR  +  P+ IGI   WG GK+SL+ +V A L G DD
Sbjct:   10 DLLNFSVVADTAAQLIRDSAGEPLSIGISGSWGVGKSSLVKMVAASLEGDDD 61
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: A0A5K7ZMU0_9DELT (KAP NTPase domain-containing protein n=1 Tax=Desulfosarcina ovata subsp. sediminis TaxID=885957 RepID=A0A5K7ZMU0_9DELT)

HSP 1 Score: 49.7 bits (117), Expect = 4.600e-5
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 3 
Query:   15 DCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAKLNGGDDTKQSGRDI 194
            D L F+ YA+VLA  +   SS P+ IG+FA WGAGKTSL++L+  KL    +  +   DI
Sbjct:   24 DQLEFNAYAKVLARSM-INSSEPLTIGVFAGWGAGKTSLMNLMKQKLEDITNNSKHNSDI 82
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: A0A1W2CS39_9SPHI (Predicted P-loop ATPase, KAP-like n=1 Tax=Pedobacter africanus TaxID=151894 RepID=A0A1W2CS39_9SPHI)

HSP 1 Score: 49.3 bits (116), Expect = 6.330e-5
Identity = 21/58 (36.21%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   12 KDCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAKLNGGDDTKQSG 185
            +D L F ++A++L + I+  +  P+ IG+F  WG+GK+S+L ++  +L+G DD  + G
Sbjct:    9 EDLLGFKVHADLLVDVIKDDALLPITIGVFGDWGSGKSSILKIINDELSGDDDELKDG 66
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: UPI000FEC0416 (P-loop NTPase fold protein n=1 Tax=Apibacter sp. HY039 TaxID=2501476 RepID=UPI000FEC0416)

HSP 1 Score: 49.3 bits (116), Expect = 6.330e-5
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   12 KDCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAKLNGG 164
            +D L F ++A++L + IR     PV IG+F  WG+GK+S+L +V  +L GG
Sbjct:    9 EDLLGFKVHADLLVDVIRDDKVLPVTIGVFGDWGSGKSSILQIVKEELTGG 59
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BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Match: A0A5Q4VEU6_9DELT (Uncharacterized protein n=2 Tax=Desulfobotulus mexicanus TaxID=2586642 RepID=A0A5Q4VEU6_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 8.550e-5
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 ASPKDCLRFDMYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAKLN 158
            +S +D L F  Y++++A  I+ G+  P  IGIF +WG GKTSLL+L+  KL+
Sbjct:   19 SSREDGLGFSTYSDIIASTIK-GTPGPFTIGIFGEWGTGKTSLLNLIKDKLS 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1275.2091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JLB7_9PHAE1.130e-959.57KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
D7FSL6_ECTSI7.940e-755.26Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A5E4ZAK1_9BURK3.020e-544.23NTPase KAP n=1 Tax=Pandoraea anhela TaxID=2508295 ... [more]
A0A5K7ZMU0_9DELT4.600e-546.67KAP NTPase domain-containing protein n=1 Tax=Desul... [more]
A0A1W2CS39_9SPHI6.330e-536.21Predicted P-loop ATPase, KAP-like n=1 Tax=Pedobact... [more]
UPI000FEC04166.330e-543.14P-loop NTPase fold protein n=1 Tax=Apibacter sp. H... [more]
A0A5Q4VEU6_9DELT8.550e-546.15Uncharacterized protein n=2 Tax=Desulfobotulus mex... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1275contigE-fasciculatus_F_contig1275:12042..12516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1275.2091.1prot_E-fasciculatus_F_contig1275.2091.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1275 12042..12484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.7945945-CDS-E-fasciculatus_F_contig1275:12041..121581622927781.7945945-CDS-E-fasciculatus_F_contig1275:12041..12158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 12042..12158 -
1695995691.5465746-CDS-E-fasciculatus_F_contig1275:12041..121581695995691.5465746-CDS-E-fasciculatus_F_contig1275:12041..12158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 12042..12158 -
1622927781.8753617-CDS-E-fasciculatus_F_contig1275:12394..124841622927781.8753617-CDS-E-fasciculatus_F_contig1275:12394..12484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 12395..12484 -
1695995691.5558748-CDS-E-fasciculatus_F_contig1275:12394..124841695995691.5558748-CDS-E-fasciculatus_F_contig1275:12394..12484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 12395..12484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.8879967-UTR-E-fasciculatus_F_contig1275:12484..125161622927781.8879967-UTR-E-fasciculatus_F_contig1275:12484..12516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1275 12485..12516 -
1695995691.5658479-UTR-E-fasciculatus_F_contig1275:12484..125161695995691.5658479-UTR-E-fasciculatus_F_contig1275:12484..12516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1275 12485..12516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1275.2091.1

>prot_E-fasciculatus_F_contig1275.2091.1 ID=prot_E-fasciculatus_F_contig1275.2091.1|Name=mRNA_E-fasciculatus_F_contig1275.2091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MYAEVLAEHIRCGSSWPVGIGIFAQWGAGKTSLLDLVLAKLNGGDDTKQS
GRDIENQLQTNQPQTTQPQ
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mRNA from alignment at E-fasciculatus_F_contig1275:12042..12516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1275.2091.1 ID=mRNA_E-fasciculatus_F_contig1275.2091.1|Name=mRNA_E-fasciculatus_F_contig1275.2091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=475bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1275:12042..12516- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCAAGTCCCAAAGACTGTTTACGGTTCGACATGTACGCGGAGGTTCTC
GCCGAACACATTCGGTGTGGAAGTTCGTGGCCCGTCGGGATCGGTATTTT
TGCTCAATGGGGGGCTGGCAAGGTAAGATCGTGCCACCGCAATGTTGGAG
TACTTGGCAGTTCTGCCAACAATGCCACACGTCCCCCCCCGGAGGAACAT
ACAGTACGAGCAAGATGCCATCTCTCTTTGTCACGATTGGCGCAGCAGTT
AAATATCTTCCTGACCGGCCAAACACTGGCTCCCCCAACATCCACTGATT
TCGATCGACATGGCATCTCTTCCGGTGGTTTGCCAATGGATTGCTTTTGG
GTGGCCAGACCTCTCTCCTGGATCTCGTCCTAGCCAAGTTGAACGGCGGC
GACGACACCAAACAGTCCGGCCGTGACATCGAAAATCAGCTGCAGACGAA
TCAGCCGCAGACGACTCAGCCGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1275:12042..12516-

>mRNA_E-fasciculatus_F_contig1275.2091.1 ID=mRNA_E-fasciculatus_F_contig1275.2091.1|Name=mRNA_E-fasciculatus_F_contig1275.2091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1275:12042..12516- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGCGGAGGTTCTCGCCGAACACATTCGGTGTGGAAGTTCGTGGCC
CGTCGGGATCGGTATTTTTGCTCAATGGGGGGCTGGCAAGATGTACGCGG
AGGTTCTCGCCGAACACATTCGGTGTGGAAGTTCGTGGCCCGTCGGGATC
GGTATTTTTGCTCAATGGGGGGCTGGCAAGACCTCTCTCCTGGATCTCGT
CCTAGCCAAGTTGAACGGCGGCGACGACACCAAACAGTCCGGCCGTGACA
TCGAAAATCAGCTGCAGACGAATCAGCCGCAGACGACTCAGCCGCAGACC
TCTCTCCTGGATCTCGTCCTAGCCAAGTTGAACGGCGGCGACGACACCAA
ACAGTCCGGCCGTGACATCGAAAATCAGCTGCAGACGAATCAGCCGCAGA
CGACTCAGCCGCAG
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