mRNA_E-fasciculatus_F_contig12744.2087.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12744.2087.1
Unique NamemRNA_E-fasciculatus_F_contig12744.2087.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: D8LGI7_ECTSI (TIP120 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI7_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.460e-47
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QEIKECAITSMGLLLAHLSSDLN QLPEVLGLL+DRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETL ALI
Sbjct:  523 QEIKECAITSMGLLLAHLSSDLNNQLPEVLGLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLLALI 618
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A7S2CTN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTN9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.250e-26
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QEIKECAI ++G L++ L   L  +LP V GLL++RL NE+TRM TLKA+A +  SP+ +DL PIL  A +EL+QFLRQQSRPLKQTTLETL AL+
Sbjct:  381 QEIKECAIIAVGQLVSTLGDQLTDRLPVVEGLLMERLRNEITRMPTLKAIAMICASPIGIDLTPILNEAIQELSQFLRQQSRPLKQTTLETLMALV 476
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A7S2FNG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNG9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.380e-25
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QEIKECAI ++G L+A L   LN++LP +  LL+DRL NE+TRM TLKAL  ++ S LK+DL P+L     EL +FLRQQSRPLKQ TLETL ALI
Sbjct:  588 QEIKECAIMAVGQLVASLGDKLNEELPIIEQLLMDRLRNEITRMPTLKALTMIAKSSLKIDLMPVLSQVVNELCRFLRQQSRPLKQKTLETLMALI 683
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A4D9CRZ7_9STRA (TIP120 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRZ7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.030e-21
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNK-QLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QEIKE AI ++G L+AH    L K +L  VL LL+++L NE+TR  TL+ALA V+ SPL +DL PIL  A EELA FLRQQSRPLK  TLETL  L+
Sbjct:  269 QEIKEGAILAVGKLVAHAGDRLPKDELAGVLALLMEKLKNEITRTPTLRALAGVAASPLGIDLSPILAEAVEELAMFLRQQSRPLKLATLETLIGLV 365
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: W7U372_9STRA (Cullin-associated nedd8-dissociated protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U372_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.730e-21
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNK-QLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QEIKE AI ++G L+AH    L K +L  VL LL+++L NE+TR  TL+ALA V+ SPL +DL PIL  A EELA FLRQQSRPLK  TLE+L  L+
Sbjct:  648 QEIKEGAILAVGKLVAHAGDCLPKNELAGVLALLMEKLKNEITRTPTLRALAGVAASPLGIDLSPILAEAVEELAMFLRQQSRPLKLATLESLIGLV 744
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A5N5F1M1_9ROSA (Cullin-associated NEDD8-dissociated protein 1-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F1M1_9ROSA)

HSP 1 Score: 95.1 bits (235), Expect = 9.780e-21
Identity = 48/96 (50.00%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QE+KECAI+ MGL+++    +L+ +LP  L +L+DR+GNE+TR+  +KA A ++VSPLK+DL  +L     EL  FLR+ +RPL+Q TL TL +LI
Sbjct:  619 QEVKECAISCMGLVVSKFGDNLDVELPVCLPVLVDRMGNEITRLTAVKAFAVIAVSPLKIDLSCVLEQVIAELTAFLRKANRPLRQATLGTLNSLI 714
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A2D4C4D5_PYTIN (TIP120 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D5_PYTIN)

HSP 1 Score: 94.0 bits (232), Expect = 2.460e-20
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QEIKE AI+ +G LLA L   L   +  V  LL+DRL NE+TR+ ++KALA ++ SPLK+D+ PIL SAT  +AQ LRQQSR LKQ TL++L  +I
Sbjct:  539 QEIKESAISCVGQLLARLGDQLGDGVNVVFPLLMDRLNNEITRVQSMKALAVIASSPLKLDMTPILASATTTMAQLLRQQSRTLKQATLDSLNVVI 634
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: W9SU03_9ROSA (TIP120 domain-containing protein n=9 Tax=fabids TaxID=91835 RepID=W9SU03_9ROSA)

HSP 1 Score: 93.6 bits (231), Expect = 3.370e-20
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QE+KECAIT MGL+++    +L  +LP  L +L+DR+GNE+TR+  +KA A ++ SPL++DL  +L     EL  FLR+ +RPL+Q TL TL +LI
Sbjct:  600 QEVKECAITCMGLVVSTFGDNLKAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLQIDLSCVLEQVITELTAFLRKANRPLRQATLGTLNSLI 695
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A7I8JCD8_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JCD8_SPIIN)

HSP 1 Score: 93.2 bits (230), Expect = 4.590e-20
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QE+KECAI+ MGL ++    +L ++LP  L +L+DR+GNE+TR+  +KA A +S SPL++DL  ++     EL  FLR+ +R L+Q TLETL +L+
Sbjct:  537 QEVKECAISCMGLAISTFGDNLQRELPSCLPVLVDRMGNEITRLTAVKAFAVISGSPLRIDLSSVMEQVVAELTTFLRKANRSLRQATLETLNSLV 632
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BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Match: A0A251QPU0_PRUPE (TIP120 domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251QPU0_PRUPE)

HSP 1 Score: 93.2 bits (230), Expect = 4.590e-20
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI 288
            QE+KECAI+ MGL+++    +L+ +LP  L +L+DR+GNE+TR+  +KA A ++ SPLK+DL  +L     EL  FLR+ +RPL+Q TL TL +LI
Sbjct:  575 QEVKECAISCMGLVVSTFGDNLDVELPVCLPVLVDRMGNEITRLTAVKAFAVIAASPLKIDLSCVLEQVIAELTAFLRKANRPLRQATLGTLNSLI 670
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12744.2087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI7_ECTSI3.460e-4796.88TIP120 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2CTN9_9STRA1.250e-2662.50Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2FNG9_9STRA3.380e-2561.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CRZ7_9STRA2.030e-2159.79TIP120 domain-containing protein n=1 Tax=Nannochlo... [more]
W7U372_9STRA9.730e-2158.76Cullin-associated nedd8-dissociated protein 1 n=1 ... [more]
A0A5N5F1M1_9ROSA9.780e-2150.00Cullin-associated NEDD8-dissociated protein 1-like... [more]
A0A2D4C4D5_PYTIN2.460e-2055.21TIP120 domain-containing protein n=1 Tax=Pythium i... [more]
W9SU03_9ROSA3.370e-2048.96TIP120 domain-containing protein n=9 Tax=fabids Ta... [more]
A0A7I8JCD8_SPIIN4.590e-2046.88Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A251QPU0_PRUPE4.590e-2048.96TIP120 domain-containing protein n=1 Tax=Prunus pe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12744contigE-fasciculatus_F_contig12744:8..918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2e-34
Seed eggNOG ortholog2880.D8LGI7
Preferred nameCAND1
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.SCF complex assembly
EggNOG OGsKOG1824@1,KOG1824@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12744.2087.1prot_E-fasciculatus_F_contig12744.2087.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12744 8..888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.675535-CDS-E-fasciculatus_F_contig12744:7..2111622927781.675535-CDS-E-fasciculatus_F_contig12744:7..211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12744 8..211 -
1695995691.4898014-CDS-E-fasciculatus_F_contig12744:7..2111695995691.4898014-CDS-E-fasciculatus_F_contig12744:7..211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12744 8..211 -
1622927781.6898475-CDS-E-fasciculatus_F_contig12744:834..8881622927781.6898475-CDS-E-fasciculatus_F_contig12744:834..888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12744 835..888 -
1695995691.5001404-CDS-E-fasciculatus_F_contig12744:834..8881695995691.5001404-CDS-E-fasciculatus_F_contig12744:834..888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12744 835..888 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.7048595-UTR-E-fasciculatus_F_contig12744:888..9181622927781.7048595-UTR-E-fasciculatus_F_contig12744:888..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12744 889..918 -
1695995691.5090156-UTR-E-fasciculatus_F_contig12744:888..9181695995691.5090156-UTR-E-fasciculatus_F_contig12744:888..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12744 889..918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12744.2087.1

>prot_E-fasciculatus_F_contig12744.2087.1 ID=prot_E-fasciculatus_F_contig12744.2087.1|Name=mRNA_E-fasciculatus_F_contig12744.2087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MGLLLAHLSSDLNKQLPEVLGLLLDRLGNEMTRMATLKALAAVSVSPLKV
DLKPILPSATEELAQFLRQQSRPLKQTTLETLRALI
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mRNA from alignment at E-fasciculatus_F_contig12744:8..918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12744.2087.1 ID=mRNA_E-fasciculatus_F_contig12744.2087.1|Name=mRNA_E-fasciculatus_F_contig12744.2087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=911bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12744:8..918- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGATCAAGGAGTGCGCAATCACCTCGATGGGTCTGCTGCTGGCGCA
CCTCTCCTCCGACCTCAACAAGCAGCTGCCTGAGGTACGCGCCTATGTTA
TTATGTTGATGGTGATGATGGTTTTGGTAGTTGTTGTGGTATTTGTCTTG
ACGGGAAGGACGTGTTTTTTTTTTTTTTTTNNNNNNNNNNTAGTCGGAAG
CGTGTACCCTTTTGGTGGGTATGTCCTGTACAGTACCCACGGAAGGTGCT
CGCGTCAGTTGCACAGGTACACTGGTGCAGACGTTAGGAGGCACCGAGCA
GCAAAACCGGAACTGTTTTTGTTTGTTCGTGTGTGAACCCTACAACATAA
CGAGCGGTCTAAACGGAGATGTTGAGCGCTTGGTATTTACCTTCATGGAG
AGTGCGACTGCAACGGACCCTGCGACAGATGTTGTTGTTGTTCCTGCGAT
ACGAGCCACTTTGCTGTGGTCGCCCACCCCTCGCGCTCCATGTCAACACC
CAACCCTGTGTACACACGAAAAGCTGTTCTGGAATGGAATACATAGGTTC
GACTTCCACAAAGGGGTCGTCACAAGGTTTTGTCTGTGTTCTTTCGTACG
CATGAGCCTCCTTACTTGCGCCGCATCTCGACCATCTGTATTTCGCGAAA
CCTAACCTCCTGTCTAAAAAGCTCGGCTAAAATGAGAATCGTGCGCCGGA
CGCACAGGTGCTGGGCCTGCTGTTGGACCGCCTGGGCAACGAGATGACCA
GGATGGCCACCCTCAAGGCGCTGGCCGCAGTATCGGTCAGCCCCCTCAAG
GTGGACCTGAAGCCCATCCTGCCCTCCGCCACGGAGGAGCTGGCGCAGTT
CCTCCGGCAGCAGTCGAGGCCCCTCAAGCAGACCACGCTAGAGACCCTGC
GCGCCTTGATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12744:8..918-

>mRNA_E-fasciculatus_F_contig12744.2087.1 ID=mRNA_E-fasciculatus_F_contig12744.2087.1|Name=mRNA_E-fasciculatus_F_contig12744.2087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12744:8..918- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTCTGCTGCTGGCGCACCTCTCCTCCGACCTCAACAAGCAGCTGCC
TGAGATGGGTCTGCTGCTGGCGCACCTCTCCTCCGACCTCAACAAGCAGC
TGCCTGAGGTGCTGGGCCTGCTGTTGGACCGCCTGGGCAACGAGATGACC
AGGATGGCCACCCTCAAGGCGCTGGCCGCAGTATCGGTCAGCCCCCTCAA
GGTGGACCTGAAGCCCATCCTGCCCTCCGCCACGGAGGAGCTGGCGCAGT
TCCTCCGGCAGCAGTCGAGGCCCCTCAAGCAGACCACGCTAGAGACCCTG
CGCGCCTTGATTGTGCTGGGCCTGCTGTTGGACCGCCTGGGCAACGAGAT
GACCAGGATGGCCACCCTCAAGGCGCTGGCCGCAGTATCGGTCAGCCCCC
TCAAGGTGGACCTGAAGCCCATCCTGCCCTCCGCCACGGAGGAGCTGGCG
CAGTTCCTCCGGCAGCAGTCGAGGCCCCTCAAGCAGACCACGCTAGAGAC
CCTGCGCGCCTTGATT
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