mRNA_E-fasciculatus_F_contig12741.2086.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12741.2086.1
Unique NamemRNA_E-fasciculatus_F_contig12741.2086.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: D7FZZ0_ECTSI (2'-phosphotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ0_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 7.930e-86
Identity = 138/150 (92.00%), Postives = 140/150 (93.33%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRRSRRRIQATASRNAAAGRSW 450
            QSTVDGGVLF EAL  HTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVF+DVMYRAAR SQRRPRG K GGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRRSRR+IQATA  N AAGR W
Sbjct:  379 QSTVDGGVLFEEALSQHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFRDVMYRAARQSQRRPRGGKVGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRRSRRQIQATAPWNTAAGRRW 528
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A6H5L3C1_9PHAE (2'-phosphotransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C1_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 7.570e-83
Identity = 135/150 (90.00%), Postives = 138/150 (92.00%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRRSRRRIQATASRNAAAGRSW 450
            QSTVDGGVLF EAL  HTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVF+D MYRA R SQRRPRG K   MPAMLSALGLVLEGRHHSGLDDCRNIARIAI+LCRRSRR+IQATA RNAAAGR W
Sbjct:  421 QSTVDGGVLFEEALSQHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFRDEMYRANRQSQRRPRGGKLSDMPAMLSALGLVLEGRHHSGLDDCRNIARIAIQLCRRSRRQIQATAPRNAAAGRRW 570
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A1X7VTQ4_AMPQE (Exonuclease domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTQ4_AMPQE)

HSP 1 Score: 116 bits (291), Expect = 2.670e-26
Identity = 65/130 (50.00%), Postives = 74/130 (56.92%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCR 390
            QS VDG     E L+    +L  N  L    R C FVTCG+WDLKTM+P QCK  D PVP +F SW NIK VF+            R  G KA GMP ML    + LEGRHHSG+DD RNIA+I   L R
Sbjct:   78 QSQVDGQPTLPEVLRSFHSWLETNGFLEPSVRFC-FVTCGDWDLKTMLPGQCKYFDWPVPEYFRSWMNIKFVFQ------------RLTGVKAKGMPHMLEYFKIPLEGRHHSGIDDSRNIAKILTRLAR 194
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: UPI0013905D37 (ERI1 exoribonuclease 3 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905D37)

HSP 1 Score: 113 bits (282), Expect = 4.230e-25
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRR 393
            Q  V+G       LQ   +++  N  L     SC FVTCG+WDLKTM+P QCK ++ PVP +F  W NIK+V+ DVM + ++            GMP ML  LGL L GRHHSG+DD RNI +I + L R+
Sbjct:   78 QDMVEGKPDLQTTLQTFHDWMGENGLLDSGLSSC-FVTCGDWDLKTMLPLQCKHLNIPVPTYFRKWINIKKVYSDVMGKQSKI-----------GMPGMLHGLGLELVGRHHSGIDDARNITKILVALARK 196
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A7S4QS23_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QS23_9DINO)

HSP 1 Score: 110 bits (274), Expect = 5.810e-25
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   94 RSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCR 390
            RSC+FVTCG+WDLKTM+  QC+L    VP  F  W NIK  F+       R +Q R   + AG MPAML ALGL L+GRHH GLDDCRNIARI  EL R
Sbjct:    7 RSCVFVTCGDWDLKTMISEQCQLSGQHVPARFRRWVNIKNAFR-------RLTQSR---SAAGSMPAMLGALGLELQGRHHCGLDDCRNIARILGELLR 95
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A7S3Y172_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y172_HETAK)

HSP 1 Score: 114 bits (286), Expect = 5.820e-25
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQ-ERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCR 390
            Q  VD   +F EA +LH +++     LP Q + + LFVTCG+WDL  M+P+QC+L +  +P +   W NIK++F            +R    K+ GM  ML   GL LEGRHHSG+DDCRNIAR+ I+LC+
Sbjct:  137 QEWVDQAPIFIEAFELHRQWMEVQGLLPYQGKNTILFVTCGDWDLMQMLPSQCRLTNTKIPSYLQEWVNIKDIFC-----------QRWNLDKSMGMVGMLRKSGLRLEGRHHSGIDDCRNIARLLIQLCK 256
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A3M7R3B4_BRAPC (ERI1 exoribonuclease 3-like n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7R3B4_BRAPC)

HSP 1 Score: 108 bits (270), Expect = 2.830e-24
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERS----CLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRR 393
            Q  +DG     E L +  E+++ N  L     S     +F+TCG+WDLKTM+P+QCK  +   P +F +W NIK+ F ++             G    GMP ML  L L LEGRHHSG+DDCRNIA+IA E+ +R
Sbjct:    8 QEMIDGKPSITECLHMADEWIKSNKDLTLDSESNPINFIFLTCGDWDLKTMLPSQCKFFNIKYPNYFTTWINIKKSFAELT------------GHFPKGMPTMLQMLNLNLEGRHHSGIDDCRNIAKIAKEMAQR 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A074ZY16_9TREM (Exonuclease domain-containing protein n=4 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZY16_9TREM)

HSP 1 Score: 108 bits (270), Expect = 3.300e-23
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIEL 384
            Q  VD      E LQL  E+L +   L G E +  FVTCG+WDL+TM+P+QC+ +  PVP +F  W NIK+ F+DV            RG     +P ML+ L L L+GRHHSG+DD RNIA +  +L
Sbjct:  102 QDMVDNQPRLEEVLQLFDEWLVKEK-LTGTENTFSFVTCGDWDLRTMLPSQCRELGIPVPHYFKQWINIKQTFQDV------------RGLFPHSLPHMLADLNLPLQGRHHSGIDDARNIATVLCQL 216
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A401S970_CHIPU (Exonuclease domain-containing protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401S970_CHIPU)

HSP 1 Score: 104 bits (259), Expect = 3.530e-22
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRR 393
            QS VDG     EALQ+  +++R+   L  +  S +FVTCG+WDLKTM+P QC+L+  PVP +F  W N+K+ +   M          P+     G+P M+  L L   G+ HSG+DDC+NIA I  EL RR
Sbjct:   58 QSMVDGKPTLQEALQMVDDWMRKEGLLDPKVNS-IFVTCGDWDLKTMLPGQCQLLGLPVPDYFKKWINLKKAYSFAM-------GDYPKS----GLPFMIKGLNLQHIGKLHSGIDDCKNIANIMKELARR 176
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Match: A0A8J4WLE5_9TREM (Exonuclease domain-containing protein n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4WLE5_9TREM)

HSP 1 Score: 104 bits (260), Expect = 5.600e-22
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 1 
Query:    1 QSTVDGGVLFAEALQLHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRR 393
            Q  V+      + L+L  E+L +     G  +S  FVTCG+WDLKTM+P+QC+ +   VP +F  W N+K+V++DVM            G    GM  MLS LGL   GRHHSG+DD RNIA I  EL RR
Sbjct:   85 QDMVEYQPCLEDVLKLFDEYLIQEGLTDGG-KSFAFVTCGDWDLKTMLPSQCRHLGISVPSYFRQWINLKQVYRDVM------------GQFPFGMLDMLSGLGLPHRGRHHSGIDDARNIANILCELIRR 202
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12741.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZZ0_ECTSI7.930e-8692.002'-phosphotransferase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L3C1_9PHAE7.570e-8390.002'-phosphotransferase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A1X7VTQ4_AMPQE2.670e-2650.00Exonuclease domain-containing protein n=1 Tax=Amph... [more]
UPI0013905D374.230e-2545.04ERI1 exoribonuclease 3 n=1 Tax=Nematostella vecten... [more]
A0A7S4QS23_9DINO5.810e-2558.59Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S3Y172_HETAK5.820e-2544.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3M7R3B4_BRAPC2.830e-2442.22ERI1 exoribonuclease 3-like n=1 Tax=Brachionus pli... [more]
A0A074ZY16_9TREM3.300e-2344.53Exonuclease domain-containing protein n=4 Tax=Opis... [more]
A0A401S970_CHIPU3.530e-2242.75Exonuclease domain-containing protein n=1 Tax=Chil... [more]
A0A8J4WLE5_9TREM5.600e-2244.27Exonuclease domain-containing protein n=1 Tax=Para... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12741contigE-fasciculatus_F_contig12741:562..3706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue1.9e-47
Seed eggNOG ortholog2880.D7FZZ0
Preferred nameERI3
KEGG koko:K03037,ko:K05544,ko:K08876,ko:K10669,ko:K14007,ko:K18416,ko:K18418,ko:K20407
KEGG Pathwayko03050,ko04141,ko04150,ko05169,map03050,map04141,map04150,map05169
KEGG ModuleM00341,M00404
GOsGO:0000215,GO:0000394,GO:0001932,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005886,GO:0006139,GO:0006259,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0031047,GO:0031323,GO:0031399,GO:0032268,GO:0034470,GO:0034641,GO:0034660,GO:0035194,GO:0040029,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0046483,GO:0048519,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051252,GO:0051338,GO:0051604,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0065009,GO:0070920,GO:0071704,GO:0071944,GO:0080090,GO:0090065,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097428,GO:0106035,GO:0140098,GO:0140101,GO:1900368,GO:1901360,GO:1901564
EggNOG free text desc.tRNA 2'-phosphotransferase activity
EggNOG OGsCOG1859@1,COG5018@1,KOG0542@2759,KOG2278@2759
EC1.3.1.89,2.7.1.160
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03016,ko03019,ko03036,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1695
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12741.2086.1prot_E-fasciculatus_F_contig12741.2086.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12741 1157..2464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.5231166-UTR-E-fasciculatus_F_contig12741:561..6791622927781.5231166-UTR-E-fasciculatus_F_contig12741:561..679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12741 562..679 +
1695995691.4305785-UTR-E-fasciculatus_F_contig12741:561..6791695995691.4305785-UTR-E-fasciculatus_F_contig12741:561..679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12741 562..679 +
1622927781.5826976-UTR-E-fasciculatus_F_contig12741:1136..11561622927781.5826976-UTR-E-fasciculatus_F_contig12741:1136..1156Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12741 1137..1156 +
1695995691.445958-UTR-E-fasciculatus_F_contig12741:1136..11561695995691.445958-UTR-E-fasciculatus_F_contig12741:1136..1156Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12741 1137..1156 +
1622927781.6325529-UTR-E-fasciculatus_F_contig12741:2464..37061622927781.6325529-UTR-E-fasciculatus_F_contig12741:2464..3706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12741 2465..3706 +
1695995691.4811351-UTR-E-fasciculatus_F_contig12741:2464..37061695995691.4811351-UTR-E-fasciculatus_F_contig12741:2464..3706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12741 2465..3706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.5930438-CDS-E-fasciculatus_F_contig12741:1156..12401622927781.5930438-CDS-E-fasciculatus_F_contig12741:1156..1240Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12741 1157..1240 +
1695995691.4543426-CDS-E-fasciculatus_F_contig12741:1156..12401695995691.4543426-CDS-E-fasciculatus_F_contig12741:1156..1240Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12741 1157..1240 +
1622927781.603039-CDS-E-fasciculatus_F_contig12741:1561..17371622927781.603039-CDS-E-fasciculatus_F_contig12741:1561..1737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12741 1562..1737 +
1695995691.4630754-CDS-E-fasciculatus_F_contig12741:1561..17371695995691.4630754-CDS-E-fasciculatus_F_contig12741:1561..1737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12741 1562..1737 +
1622927781.6190403-CDS-E-fasciculatus_F_contig12741:2409..24641622927781.6190403-CDS-E-fasciculatus_F_contig12741:2409..2464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12741 2410..2464 +
1695995691.473445-CDS-E-fasciculatus_F_contig12741:2409..24641695995691.473445-CDS-E-fasciculatus_F_contig12741:2409..2464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12741 2410..2464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12741.2086.1

>prot_E-fasciculatus_F_contig12741.2086.1 ID=prot_E-fasciculatus_F_contig12741.2086.1|Name=mRNA_E-fasciculatus_F_contig12741.2086.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MMPAQCKLIDAPVPPHFNSWANIKEVFKDVMYRAARHSQRRPRGAKAGGM
PAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRRSRRRIQATASRNAAA
GRSW*
back to top

mRNA from alignment at E-fasciculatus_F_contig12741:562..3706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12741.2086.1 ID=mRNA_E-fasciculatus_F_contig12741.2086.1|Name=mRNA_E-fasciculatus_F_contig12741.2086.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3145bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12741:562..3706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTCCACCGTCGACGGGGGAGTTTTGTTTGCGGAGGCGCTTCAGCTTCA
TACGGAGTTCTTGCGGCGCAACTCGTGCCTTCCCGGCCAAGAGCGGTCGT
GCCTCTTCGTAACATGCGGTGAGACCTGAGGCCTAGTACGAGCCTCGTGG
GTAGACGCCTGCCCACGGGAAGGTGTTGTAATTTATGCCGTATACGCGAC
ACAAGGTAATTCCCCCACGCGAGATTGCACACACCCCACACAATACCACA
CCCGATGGTATTTTGTTTTGGGGAAGTTAGGGTCCAAAATTTGTACCAGG
CGACGTAAATACCACCCCCTCCACCCCCCCGGTTATGTAGTGTTGCGGAA
GACAAAATGGTATATAACCGGGATGTGCTGAGATGAGGCAGATCACCGTT
ACGTGCACAGCAATAAAATAAGACGATGCATACATACGCGATAGCACTAA
AGTCAGGTTACGTGTTCGTTAGACTATTTAGTGCGTCTCTTCATCGCTAC
ACCTGTACCTGTCTCCATCTGCCTCTGGTGATATCGATGGCGGTGCTGCT
GCAACACCACGCTTGCAATGATTAGGCAACTGGGACCTCAAGACCATGAT
GCCCGCGCAGTGCAAGCTGATCGACGCCCCGGTGCCTCCCCACTTTAACA
GCTGGGCCAACATCAAGGAGGTCTTCAAGGTGAGACCACGGCAACCATTC
ATACGTGCAAAGGCAGTGCCATGGCAAAAAAAACACACTCGGGCTTTGTC
CTCCCGAAGTACTCCTACAGTGCGGCTGTTGGCCTGCGTGTACCGGGAGA
TCAAGGAACTCCCCGGGGAAAAGAGCACACGACATGATTTCGTTGTTGCT
GTCTCCCTTAATATCATAACCTGCCCTCGGCGGTGTTCACGCCTGGTTTC
TTCCGCGCGCACGAGTACCGCCCCACAACGTCACACGCCACCCCAGCCAT
AGACCTGATTCTACAGCTGGCTCTTGCCTCCCGTCCGTTGTTGGCACCAG
GACGTGATGTACCGAGCCGCCCGGCACTCTCAACGGCGGCCCCGTGGTGC
GAAGGCGGGCGGCATGCCGGCAATGCTCTCTGCCCTGGGCTTGGTTCTGG
AAGGGCGGCACCACAGCGGGTTGGACGACTGCAGGAACATCGCTAGGATA
GCGATAGAGCTGTGTCGACGAAGCAGGTAACAGCGATATTTTGGTCGACA
TTTGAAGTTGACTAACTTGCGGGATTACACACGCGTAGGCGCTGCTCGAA
GACGACAGCACCTGTACGCCAAGAGGCATCATGTGTATTGAATATTGCTG
GTAACGGCCGTGAAAAAAAACGCCTCTGAAAGGGAGANNNNNNNNNNTGT
ATTGAATATTGCTGGTAACGGCCGTGTGCTTCGCCGTCTTGTGTGCCTCT
GGTTTGTTGGGCGTTCGTGGCGTGAGATTTATTTTCCGCCACACCTTCTC
AGGCTTTCTTTGGATTTCACGGCATTTTTTCTCAAGGTGTGCAGCGTCAA
TGGCCAAGTGGTCCCAGGAGTTAAGTGGACGAGGACCCTCCCCGCCCCGC
GCGCCTCCACCTAGACTAAGCCTCATAAAATGGGAGCTATCAAAATGTGA
TATTGGTTCCTGACGAACGTCTTTTAGCCTCGGTTACTCCGTCCCACTAC
CTCGTTGCCTACCTGTTGACCACAGGGTATTCTCGACCCCCCACCCTCCG
ACGTACCTGTAATTTGTGGATATGCGAGGGCCCATGGTGTGATATGTGAT
GTGACAACCGTCCGCGTGGTATTGAGCGTCCTCTCTCCGCCTCCTCTCAC
CGTACGGGCGCCGATGCATTTGTTGTCGTTGCTGCTGCCGGCATGCAGGC
GCCGGATTCAAGCAACCGCTTCCAGGAATGCCGCTGCTGGCCGCAGTTGG
TAGCACTATAACATAGAAACACCATACAATACGATTGGGTTTAAGGCTCC
AACAGCCGTGCCTGCATGCAGTCTTGTCCGCTTTGGACTTCGAAAGAAGT
TTTGACGGCCACGGAACTACGGTGCAAGTGTAACGCAGGTACACTGTCAC
AGGACGTACTTTATACCCTAGTAGGCGGGTTAGCTTTCGCCGACAAATGT
GGAACGGACTATGTACGTACGCTTTCGACTGAAGGCTTCTGGCCGTGCGG
ATTTGGTGAATGAACAGGTCGTATGCATACACCAGGTTCTTTTTCAGGTG
TAGACTATTGTCTAATAAGGTGTGGTGATGACATTGCGTTGAGGGAAACG
GTCAAGATAATTAACATGCTTGTAGCTGTAGTGTAGTAGTGTGGGTGTGC
TTCCCTGTGGGGTGGCGTGAGACCGGCCAGCGTGTTTTGGTGAGACGGCT
CATCTCGCCAACTACCCACCATGCACTCGATTAACAGGAGTTTCGTGAGG
TTGGACTTGTGTTTGGTTTTTTTTGTGTGTATTTTTCTCGTTTTCGGGTG
TCAAGACTCTAGTCTACAAATATAAACCTTGTGTGTGTGTTTGTATTTGG
TTTTGGTTTTGTTGTGGGTATTTTTTAGTTTTCGGTTTTGGGGAGGCAAC
ATCATAGATGCAGAGCTTTCGTGAGCTAGATTATCATGACCTCCACCTAG
CGTGAGGTCAGTCGAGATACAGGAAGGACATTCATTCTTCGAAGGTGATG
AGTTTAGGAGGCAGAGAGAGGTCGCTACAGTATCTACTGTAGATATGTGT
TGGCAGAAACGTACAATACTTCCGTTCCTTCCGCCTTGTTCGAAGGTCAG
ATTACTGTAGTAAAAGAGTCTGGTGAGAAGAGGCGTGCTTGTTGCTTGCT
ACACTATACTTTCGTTCTAGACATCTAGACATGCTAGACATGTGTGCCCT
TTTTAGGGCGGTAGTTGGCTTGTGGCCACGGAAGAAGGCGTCTGCGTCAG
TCGGACCCATTCGTAGAACGGATACAATTGTATTAGAAGATAATGAGCGG
AGATCGGAACAGTTTTTAACCAGACAACAACAACACGATTGTATGCGTAT
AATAGCCCGGGGATAGCCCCGGCCTCACCTGAAGCCCTTTGTCTTTCGTT
TATCGGGGATGTATAGGGTAGGTAGGGTGTGGTGGAGGATGATGATAAAA
ATAAAAGGAGATGGTATGATGAAGGAAGAAGGAAGGAAATAAGGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12741:562..3706+

>mRNA_E-fasciculatus_F_contig12741.2086.1 ID=mRNA_E-fasciculatus_F_contig12741.2086.1|Name=mRNA_E-fasciculatus_F_contig12741.2086.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12741:562..3706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGCCCGCGCAGTGCAAGCTGATCGACGCCCCGGTGCCTCCCCACTT
TAACAGCTGGGCCAACATCAAGGAGGTCTTCAAGATGATGCCCGCGCAGT
GCAAGCTGATCGACGCCCCGGTGCCTCCCCACTTTAACAGCTGGGCCAAC
ATCAAGGAGGTCTTCAAGGACGTGATGTACCGAGCCGCCCGGCACTCTCA
ACGGCGGCCCCGTGGTGCGAAGGCGGGCGGCATGCCGGCAATGCTCTCTG
CCCTGGGCTTGGTTCTGGAAGGGCGGCACCACAGCGGGTTGGACGACTGC
AGGAACATCGCTAGGATAGCGATAGAGCTGTGTCGACGAAGCAGGACGTG
ATGTACCGAGCCGCCCGGCACTCTCAACGGCGGCCCCGTGGTGCGAAGGC
GGGCGGCATGCCGGCAATGCTCTCTGCCCTGGGCTTGGTTCTGGAAGGGC
GGCACCACAGCGGGTTGGACGACTGCAGGAACATCGCTAGGATAGCGATA
GAGCTGTGTCGACGAAGCAGGCGCCGGATTCAAGCAACCGCTTCCAGGAA
TGCCGCTGCTGGCCGCAGTTGGTAGGCGCCGGATTCAAGCAACCGCTTCC
AGGAATGCCGCTGCTGGCCGCAGTTGGTAG
back to top