mRNA_E-fasciculatus_F_contig12733.2082.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12733.2082.1
Unique NamemRNA_E-fasciculatus_F_contig12733.2082.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12733.2082.1 vs. uniprot
Match: D8LLA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA1_ECTSI)

HSP 1 Score: 435 bits (1119), Expect = 2.810e-147
Identity = 254/346 (73.41%), Postives = 274/346 (79.19%), Query Frame = 2 
Query:  419 RPRAKGLMPSVGNHLELAARAILEGIKSLTSKIFVQAAMPLVLIDCKESDFRGLAMSDGSSTGPRLGMHPSMRPEAIVQRWSNRQVHSKRTAGQLLHMAQTLAPSRRLAIQRAFAVIRREACLRKVGGESALVRLVARLWVVIMLESGGSGGSTNDHQGAMGEQLMGSVVAKTXXXXXXXXXXXADQEPRGKNSSRQKKVEIKGGDGCGKANPAAKGISGKNGRIRGSSSSCGEATQRTKARNSGSSLRQVADEGGSDGSANGDARTCGAFGASNNGLGRRSSSDKEEQRQAAETRLKEEAGQQKLKATMVGPEQRQQQQIGVSETFDGRAENGSAVGEATGAAMS 1456
            RPRA GLMPS+GN LELAARAIL+GIKSLTSK+FVQAAMPLVLIDCKESDFRGL MSDG+S GPRL MHP MRPEAIVQRWSNRQ+H+KRT GQLLH+AQTLAP                 CLR++G ESALVRLV+RLW V MLESGGS  STND + AMG+QLMGSV+AKT           A+QEP GKNSSRQKKVEI+G DGC KAN AAKG   KNGRIRGSSSSCGEAT+RTKAR SGSSLR+VAD+GGSDGSAN DA   G FGASN GLG RSS DKEEQR+  E  LKEEAGQQ LK TMV PEQ QQQ+IGVSE F GR ENGSA GE TG AMS
Sbjct:   11 RPRAMGLMPSLGNRLELAARAILDGIKSLTSKLFVQAAMPLVLIDCKESDFRGLTMSDGTSNGPRLRMHPPMRPEAIVQRWSNRQIHTKRTVGQLLHVAQTLAPXXXXXXXXXXXXXXXXXCLRRIGSESALVRLVSRLWEV-MLESGGS--STNDCRDAMGKQLMGSVLAKT-----------ANQEPAGKNSSRQKKVEIEGSDGCSKANRAAKGTLEKNGRIRGSSSSCGEATRRTKARGSGSSLRRVADQGGSDGSANSDAIMRGTFGASNTGLGTRSSGDKEEQRETTEIHLKEEAGQQGLKVTMVTPEQNQQQKIGVSENFGGRVENGSAFGEVTGDAMS 342
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BLAST of mRNA_E-fasciculatus_F_contig12733.2082.1 vs. uniprot
Match: D8LLA2_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.340e-8
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 2 
Query: 1403 GRAENGSAVGEATGAAMSHQKTECKTRAKVRPEPAKENRSTAPAGKRAEANIDLLDAEISLTG 1591
            GR  +G  VGE TGA MS QKTE +TR KVRPE A+ENRS A AGK+  A+  LLDAE+SL G
Sbjct:  127 GRVNSGLPVGEVTGAVMSRQKTEYRTRVKVRPERAEENRSAAAAGKQQAAHRHLLDAEVSLGG 189
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12733.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLA1_ECTSI2.810e-14773.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLA2_ECTSI2.340e-863.49N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12733contigE-fasciculatus_F_contig12733:3..3085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_001850.1
Exons3
Model size1607
Cds size1314
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12733.2082.1prot_E-fasciculatus_F_contig12733.2082.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12733 3..2793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.7967327-CDS-E-fasciculatus_F_contig12733:2..11071622927780.7967327-CDS-E-fasciculatus_F_contig12733:2..1107Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12733 3..1107 -
1695995691.036957-CDS-E-fasciculatus_F_contig12733:2..11071695995691.036957-CDS-E-fasciculatus_F_contig12733:2..1107Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12733 3..1107 -
1622927780.8221443-CDS-E-fasciculatus_F_contig12733:1439..15341622927780.8221443-CDS-E-fasciculatus_F_contig12733:1439..1534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12733 1440..1534 -
1695995691.0476441-CDS-E-fasciculatus_F_contig12733:1439..15341695995691.0476441-CDS-E-fasciculatus_F_contig12733:1439..1534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12733 1440..1534 -
1622927780.8393-CDS-E-fasciculatus_F_contig12733:2679..27931622927780.8393-CDS-E-fasciculatus_F_contig12733:2679..2793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12733 2680..2793 -
1695995691.0580525-CDS-E-fasciculatus_F_contig12733:2679..27931695995691.0580525-CDS-E-fasciculatus_F_contig12733:2679..2793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12733 2680..2793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.8569992-UTR-E-fasciculatus_F_contig12733:2793..30851622927780.8569992-UTR-E-fasciculatus_F_contig12733:2793..3085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12733 2794..3085 -
1695995691.0681403-UTR-E-fasciculatus_F_contig12733:2793..30851695995691.0681403-UTR-E-fasciculatus_F_contig12733:2793..3085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12733 2794..3085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12733.2082.1

>prot_E-fasciculatus_F_contig12733.2082.1 ID=prot_E-fasciculatus_F_contig12733.2082.1|Name=mRNA_E-fasciculatus_F_contig12733.2082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=438bp
MPRTSRRTTTCVVANTREIMIGSGGRMVGPTAKTTGPESTVTRPRAKGLM
PSVGNHLELAARAILEGIKSLTSKIFVQAAMPLVLIDCKESDFRGLAMSD
GSSTGPRLGMHPSMRPEAIVQRWSNRQVHSKRTAGQLLHMAQTLAPSRRL
AIQRAFAVIRREACLRKVGGESALVRLVARLWVVIMLESGGSGGSTNDHQ
GAMGEQLMGSVVAKTEQPMGSVLAKTADQEPRGKNSSRQKKVEIKGGDGC
GKANPAAKGISGKNGRIRGSSSSCGEATQRTKARNSGSSLRQVADEGGSD
GSANGDARTCGAFGASNNGLGRRSSSDKEEQRQAAETRLKEEAGQQKLKA
TMVGPEQRQQQQIGVSETFDGRAENGSAVGEATGAAMSHQKTECKTRAKV
RPEPAKENRSTAPAGKRAEANIDLLDAEISLTGTVSGL
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mRNA from alignment at E-fasciculatus_F_contig12733:3..3085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12733.2082.1 ID=mRNA_E-fasciculatus_F_contig12733.2082.1|Name=mRNA_E-fasciculatus_F_contig12733.2082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3083bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12733:3..3085- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAATGTTATCGAGCGGATAATTACGCCCGAAATATGTACCTCGGTACACG
TAGGGCCGAGCTCCATTCAAATGCGGTACATAGATCGAATGGCTGTCTGT
CTGTGGAAACTCGGGCAGGCGGTGAAAAAACCGTTACACCGACTCAACGA
TCGCGACCAACCTGACAGTACCGCCAACCGCCAACCCGCCGACACAACTC
GTTTTCTTTCCATCAGGCGAACACAACGCTTCTCGTCCTTTCGGCATAGT
TGTTGATACAAGCGGGAAGTCAGACAGCGCACACTCAGAACCATGCCGAG
AACGTCGAGACGTACTACTACATGTGTTGTGGCGAACACTCGTGAAATTA
TGATCGGGTCTGGAGGACGAATGGTCGGGCCAACGGCGAAGACAACCGGG
CCTGAGGTAGGTGTGTTTGGTTTTGGGGGCCTTTTTTGGCGAGAAAACGA
ACTCTCTCTGGGATTGTGGTTGGTTACAACTACGTAGACCGTGGCCCGAA
AGCGACGCACGCACGGACACTCTCGCGCTTCGTGTGTAGATAGATGATGC
AAACAAAAGGTGTACACACGGTATTACACCTCATCGTCAGTACAACATCA
TCATCACTTTACAGATACAAAACGCCGCACAGCCATTATTTGGCACTTCA
TTTCTGCTGTTGTTCATGTTCTCGTATGCTGCTGTTGGGAAGGAGATGTG
CCGTAATCTTTTGCTGGTGCAGGGCGTTGTGCCGGACCCGACGTTCACAA
GGCCACTCTCGGTTCGGCACGACGCTAGCCTCTACAAAGTGTCCCATGTC
ATACATTTACCACAAGAGCATGAACGTTGACCAATCTCACCGTCTCTGGT
GTAGTCTAAAGGTCTATTGTCGGGTTATAGCTGTGTCATCGTTGTTATCT
TCACGTCAAAATCCTCTCTGGCGTATGTATGTATGTATGTCCACGATGTT
CTCCTCCGCACTCGATGTGCATACTGCTGCCCTGTGCTGTTGTCTTGGGT
ACCCAAACCAAGGACCCACTTTGTTTTGGAGCCATCGATAAACAGCCGCT
GTAACTACTGGCTGAGTCCGCTGGGTTGGACTCAGGACCCGAGTTTAGGC
GATGGTTTCTAACGTTCCAACGATCCTTCTTTGGGGATGTCCTTAGAAAT
GTTGTTCTTGTTATGCATACCTTGACAAAACAATATTGGCCTGGCCTCTA
TCCAATACCAACTCAAGCAAGGTTCCAGCGTCACAAGCTTATATCCTCCA
TACAGCCGCTACAAATGAAACCCGACGAAAATCGTTTACTTACTTGCCTG
AACTTGTCATTTAGGGACTTCCATTTTTTCGTGGTGGAATCTGTCCGGGT
CTTGTACAGGTACCAGACATCACACCATGAAGAAGTTGTAGCCTGTTGTA
GTCACGGAAGGTCGCTGTTCCTCGAAAAATGTATGGAAGAAGAGGTATGC
GACGAGGCCAGAAACGATTTTTTAGTATGCATATGAAGAAAACAACCCCG
TAACTATGCATGTTGATTTTGCACCCGCTACCGTGTTACAAATACAAGCA
GTCGACCGTGACACGACCCCGGGCAAAGGGGCTGATGCCGTCCGTGGGCA
ACCACTTAGAACTAGCAGCCAGAGCCATTCTCGAGGGCATCAAGAGGTGA
GGGTCTGGTTCTTCCCGTTACACTGAAAGGCGACGGAAAGGGGGCCCTTA
AACAGGTCGTACGTTGTCAGTGCTGAATTCTCAGGGCAAGACACAGCTGC
AAGCACTTTTGGGGAACATATTCGGAGCGTTTTCAGGGACAGTATATACG
ACCCCGTAAACAACGTCGACATTCTTGACTGTGTAGATAGTAGCAACACG
TTTCTTGTTTTGAGCGAATTCCATGCAAGCATATATATTTCTCAAGCGTC
CTCCCCCTGTTGGGCCCCTGCCCGCTCGTCCGCCTGTTCGTCCTTCCGGA
CACAAAATAACCCAAACAACGATGATAGCCTTACCAGCAAGATTTTCGTG
CAAGCTGCGATGCCTCTGGTGCTGATCGACTGCAAAGAGTCAGACTTCCG
CGGACTAGCTATGTCTGACGGCAGCAGCACTGGTCCGCGCCTCGGGATGC
ACCCGTCAATGCGGCCAGAGGCAATCGTGCAGCGGTGGTCTAACCGCCAG
GTCCACAGCAAGCGCACGGCTGGGCAGCTCCTCCACATGGCGCAGACACT
TGCACCCTCACGGCGCCTCGCGATCCAGCGCGCATTTGCGGTCATCCGCC
GCGAAGCCTGTTTGCGGAAGGTCGGGGGCGAGAGCGCGTTGGTGAGACTG
GTGGCAAGGCTGTGGGTGGTCATCATGTTGGAGAGTGGCGGTAGTGGTGG
CAGCACGAATGACCACCAGGGTGCGATGGGGGAGCAGCTCATGGGCAGTG
TTGTTGCCAAGACCGAACAACCCATGGGCAGTGTTCTTGCCAAGACAGCA
GATCAGGAGCCGAGGGGTAAGAATTCGTCTAGACAAAAGAAGGTCGAGAT
CAAGGGGGGCGACGGTTGTGGCAAGGCCAACCCGGCAGCTAAGGGAATCT
CGGGGAAGAATGGCCGCATCCGTGGCAGCAGTAGCTCCTGTGGCGAGGCC
ACACAGCGGACGAAGGCGCGCAATAGTGGGTCAAGTCTGCGGCAGGTGGC
TGATGAAGGCGGAAGCGACGGTAGCGCCAACGGTGACGCGAGAACGTGTG
GAGCGTTCGGGGCGAGCAACAATGGCCTTGGCAGACGCAGCTCCAGTGAC
AAGGAGGAGCAGAGGCAGGCAGCAGAGACTCGTCTGAAGGAGGAGGCAGG
CCAGCAAAAACTGAAAGCAACGATGGTTGGGCCAGAGCAGAGGCAGCAAC
AGCAGATTGGCGTGAGCGAAACCTTCGATGGTCGGGCAGAGAACGGTTCG
GCCGTTGGGGAGGCGACGGGTGCCGCGATGAGTCACCAGAAGACCGAGTG
CAAGACGAGGGCAAAGGTCAGACCAGAACCGGCCAAGGAAAACAGGAGCA
CTGCCCCGGCCGGGAAACGAGCTGAAGCAAACATCGACCTCCTGGACGCG
GAGATCAGTCTGACCGGTACTGTCAGCGGTCTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12733:3..3085-

>mRNA_E-fasciculatus_F_contig12733.2082.1 ID=mRNA_E-fasciculatus_F_contig12733.2082.1|Name=mRNA_E-fasciculatus_F_contig12733.2082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2628bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12733:3..3085- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGAGAACGTCGAGACGTACTACTACATGTGTTGTGGCGAACACTCG
TGAAATTATGATCGGGTCTGGAGGACGAATGGTCGGGCCAACGGCGAAGA
CAACCGGGCCTGAGATGCCGAGAACGTCGAGACGTACTACTACATGTGTT
GTGGCGAACACTCGTGAAATTATGATCGGGTCTGGAGGACGAATGGTCGG
GCCAACGGCGAAGACAACCGGGCCTGAGTCGACCGTGACACGACCCCGGG
CAAAGGGGCTGATGCCGTCCGTGGGCAACCACTTAGAACTAGCAGCCAGA
GCCATTCTCGAGGGCATCAAGAGTCGACCGTGACACGACCCCGGGCAAAG
GGGCTGATGCCGTCCGTGGGCAACCACTTAGAACTAGCAGCCAGAGCCAT
TCTCGAGGGCATCAAGAGCCTTACCAGCAAGATTTTCGTGCAAGCTGCGA
TGCCTCTGGTGCTGATCGACTGCAAAGAGTCAGACTTCCGCGGACTAGCT
ATGTCTGACGGCAGCAGCACTGGTCCGCGCCTCGGGATGCACCCGTCAAT
GCGGCCAGAGGCAATCGTGCAGCGGTGGTCTAACCGCCAGGTCCACAGCA
AGCGCACGGCTGGGCAGCTCCTCCACATGGCGCAGACACTTGCACCCTCA
CGGCGCCTCGCGATCCAGCGCGCATTTGCGGTCATCCGCCGCGAAGCCTG
TTTGCGGAAGGTCGGGGGCGAGAGCGCGTTGGTGAGACTGGTGGCAAGGC
TGTGGGTGGTCATCATGTTGGAGAGTGGCGGTAGTGGTGGCAGCACGAAT
GACCACCAGGGTGCGATGGGGGAGCAGCTCATGGGCAGTGTTGTTGCCAA
GACCGAACAACCCATGGGCAGTGTTCTTGCCAAGACAGCAGATCAGGAGC
CGAGGGGTAAGAATTCGTCTAGACAAAAGAAGGTCGAGATCAAGGGGGGC
GACGGTTGTGGCAAGGCCAACCCGGCAGCTAAGGGAATCTCGGGGAAGAA
TGGCCGCATCCGTGGCAGCAGTAGCTCCTGTGGCGAGGCCACACAGCGGA
CGAAGGCGCGCAATAGTGGGTCAAGTCTGCGGCAGGTGGCTGATGAAGGC
GGAAGCGACGGTAGCGCCAACGGTGACGCGAGAACGTGTGGAGCGTTCGG
GGCGAGCAACAATGGCCTTGGCAGACGCAGCTCCAGTGACAAGGAGGAGC
AGAGGCAGGCAGCAGAGACTCGTCTGAAGGAGGAGGCAGGCCAGCAAAAA
CTGAAAGCAACGATGGTTGGGCCAGAGCAGAGGCAGCAACAGCAGATTGG
CGTGAGCGAAACCTTCGATGGTCGGGCAGAGAACGGTTCGGCCGTTGGGG
AGGCGACGGGTGCCGCGATGAGTCACCAGAAGACCGAGTGCAAGACGAGG
GCAAAGGTCAGACCAGAACCGGCCAAGGAAAACAGGAGCACTGCCCCGGC
CGGGAAACGAGCTGAAGCAAACATCGACCTCCTGGACGCGGAGATCAGTC
TGACCGGTACTGTCAGCGGTCTACCTTACCAGCAAGATTTTCGTGCAAGC
TGCGATGCCTCTGGTGCTGATCGACTGCAAAGAGTCAGACTTCCGCGGAC
TAGCTATGTCTGACGGCAGCAGCACTGGTCCGCGCCTCGGGATGCACCCG
TCAATGCGGCCAGAGGCAATCGTGCAGCGGTGGTCTAACCGCCAGGTCCA
CAGCAAGCGCACGGCTGGGCAGCTCCTCCACATGGCGCAGACACTTGCAC
CCTCACGGCGCCTCGCGATCCAGCGCGCATTTGCGGTCATCCGCCGCGAA
GCCTGTTTGCGGAAGGTCGGGGGCGAGAGCGCGTTGGTGAGACTGGTGGC
AAGGCTGTGGGTGGTCATCATGTTGGAGAGTGGCGGTAGTGGTGGCAGCA
CGAATGACCACCAGGGTGCGATGGGGGAGCAGCTCATGGGCAGTGTTGTT
GCCAAGACCGAACAACCCATGGGCAGTGTTCTTGCCAAGACAGCAGATCA
GGAGCCGAGGGGTAAGAATTCGTCTAGACAAAAGAAGGTCGAGATCAAGG
GGGGCGACGGTTGTGGCAAGGCCAACCCGGCAGCTAAGGGAATCTCGGGG
AAGAATGGCCGCATCCGTGGCAGCAGTAGCTCCTGTGGCGAGGCCACACA
GCGGACGAAGGCGCGCAATAGTGGGTCAAGTCTGCGGCAGGTGGCTGATG
AAGGCGGAAGCGACGGTAGCGCCAACGGTGACGCGAGAACGTGTGGAGCG
TTCGGGGCGAGCAACAATGGCCTTGGCAGACGCAGCTCCAGTGACAAGGA
GGAGCAGAGGCAGGCAGCAGAGACTCGTCTGAAGGAGGAGGCAGGCCAGC
AAAAACTGAAAGCAACGATGGTTGGGCCAGAGCAGAGGCAGCAACAGCAG
ATTGGCGTGAGCGAAACCTTCGATGGTCGGGCAGAGAACGGTTCGGCCGT
TGGGGAGGCGACGGGTGCCGCGATGAGTCACCAGAAGACCGAGTGCAAGA
CGAGGGCAAAGGTCAGACCAGAACCGGCCAAGGAAAACAGGAGCACTGCC
CCGGCCGGGAAACGAGCTGAAGCAAACATCGACCTCCTGGACGCGGAGAT
CAGTCTGACCGGTACTGTCAGCGGTCTA
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