mRNA_E-fasciculatus_F_contig12731.2081.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12731.2081.1
Unique NamemRNA_E-fasciculatus_F_contig12731.2081.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12731.2081.1 vs. uniprot
Match: D7G442_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G442_ECTSI)

HSP 1 Score: 706 bits (1821), Expect = 3.460e-244
Identity = 436/574 (75.96%), Postives = 456/574 (79.44%), Query Frame = 1 
Query:    1 QGGEKLVIDCNTDLQELFDDPCRGVRKKINITYVARGLNGIVRVSEKDRYLVADIVVGYYSRENFRESKLLEERHSLRKNHRAQASTQQHSSRRDERSGSDSDRDSDSTNGPVENTGNLTVANTDGLCVPCDDHGDGSLEPPLTLKTSMM--VGGAGADPSALEGGGRGRRVPTPAERXXXXXXXXRQAHQEDVRRKEAXXXXXXXRMRADKARRDREVARAVREAEDAERLRLLIEAQEAENNAPVPTRLLRTMQRKAAAAIAAVASGAAAATADGRGVVDGPAKASTTGDRRLPEVSFSQKPTLIEEQSDGGGPEQGGKCLQVSVLGDGDDSPSKTTETATRRPSRKDVGHRLSASTATAALGVDNEEVAALAGEAQNTVAADAPKQGKRKTKSREAGEGGRGRTKAAGRPVAERRNKDDRGALSRLLPGTTAQGGSATAADVFVDASLHERSGNKRTSHTRGHS-SAPQGEVEANLTAASSPPSDVGGVVVGTTGRPRRKPSEERAGEPRAVFTHRASTTLPTDEATGGGEAAGVLVEGGRGGRHGESHQRRASSKGRVGSVLPAQFVNAA 1713
            QGGEKLVIDCNTDLQELFDDPCRGVRKKINITYVARGLNGI+RVSEKDRYLVADIVVGYYSR+NFRESKLL ERH LRK HR Q ST QHS RRDERSGSD  RDSDSTN PVENTG+LTVAN DGLCVP  DH DGSLEPPL+LKTSMM  VGG+G DPSA+EG G G R PT AER  XXXXXX QAHQEDVRRKEAXXXXXX RMRADKARRDREVARA                   EN A VPTRLLRTMQRKA  AIAAVASGA   TADGRGVVD PAKA TT DRR+P V+FS+K  L EE+ DGGGPEQ  K  Q SVLGDGDDSPSKT  TATRR SRK VGH L A+ A AAL  DNEEV ALAGE ++  A D PK+GKRKTKSREA EGGRGRT AAG    ER NK+ RGAL   LPGTTAQ GSA  A    DA L ERSGNKRTSH+RGHS +APQGE EANLTA SSPP DVG  V GTTGRPRRKPSEER GEPRAVF HRAS  LPTDEATG GEAAGVLVEG RG R+GESHQRRAS KGRVGSV P++ VNAA
Sbjct:  374 QGGEKLVIDCNTDLQELFDDPCRGVRKKINITYVARGLNGIIRVSEKDRYLVADIVVGYYSRQNFRESKLLAERHGLRKGHRTQESTHQHS-RRDERSGSDXXRDSDSTNEPVENTGSLTVANADGLCVPRGDHEDGSLEPPLSLKTSMMMVVGGSGVDPSAVEGRGGGSRTPTMAERRRXXXXXXXQAHQEDVRRKEAXXXXXXRRMRADKARRDREVARAXXXXXXXXXXXXXXXXXXXENAAAVPTRLLRTMQRKAVEAIAAVASGAGT-TADGRGVVDEPAKAGTTRDRRVPGVNFSKKTVLEEERRDGGGPEQERKGHQPSVLGDGDDSPSKTNMTATRRRSRKAVGHGLPATHANAALADDNEEVTALAGETRHAFATDEPKKGKRKTKSREASEGGRGRTTAAGHRDVERHNKE-RGALPPPLPGTTAQAGSAAVATAANDA-LRERSGNKRTSHSRGHSRNAPQGEAEANLTAVSSPPKDVG--VGGTTGRPRRKPSEERVGEPRAVFAHRASAILPTDEATGSGEAAGVLVEGARGERNGESHQRRASRKGRVGSVSPSEIVNAA 941
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BLAST of mRNA_E-fasciculatus_F_contig12731.2081.1 vs. uniprot
Match: A0A8J2SKE2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKE2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.300e-6
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 QGGEKLVIDCNTDLQELFDDPCRGVRKKINITYVARGLNGIVRVSEKDR-YLVADIVVGY 177
            QGG +L +D + DL E F DPC G+RKK+ I Y  RG +G  RV E    YL  DI +GY
Sbjct:  587 QGGSRLHLDTDLDLDETFGDPCPGMRKKLVIRYYVRGFHGCTRVDEDPMDYLSTDIQIGY 646
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12731.2081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G442_ECTSI3.460e-24475.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2SKE2_9STRA2.300e-650.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12731contigE-fasciculatus_F_contig12731:1492..3413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score721.8
Seed ortholog evalue2.4e-205
Seed eggNOG ortholog2880.D7G442
EggNOG OGs2EP30@1,2SSCD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1716
Cds size1716
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.7461088-CDS-E-fasciculatus_F_contig12731:1491..31001622927780.7461088-CDS-E-fasciculatus_F_contig12731:1491..3100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12731 1492..3100 -
1695995691.019568-CDS-E-fasciculatus_F_contig12731:1491..31001695995691.019568-CDS-E-fasciculatus_F_contig12731:1491..3100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12731 1492..3100 -
1622927780.7586818-CDS-E-fasciculatus_F_contig12731:3306..34131622927780.7586818-CDS-E-fasciculatus_F_contig12731:3306..3413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12731 3307..3413 -
1695995691.0288284-CDS-E-fasciculatus_F_contig12731:3306..34131695995691.0288284-CDS-E-fasciculatus_F_contig12731:3306..3413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12731 3307..3413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12731.2081.1prot_E-fasciculatus_F_contig12731.2081.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12731 1492..3413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12731.2081.1

>prot_E-fasciculatus_F_contig12731.2081.1 ID=prot_E-fasciculatus_F_contig12731.2081.1|Name=mRNA_E-fasciculatus_F_contig12731.2081.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=572bp
QGGEKLVIDCNTDLQELFDDPCRGVRKKINITYVARGLNGIVRVSEKDRY
LVADIVVGYYSRENFRESKLLEERHSLRKNHRAQASTQQHSSRRDERSGS
DSDRDSDSTNGPVENTGNLTVANTDGLCVPCDDHGDGSLEPPLTLKTSMM
VGGAGADPSALEGGGRGRRVPTPAERRRERQRERRQAHQEDVRRKEAERE
SERRRMRADKARRDREVARAVREAEDAERLRLLIEAQEAENNAPVPTRLL
RTMQRKAAAAIAAVASGAAAATADGRGVVDGPAKASTTGDRRLPEVSFSQ
KPTLIEEQSDGGGPEQGGKCLQVSVLGDGDDSPSKTTETATRRPSRKDVG
HRLSASTATAALGVDNEEVAALAGEAQNTVAADAPKQGKRKTKSREAGEG
GRGRTKAAGRPVAERRNKDDRGALSRLLPGTTAQGGSATAADVFVDASLH
ERSGNKRTSHTRGHSSAPQGEVEANLTAASSPPSDVGGVVVGTTGRPRRK
PSEERAGEPRAVFTHRASTTLPTDEATGGGEAAGVLVEGGRGGRHGESHQ
RRASSKGRVGSVLPAQFVNAA*
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mRNA from alignment at E-fasciculatus_F_contig12731:1492..3413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12731.2081.1 ID=mRNA_E-fasciculatus_F_contig12731.2081.1|Name=mRNA_E-fasciculatus_F_contig12731.2081.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1922bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12731:1492..3413- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGTGGTGAAAAGCTTGTGATCGACTGTAACACCGACCTTCAGGAGCT
TTTCGACGACCCCTGCCGAGGTGTGCGCAAGAAGATCAATATCACCTATG
TGGCCAGGTAAACCGCCGATGTGTCTTACGAAGCCTGCTTTAGCGGCATG
ATCTAAACGTAAGCCAAAAGTCAGCGGAGATACCTGTCTGTTCAACCACT
AAGTTAGCCTACAACGCTAGCTATTTTGAGGCATCGCTCAGAACTGCAAA
AAAAAGCGACTGCCTCGCTTCTTCTGCACACCGCTACGTGGACCGTAACG
AAACACTACCTAGGGGTCTGAACGGGATCGTTCGAGTGAGCGAGAAAGAC
CGATACCTGGTGGCCGACATCGTTGTGGGATACTACAGCAGGGAGAACTT
TCGAGAAAGCAAGCTTCTGGAAGAGCGTCACAGCCTCCGCAAGAATCACC
GGGCACAAGCATCGACTCAGCAGCACTCTTCCCGCCGGGACGAACGGAGC
GGCAGCGACAGCGACAGAGACAGCGACAGCACAAACGGGCCTGTGGAGAA
CACCGGCAATTTGACCGTTGCCAACACCGACGGCCTTTGCGTGCCATGTG
ACGACCACGGCGACGGAAGCCTCGAGCCCCCGCTAACCTTGAAGACGTCG
ATGATGGTGGGCGGCGCAGGGGCGGATCCATCCGCATTAGAGGGTGGAGG
GAGAGGGAGAAGGGTGCCCACGCCGGCAGAGAGGAGGAGGGAGCGGCAGA
GGGAGCGGCGTCAGGCCCACCAGGAAGACGTTCGGCGGAAGGAGGCGGAG
CGAGAGAGCGAGCGGCGAAGGATGCGCGCGGACAAGGCGCGACGGGACCG
CGAGGTGGCGCGGGCCGTCCGCGAAGCAGAAGACGCTGAGCGCTTGCGTT
TGTTGATCGAAGCGCAGGAGGCCGAGAACAACGCCCCCGTTCCGACTCGC
CTGCTGCGCACCATGCAGAGGAAGGCGGCTGCGGCCATCGCAGCCGTGGC
GTCGGGGGCTGCTGCTGCCACCGCCGACGGTCGTGGCGTCGTCGACGGGC
CAGCCAAAGCCAGTACCACTGGTGATCGCCGGCTACCAGAAGTGAGTTTT
AGCCAAAAGCCAACGCTAATAGAAGAGCAGAGTGACGGCGGCGGCCCAGA
ACAGGGAGGAAAATGCCTCCAAGTAAGCGTCTTGGGTGATGGCGACGACA
GTCCCAGCAAGACTACGGAGACCGCGACAAGGAGACCATCTCGCAAAGAC
GTTGGCCACCGCCTCTCCGCATCGACCGCGACCGCTGCACTCGGGGTTGA
CAACGAGGAGGTCGCCGCGCTCGCGGGAGAGGCGCAGAACACTGTCGCTG
CCGACGCGCCCAAACAAGGGAAGCGGAAAACCAAAAGCCGGGAAGCGGGT
GAAGGCGGGAGGGGAAGAACAAAGGCTGCGGGTCGTCCAGTTGCAGAGAG
GCGTAACAAGGATGATCGTGGTGCTCTTTCTCGGCTCCTCCCCGGGACCA
CAGCGCAAGGAGGTTCCGCCACCGCGGCCGACGTCTTCGTCGACGCCTCC
TTGCATGAACGGTCGGGAAACAAGCGAACATCCCACACACGTGGACACAG
TAGCGCTCCACAGGGGGAAGTGGAAGCTAACTTGACGGCGGCCTCATCGC
CGCCAAGTGACGTAGGAGGAGTAGTGGTTGGAACGACTGGTCGCCCCAGA
CGAAAGCCGAGCGAGGAGAGGGCCGGGGAGCCCCGGGCCGTGTTTACGCA
TCGGGCATCCACAACATTGCCCACCGACGAAGCCACTGGCGGTGGAGAGG
CGGCCGGCGTATTGGTGGAGGGTGGAAGGGGAGGGAGACATGGGGAAAGT
CATCAACGAAGGGCTAGCAGCAAGGGTCGGGTAGGCTCGGTATTACCGGC
TCAATTTGTGAACGCTGCATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12731:1492..3413-

>mRNA_E-fasciculatus_F_contig12731.2081.1 ID=mRNA_E-fasciculatus_F_contig12731.2081.1|Name=mRNA_E-fasciculatus_F_contig12731.2081.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12731:1492..3413- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGTGGTGAAAAGCTTGTGATCGACTGTAACACCGACCTTCAGGAGCT
TTTCGACGACCCCTGCCGAGGTGTGCGCAAGAAGATCAATATCACCTATG
TGGCCAGCAGGGTGGTGAAAAGCTTGTGATCGACTGTAACACCGACCTTC
AGGAGCTTTTCGACGACCCCTGCCGAGGTGTGCGCAAGAAGATCAATATC
ACCTATGTGGCCAGGGGTCTGAACGGGATCGTTCGAGTGAGCGAGAAAGA
CCGATACCTGGTGGCCGACATCGTTGTGGGATACTACAGCAGGGAGAACT
TTCGAGAAAGCAAGCTTCTGGAAGAGCGTCACAGCCTCCGCAAGAATCAC
CGGGCACAAGCATCGACTCAGCAGCACTCTTCCCGCCGGGACGAACGGAG
CGGCAGCGACAGCGACAGAGACAGCGACAGCACAAACGGGCCTGTGGAGA
ACACCGGCAATTTGACCGTTGCCAACACCGACGGCCTTTGCGTGCCATGT
GACGACCACGGCGACGGAAGCCTCGAGCCCCCGCTAACCTTGAAGACGTC
GATGATGGTGGGCGGCGCAGGGGCGGATCCATCCGCATTAGAGGGTGGAG
GGAGAGGGAGAAGGGTGCCCACGCCGGCAGAGAGGAGGAGGGAGCGGCAG
AGGGAGCGGCGTCAGGCCCACCAGGAAGACGTTCGGCGGAAGGAGGCGGA
GCGAGAGAGCGAGCGGCGAAGGATGCGCGCGGACAAGGCGCGACGGGACC
GCGAGGTGGCGCGGGCCGTCCGCGAAGCAGAAGACGCTGAGCGCTTGCGT
TTGTTGATCGAAGCGCAGGAGGCCGAGAACAACGCCCCCGTTCCGACTCG
CCTGCTGCGCACCATGCAGAGGAAGGCGGCTGCGGCCATCGCAGCCGTGG
CGTCGGGGGCTGCTGCTGCCACCGCCGACGGTCGTGGCGTCGTCGACGGG
CCAGCCAAAGCCAGTACCACTGGTGATCGCCGGCTACCAGAAGTGAGTTT
TAGCCAAAAGCCAACGCTAATAGAAGAGCAGAGTGACGGCGGCGGCCCAG
AACAGGGAGGAAAATGCCTCCAAGTAAGCGTCTTGGGTGATGGCGACGAC
AGTCCCAGCAAGACTACGGAGACCGCGACAAGGAGACCATCTCGCAAAGA
CGTTGGCCACCGCCTCTCCGCATCGACCGCGACCGCTGCACTCGGGGTTG
ACAACGAGGAGGTCGCCGCGCTCGCGGGAGAGGCGCAGAACACTGTCGCT
GCCGACGCGCCCAAACAAGGGAAGCGGAAAACCAAAAGCCGGGAAGCGGG
TGAAGGCGGGAGGGGAAGAACAAAGGCTGCGGGTCGTCCAGTTGCAGAGA
GGCGTAACAAGGATGATCGTGGTGCTCTTTCTCGGCTCCTCCCCGGGACC
ACAGCGCAAGGAGGTTCCGCCACCGCGGCCGACGTCTTCGTCGACGCCTC
CTTGCATGAACGGTCGGGAAACAAGCGAACATCCCACACACGTGGACACA
GTAGCGCTCCACAGGGGGAAGTGGAAGCTAACTTGACGGCGGCCTCATCG
CCGCCAAGTGACGTAGGAGGAGTAGTGGTTGGAACGACTGGTCGCCCCAG
ACGAAAGCCGAGCGAGGAGAGGGCCGGGGAGCCCCGGGCCGTGTTTACGC
ATCGGGCATCCACAACATTGCCCACCGACGAAGCCACTGGCGGTGGAGAG
GCGGCCGGCGTATTGGTGGAGGGTGGAAGGGGAGGGAGACATGGGGAAAG
TCATCAACGAAGGGCTAGCAGCAAGGGTCGGGTAGGCTCGGTATTACCGG
CTCAATTTGTGAACGCTGCATAGGGGTCTGAACGGGATCGTTCGAGTGAG
CGAGAAAGACCGATACCTGGTGGCCGACATCGTTGTGGGATACTACAGCA
GGGAGAACTTTCGAGAAAGCAAGCTTCTGGAAGAGCGTCACAGCCTCCGC
AAGAATCACCGGGCACAAGCATCGACTCAGCAGCACTCTTCCCGCCGGGA
CGAACGGAGCGGCAGCGACAGCGACAGAGACAGCGACAGCACAAACGGGC
CTGTGGAGAACACCGGCAATTTGACCGTTGCCAACACCGACGGCCTTTGC
GTGCCATGTGACGACCACGGCGACGGAAGCCTCGAGCCCCCGCTAACCTT
GAAGACGTCGATGATGGTGGGCGGCGCAGGGGCGGATCCATCCGCATTAG
AGGGTGGAGGGAGAGGGAGAAGGGTGCCCACGCCGGCAGAGAGGAGGAGG
GAGCGGCAGAGGGAGCGGCGTCAGGCCCACCAGGAAGACGTTCGGCGGAA
GGAGGCGGAGCGAGAGAGCGAGCGGCGAAGGATGCGCGCGGACAAGGCGC
GACGGGACCGCGAGGTGGCGCGGGCCGTCCGCGAAGCAGAAGACGCTGAG
CGCTTGCGTTTGTTGATCGAAGCGCAGGAGGCCGAGAACAACGCCCCCGT
TCCGACTCGCCTGCTGCGCACCATGCAGAGGAAGGCGGCTGCGGCCATCG
CAGCCGTGGCGTCGGGGGCTGCTGCTGCCACCGCCGACGGTCGTGGCGTC
GTCGACGGGCCAGCCAAAGCCAGTACCACTGGTGATCGCCGGCTACCAGA
AGTGAGTTTTAGCCAAAAGCCAACGCTAATAGAAGAGCAGAGTGACGGCG
GCGGCCCAGAACAGGGAGGAAAATGCCTCCAAGTAAGCGTCTTGGGTGAT
GGCGACGACAGTCCCAGCAAGACTACGGAGACCGCGACAAGGAGACCATC
TCGCAAAGACGTTGGCCACCGCCTCTCCGCATCGACCGCGACCGCTGCAC
TCGGGGTTGACAACGAGGAGGTCGCCGCGCTCGCGGGAGAGGCGCAGAAC
ACTGTCGCTGCCGACGCGCCCAAACAAGGGAAGCGGAAAACCAAAAGCCG
GGAAGCGGGTGAAGGCGGGAGGGGAAGAACAAAGGCTGCGGGTCGTCCAG
TTGCAGAGAGGCGTAACAAGGATGATCGTGGTGCTCTTTCTCGGCTCCTC
CCCGGGACCACAGCGCAAGGAGGTTCCGCCACCGCGGCCGACGTCTTCGT
CGACGCCTCCTTGCATGAACGGTCGGGAAACAAGCGAACATCCCACACAC
GTGGACACAGTAGCGCTCCACAGGGGGAAGTGGAAGCTAACTTGACGGCG
GCCTCATCGCCGCCAAGTGACGTAGGAGGAGTAGTGGTTGGAACGACTGG
TCGCCCCAGACGAAAGCCGAGCGAGGAGAGGGCCGGGGAGCCCCGGGCCG
TGTTTACGCATCGGGCATCCACAACATTGCCCACCGACGAAGCCACTGGC
GGTGGAGAGGCGGCCGGCGTATTGGTGGAGGGTGGAAGGGGAGGGAGACA
TGGGGAAAGTCATCAACGAAGGGCTAGCAGCAAGGGTCGGGTAGGCTCGG
TATTACCGGCTCAATTTGTGAACGCTGCATAG
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