mRNA_E-fasciculatus_F_contig1272.2072.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1272.2072.1
Unique NamemRNA_E-fasciculatus_F_contig1272.2072.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: D7G0V1_ECTSI (Transcription initiation factor TFIID n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V1_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 8.040e-120
Identity = 185/214 (86.45%), Postives = 190/214 (88.79%), Query Frame = 3 
Query:   12 MEPPQGYAHAPAAQXXXXXXXXXXXXXXXXXXXVVLQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQPD 653
            ME PQGYAHAPAAQ                   VVLQNVTATVNMRI IDP+SLANKIRHAEYNPKKLPAVVMRIREPQATGL+FSSGKVV+TGA GVEAAR+AAQRFVAVVEGVGL PTTNPNQLRF VQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQE+HLNEALVRLLPILNQYRQPD
Sbjct:    1 MEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVR-VVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPD 213
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN)

HSP 1 Score: 172 bits (436), Expect = 1.690e-46
Identity = 88/177 (49.72%), Postives = 120/177 (67.80%), Query Frame = 3 
Query:  117 LQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            +QNV ATVN+RI+ID  +LA   R+AEYNPKK  AV+MR+REP+ T LVFS+GK+V+TGA   +AAR  A++F A++  +G +P        F VQNMVAT +   PI LE + Y  A++  YEPELFPGLIY+      V  +F SGR+VLTGGK   HL  A  ++ P+L ++++
Sbjct:   50 VQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFG----EFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A9CTI1_ENTBH (Transcription initiation factor TFIID n=1 Tax=Enterocytozoon bieneusi (strain H348) TaxID=481877 RepID=A9CTI1_ENTBH)

HSP 1 Score: 168 bits (426), Expect = 1.490e-45
Identity = 85/178 (47.75%), Postives = 122/178 (68.54%), Query Frame = 3 
Query:  114 VLQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            +LQNV ATVN+   +D  S+A   R+AEYNPKK  AV+MRIREP+ T L+F+SGK+VVTGA   +A+R A+QR+  +++ +G     +     FTVQN+V++ ++  PI LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG K+ E + EA   + P+L QYR+
Sbjct:   59 ILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASRIASQRYSKIIQKLGFSVYFDS----FTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A0A7S3JUH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUH6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.250e-45
Identity = 88/179 (49.16%), Postives = 122/179 (68.16%), Query Frame = 3 
Query:  111 VVLQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            +V+QNV AT N+RIAID  +LA   R+AEYNPKK  AV+MR+REP+ TGL+FS+GK+V TGA     +R  A++F AV++ +G     NP    FT+QNMVAT +V+ PI LE + Y  +++C YEPELFPG IY+      V  +F SGR+V+TG K   HL  A  ++ P+L Q+++
Sbjct:   62 IVIQNVVATANLRIAIDLKTLATSARNAEYNPKKFAAVIMRLREPRCTGLIFSTGKMVCTGAKSEHESRMGARKFAAVLDKIGW----NPKFTEFTIQNMVATADVNFPIRLEQLVYSHSKFCSYEPELFPGCIYRLVVPKTVILLFVSGRMVITGAKSVSHLQTAFDKIFPVLLQFKK 236
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A0A1Y1S6B8_9MICR (TBP n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S6B8_9MICR)

HSP 1 Score: 163 bits (412), Expect = 9.300e-44
Identity = 82/178 (46.07%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  114 VLQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            VLQNV ATVN+   +D  S+A   R+AEYNPK+  AV+MRIREP+ T L+F+SGK+VVTGA   +A++ A+QR+  +++ +G     +     F +QN+V++ ++   I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG KQ E + EA   + P+L+QYR+
Sbjct:   40 VLQNVVATVNLNCKLDLKSIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASQVASQRYAKIIQKLGFSVFFDS----FKIQNIVSSCDLKFAIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREDIFEAFENIYPVLSQYRK 213
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: L2GNX2_VITCO (TATA-box-binding protein n=1 Tax=Vittaforma corneae (strain ATCC 50505) TaxID=993615 RepID=L2GNX2_VITCO)

HSP 1 Score: 160 bits (405), Expect = 5.830e-43
Identity = 81/178 (45.51%), Postives = 119/178 (66.85%), Query Frame = 3 
Query:  114 VLQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            VLQNV ATVN+   +D  S+A + R+AEYNPK+  AV+MRIR+P+ T L+F+SGK+VVTGA   +A++ A+QR+  ++  +G     N     F +QN+V++ ++   I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG K  E + EA   + P+L QYR+
Sbjct:   23 VLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEKASKMASQRYAKIISKLGF----NAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRK 196
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A0A0P9H129_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9H129_RHOGW)

HSP 1 Score: 160 bits (404), Expect = 2.790e-42
Identity = 83/178 (46.63%), Postives = 117/178 (65.73%), Query Frame = 3 
Query:  117 LQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQP 650
            LQN+ ATVN+   +D  ++A   R+AEYNPK+  AV+MRIREP+ T LVF+SGKVVVTGA   + AR AA++F  ++  +G +         F +QN+V + +V  PI LE +AY    +  YEPELFPGLIY+     VV  +F SG++VLTG K  E + +A  ++ P+LN+YR+P
Sbjct:   66 LQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDARLAARKFARIIMKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKFREEIYQAFAQIYPVLNEYRKP 239
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BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A0A109FK61_9BASI (TBP-domain-containing protein n=3 Tax=Rhodotorula TaxID=5533 RepID=A0A109FK61_9BASI)

HSP 1 Score: 160 bits (405), Expect = 3.140e-42
Identity = 81/178 (45.51%), Postives = 119/178 (66.85%), Query Frame = 3 
Query:  117 LQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQP 650
            LQN+ ATVN+   +D  ++A   R+AEYNPK+  AV+MRIREP+ T LVF+SGKVVVTGA   + +R AA+++  +++ +G +         F +QN+V + +V  PI LE +AY    +  YEPELFPGLIY+     VV  +F SG++VLTG KQ + + +A  ++ P+LN+YR+P
Sbjct:   82 LQNLVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDSRLAARKYARIIQKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKQRDEIYQAFAQIYPVLNEYRKP 255
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A0A7S0XI96_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XI96_9RHOD)

HSP 1 Score: 159 bits (401), Expect = 3.800e-42
Identity = 78/177 (44.07%), Postives = 123/177 (69.49%), Query Frame = 3 
Query:  117 LQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            +QNV +T N+ + +D   +A + R+AEYNPK+  AV+MRIR+P+ T L+FSSGK+VVTGA G++AAR A++++  +V+ +G +   +     F VQN+VA+ +V  P+ LE +A+  + +C YEPELFPGLIY+  +  VV  VF SG+VVLTG K ++ + +A   + P+L  +++
Sbjct:   40 IQNVVSTTNLSVNLDLKEIALRARNAEYNPKRFAAVIMRIRDPKTTALIFSSGKIVVTGAKGIDAARFASRKYARIVQKLGYE---SAKFSEFKVQNIVASCDVQFPVRLEPLAHAHSNFCSYEPELFPGLIYRMINPKVVLLVFVSGKVVLTGAKVKQEIYDAFKNIYPVLCLFQK 213
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Match: A0A1W0E3I9_9MICR (TFIID n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E3I9_9MICR)

HSP 1 Score: 158 bits (400), Expect = 6.700e-42
Identity = 81/178 (45.51%), Postives = 119/178 (66.85%), Query Frame = 3 
Query:  114 VLQNVTATVNMRIAIDPASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEAARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEALVRLLPILNQYRQ 647
            VLQNV ATVN+   +D  S+A   R+AEYNPK+  AV+MRIREP+ T L+F+SGK+VVTGA   + ++ A+QR+  ++E +G     +     F VQN+V++ +V   I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG K+ E + +A   + P+L QY++
Sbjct:   49 VLQNVVATVNLNCKLDLKSIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEKESKLASQRYSKIIEKLGFSIFFD----NFKVQNIVSSCDVRFAIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKRREDIFDAFENIYPVLEQYKK 222
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1272.2072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V1_ECTSI8.040e-12086.45Transcription initiation factor TFIID n=2 Tax=Ecto... [more]
F0YMS8_AURAN1.690e-4649.72Uncharacterized protein GTF n=1 Tax=Aureococcus an... [more]
A9CTI1_ENTBH1.490e-4547.75Transcription initiation factor TFIID n=1 Tax=Ente... [more]
A0A7S3JUH6_9STRA7.250e-4549.16Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Y1S6B8_9MICR9.300e-4446.07TBP n=1 Tax=Enterospora canceri TaxID=1081671 RepI... [more]
L2GNX2_VITCO5.830e-4345.51TATA-box-binding protein n=1 Tax=Vittaforma cornea... [more]
A0A0P9H129_RHOGW2.790e-4246.63Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]
A0A109FK61_9BASI3.140e-4245.51TBP-domain-containing protein n=3 Tax=Rhodotorula ... [more]
A0A7S0XI96_9RHOD3.800e-4244.07Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A1W0E3I9_9MICR6.700e-4245.51TFIID n=1 Tax=Enterocytozoon hepatopenaei TaxID=64... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1272contigE-fasciculatus_F_contig1272:6557..11355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.0
Seed ortholog evalue1.6e-96
Seed eggNOG ortholog2880.D7G0V1
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTATA-box binding protein
Ec32 orthologEc-23_002200.1
Exons6
Model size1499
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1272.2072.1prot_E-fasciculatus_F_contig1272.2072.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1272 6568..10515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927779.664159-UTR-E-fasciculatus_F_contig1272:6556..65671622927779.664159-UTR-E-fasciculatus_F_contig1272:6556..6567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1272 6557..6567 +
1695995690.624413-UTR-E-fasciculatus_F_contig1272:6556..65671695995690.624413-UTR-E-fasciculatus_F_contig1272:6556..6567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1272 6557..6567 +
1622927779.742885-UTR-E-fasciculatus_F_contig1272:10515..113551622927779.742885-UTR-E-fasciculatus_F_contig1272:10515..11355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1272 10516..11355 +
1695995690.7183027-UTR-E-fasciculatus_F_contig1272:10515..113551695995690.7183027-UTR-E-fasciculatus_F_contig1272:10515..11355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1272 10516..11355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927779.6760066-CDS-E-fasciculatus_F_contig1272:6567..66541622927779.6760066-CDS-E-fasciculatus_F_contig1272:6567..6654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 6568..6654 +
1695995690.6507401-CDS-E-fasciculatus_F_contig1272:6567..66541695995690.6507401-CDS-E-fasciculatus_F_contig1272:6567..6654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 6568..6654 +
1622927779.6867247-CDS-E-fasciculatus_F_contig1272:7612..77381622927779.6867247-CDS-E-fasciculatus_F_contig1272:7612..7738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 7613..7738 +
1695995690.6676333-CDS-E-fasciculatus_F_contig1272:7612..77381695995690.6676333-CDS-E-fasciculatus_F_contig1272:7612..7738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 7613..7738 +
1622927779.6984406-CDS-E-fasciculatus_F_contig1272:8179..83431622927779.6984406-CDS-E-fasciculatus_F_contig1272:8179..8343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 8180..8343 +
1695995690.6793766-CDS-E-fasciculatus_F_contig1272:8179..83431695995690.6793766-CDS-E-fasciculatus_F_contig1272:8179..8343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 8180..8343 +
1622927779.7115252-CDS-E-fasciculatus_F_contig1272:9272..93561622927779.7115252-CDS-E-fasciculatus_F_contig1272:9272..9356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 9273..9356 +
1695995690.6906505-CDS-E-fasciculatus_F_contig1272:9272..93561695995690.6906505-CDS-E-fasciculatus_F_contig1272:9272..9356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 9273..9356 +
1622927779.7217388-CDS-E-fasciculatus_F_contig1272:9933..100241622927779.7217388-CDS-E-fasciculatus_F_contig1272:9933..10024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 9934..10024 +
1695995690.6997707-CDS-E-fasciculatus_F_contig1272:9933..100241695995690.6997707-CDS-E-fasciculatus_F_contig1272:9933..10024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 9934..10024 +
1622927779.7316413-CDS-E-fasciculatus_F_contig1272:10419..105151622927779.7316413-CDS-E-fasciculatus_F_contig1272:10419..10515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 10420..10515 +
1695995690.7088056-CDS-E-fasciculatus_F_contig1272:10419..105151695995690.7088056-CDS-E-fasciculatus_F_contig1272:10419..10515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1272 10420..10515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1272.2072.1

>prot_E-fasciculatus_F_contig1272.2072.1 ID=prot_E-fasciculatus_F_contig1272.2072.1|Name=mRNA_E-fasciculatus_F_contig1272.2072.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=216bp
MEPPQGYAHAPAAQPAAAENPPQNEPQQQPVVRVVLQNVTATVNMRIAID
PASLANKIRHAEYNPKKLPAVVMRIREPQATGLVFSSGKVVVTGATGVEA
ARDAAQRFVAVVEGVGLKPTTNPNQLRFTVQNMVATFEVDAPISLELMAY
CQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEEHLNEAL
VRLLPILNQYRQPDG*
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mRNA from alignment at E-fasciculatus_F_contig1272:6557..11355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1272.2072.1 ID=mRNA_E-fasciculatus_F_contig1272.2072.1|Name=mRNA_E-fasciculatus_F_contig1272.2072.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4799bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1272:6557..11355+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTGGGAGGCATGGAACCTCCCCAAGGCTACGCGCATGCTCCGGCAGCC
CAACCTGCAGCTGCAGAGAATCCTCCGCAGAACGAGCCACAACAGCAGGT
ACTTTCTAAAGTACTTTGCATCCAAGTCGGTTGTCGGAGACATTGAATGC
CAGCAGGGCACACCAACTACATGTACTGCTGTACACCAGCACGGTCAACA
GTCAACAGCAGTTGGCCTCCGGGTGGCATTTCTGCACCTCGGACCTGTGT
GGAATGGTTAGCTGCATTCATCTTCCAAAACGTCATTTCCAACAACACGC
GTACTTGATGTCATCGGATTACGGTACTTCGGTAATGTGCACGGCTGTGG
GAGATCTCTGCTGAGATCTGTCGAAGTGCGCTATTTTACTTTCTTCCGGT
CAAATAAATATACACAATCCGACGGCATGGACTACGTAGACTCAAAGTGT
AGTTCGCCCCCCATGACATCTGGACAGATGGAGATTCAACGTATTTGCAG
AGATGTGGCGAGCGTTTTCGTCGATCGAACGAGTTTTCCTGTGTACAGAG
TATGTACATATTTCGAGGCAGCCAGTGGTCTTCCTGAGCAGTACATAATG
GACAGGATGTCTACAAGACTTGTAGTCTAGACTGTGCATTTAGTCTACAC
ACTGCTGAACAGGCACTAACGAGTACCAGGTATCAATCTTCACGGGATTG
TGTGGGCTCTTGGCGTAACAGCTACATTCGGTCCGATCTACTTTTTGTGC
TCCCTCCAGCCTCGAACTCCCAGATGAACGTGGGAAAATCGACCTCGCGC
CGCAGCGGTAGCATCGGCCGCCCGCTACACAATTTAGTGCTCAAGCGAGC
GCTGGGCCTCGGCAGGCCAAGGCCCGATCCACGGGGCGTTTTGGCCTGAA
ACATCCCTCGTTCCTCCATGCCCGAACCTTTGTCTTTGCCAGTCAATTGT
TCGAGTCGCCGCAGGCACTTGGTCCTGAGCAAGGCCGAATCAATGGATAC
CTTTGGCCTGAAACAACCCCCATTCCTCGACGCCCGAACCTTTGCTTCCT
TGCCAGCCGGTTGTTCGAGTCGTGCTCCAGAATGTGACGGCGACGGTCAA
CATGCGCATCGCCATCGATCCCGCTAGCCTGGCGAACAAGATCAGGCACG
CCGAGTACAACCCGAAGAAGCTACCGGCCGTAGTAAGTCGCGCTTTGCCA
CGTCGATGTCTCCAGGTCGAAAACAAAGCCATGCGGTGGCTACGGTCGGG
AGTTCGATTCTCGGGGAGGCGTATGTTCGTTAGATACCTTGAGGAACGGA
AGGCCGAATATCCTCGCTTGTAATCAACGCTCTTACGGCAAGCAGCGCAA
AACCATTTATCTGTGTGACTCCGCGTCGGAGGTCTTCATTTCGAGGGTCA
GCGCCGCAGGGTAGGCAAACAAACGGTGAGCGATAGGTAGCCATGGGAGC
AACAACAACAGAAAAGTGTGGCGCCAGTCGCAATTCAAGAGCGATGGTCG
TCGGCGTACCTGAAAAGAACGCCAAGATTTCTACACGGTAGCACCAATGC
TCCCAGCCCCGTAGTACGTTGACCCCCGGCCCCGCTGCTGTGTTACATTG
CGTGGAAAACGATCTGCCGACAGGTGATGAGAATACGAGAGCCGCAGGCT
ACGGGCCTCGTGTTCTCTTCGGGCAAGGTGGTGGTCACGGGGGCCACGGG
CGTGGAGGCCGCTCGCGACGCCGCGCAAAGATTCGTTGCCGTCGTTGAGG
GCGTGGGACTAAAGCCCACAACCAACCCTAACCAACTGTAAGTCTGTCGG
TGGGCTTCCGCAGTTTTGTGTTTCTGTTCAGTAAACATGTTGGATACAGT
GTACAATCGGGGGCAAGTTGGGTCAGGGTTAGGGAATAGGGTCTGCGTAT
CCCCTTCTTGCTGTTTTTTCTCAAAATAGTGCTTGATTTTCTTGATTTTC
TCGCAAAGGCGGTCCAAGTTGTGTGCTGCTGCGAGGATTATACACACACA
ACAAGTTCAAGGCTGCTGCGAGGATTATACACACACAACAAGTTCAAGAC
CCGGGCGTCCGAAAATCTCGGCGCCAAGGGTACATGACAGGGCTGCTGTG
TCCCCCACACAGCAGGACCGAGCGAGTTTTCGGCAGTTTCGTGGTGGCGT
ACAAGTTCGATTCCCGAGCAACATGTACATGGTCTGCATGTGAAACAAAG
CGCCCTGCCTATACGAAAAAATGCTGGTCGGGGACCCGGACCAGTAGACA
CCCAGGCCGGTCATCACTCAACACTATGAATTAATTCAAATTGCTGCTAA
TTTGGTTTCATAGTGTTGTGTGACGACCATCCTGGGTGCTACGAGTCCGG
GTCCCCGAGCATCACCGTTTCGTAAGGCAGGGCGCTTTAGTTCATATGCA
GACCATGGGGATTGTAATACATATGTCCGGTAATTGAGCTTGCACGCCAC
CCCAAAATTGCCGAACACTCGCTCGTTTCTGCTGTGGGCGGGACACAGCA
GTCCTGTCACGTACCCTTGGCACCAAGCATTTTTGGAAGCCCGAGTTTTT
CGGTTTTGGTCATCTGGGCCCGTTCACGTCGAGCGTTTCGGGTCGTTCCT
GGATGGCAAGTTTCTCTTGGGGTCAAGTCCGAGCGCGCGTGCGGGGCAAT
GGTTGATGAATTCTCCGACCTCGGCGTATGTTTTGATAATGGTTTCTTCC
TACCCCCCCCACACAGGCGCTTCACGGTACAAAACATGGTGGCTACTTTT
GAGGTGGATGCGCCCATCAGCCTTGAGCTCATGGCATACTGCCAGGCCAG
GTGAGAGAGGCGCGAGACCAACCCATTGGCTCAACCCTACTTCAACCCGC
CCCATCCAAGCAATTGCTGATCTGTCTGACTTCACGCAACGTGACCATGT
CTTCTAACGTCCTGGGCACTGGGAGTGTGTGTGTCACAGTAGTCGCACCG
CGTTACTTTCGCTTTCGCCGCCGATTGTTGCTTTTGGGGGAAAATACAAG
GGTGTTCTCCACAAAGAAAGATATTTCGAGAGTTGTCGACATTCTTTGGT
TACTTCTCTTCGTTGATTGTGTCCCTCAATTTTGGGTTGGCGTTTTACCA
CGGAACTCCTTTCCTTCGCCCTTTACGAACAAGAAGACCGTTGTTCGAAG
TGTGTTTGTTGGTGAAGTTCCCCCTGGGTCTTCTGATGGTGTGCCTTGGG
TTCGGGTGGGTCTGTTACAGTATCATGCAAACTTTGGTGCCTTCCCGGGG
TAGGGGAAAAGGCGGCCCTGCACAGGGAGGTCAGAACACTGTTCTTCGTT
GAAGACGAACACAAGTGGCGGCAGCACTTTCCCTCTTACGACCCCCACGC
GGCTGTTTGTTCTGTACCCTTGTGCAGATGGTGCATGTACGAGCCGGAGC
TCTTTCCAGGGTTGATCTACCAGACAGCGCACAGAGGGGTGGTGGCGCAT
GTTTTCTCGTCCGGCAGGGTGAGTGGGGGATTTCTGGATAGGATATCTGG
GCCTAACGCGCCGCTGATGCCACGCTTGGTTGTCCAATATTACCGCTTGG
ATTTTTTGTGCGTAAAAAAACTCCCGTGTGACCCCGGCACATGTGTCAGA
TGTATACGCCGAAGCCGTGTAGACTGGCGCCATAATATATGGGACGAGCA
CGACGACACACATAAGCACGACCGTTTTTTACGTGTGTTTTGTGATTCGG
GAGGGAGCGCCGCAAGACCACCACCGGAAAGGTGCAACGCTGTTGGTTTC
CTTTTGGGTTCCTGTTGTATTGTACCCAGTTCTGATCGTCTCAACCGGCC
ACCATCTTGTCTCAAGGGCACCTTTGTTGCGCTTTTTCCCGCGCTGGATA
ACAATGTGATCAGGTGGTTCTGACTGGGGGCAAGCAGGAAGAACATCTCA
ATGAGGCGCTGGTCAGGCTGTTGCCCATCCTTAATCAGTACAGGCAGCCG
GATGGGTAGCGTGCTTGGGGTTAATGCGTTTCGCTTAAAAGGGAGGAACG
GAGTACAACCACTGGGAGCAAGGTTGACGATACTCCCGGCGGGAGGTTCA
ACAAAAGCCCTTGATGCCACACGCGGCTGGCGGACACCTGGTGTACATAC
GTGATGGTCGAGATGGCAAGAGTCTTGTGTTGGCACACCCGTCTTTTTCT
GTGGTTTGGCCGCCTAGTTCTTTCGGCACCGCGGCTTTCCGCGAGCATCG
ACAACCCAAGCAAACCACAGCATACACGAACGAAGCTTACCCTGCGAGAA
GGCCGATGCGATGCCTGCTGAGGTCGGTTGTGCTCACGTCATGTAGAATC
AGATTTCTGTCGAGAGAAAGAGAGAGGGGGAGAGAGGAAGGAAGGGAGAG
GGAGAGAGAGAAAATGAGACGGTTTAATGGAAATAGTGTACAGTCGTTTG
TTGCCGAAGTCCAGGAGACGGGTGCTTGCAGCACCCAATGCTTCTATTTA
TTCAAGTTGTCGTGCTCTCTCTTGACAAGTCTCGATACAAGGAGATCGTT
CAAGCCGTCGCGTCAAGAACCGACATCAAATGCCCTCTGGCGGGGCTTTG
GAGATGTGGCAGGCTGCGATCGTTTTGATATCGGCGGTGTGTGTATGAGA
GGCACGGCCAAGACGGCCGTGGCGATACTGCTGTCTGTATTTAGTTTGCA
CGAGTTGAGAGCACTTCGCCACGTTGTCAAATAAGTGCTAAAAGAGCGAC
AGCGACACGTTTGTAGGCTGCCCCACGGCAACTAACTGTGGCCGATGCGG
CATTTGGAGGTTTTACGCTCAATTTGAGCTTACCGGCAAAAATAGCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1272:6557..11355+

>mRNA_E-fasciculatus_F_contig1272.2072.1 ID=mRNA_E-fasciculatus_F_contig1272.2072.1|Name=mRNA_E-fasciculatus_F_contig1272.2072.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1272:6557..11355+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAACCTCCCCAAGGCTACGCGCATGCTCCGGCAGCCCAACCTGCAGC
TGCAGAGAATCCTCCGCAGAACGAGCCACAACAGCAGATGGAACCTCCCC
AAGGCTACGCGCATGCTCCGGCAGCCCAACCTGCAGCTGCAGAGAATCCT
CCGCAGAACGAGCCACAACAGCAGCCGGTTGTTCGAGTCGTGCTCCAGAA
TGTGACGGCGACGGTCAACATGCGCATCGCCATCGATCCCGCTAGCCTGG
CGAACAAGATCAGGCACGCCGAGTACAACCCGAAGAAGCTACCGGCCGTA
CCGGTTGTTCGAGTCGTGCTCCAGAATGTGACGGCGACGGTCAACATGCG
CATCGCCATCGATCCCGCTAGCCTGGCGAACAAGATCAGGCACGCCGAGT
ACAACCCGAAGAAGCTACCGGCCGTAGTGATGAGAATACGAGAGCCGCAG
GCTACGGGCCTCGTGTTCTCTTCGGGCAAGGTGGTGGTCACGGGGGCCAC
GGGCGTGGAGGCCGCTCGCGACGCCGCGCAAAGATTCGTTGCCGTCGTTG
AGGGCGTGGGACTAAAGCCCACAACCAACCCTAACCAACTGTGATGAGAA
TACGAGAGCCGCAGGCTACGGGCCTCGTGTTCTCTTCGGGCAAGGTGGTG
GTCACGGGGGCCACGGGCGTGGAGGCCGCTCGCGACGCCGCGCAAAGATT
CGTTGCCGTCGTTGAGGGCGTGGGACTAAAGCCCACAACCAACCCTAACC
AACTGCGCTTCACGGTACAAAACATGGTGGCTACTTTTGAGGTGGATGCG
CCCATCAGCCTTGAGCTCATGGCATACTGCCAGGCCAGGCGCTTCACGGT
ACAAAACATGGTGGCTACTTTTGAGGTGGATGCGCCCATCAGCCTTGAGC
TCATGGCATACTGCCAGGCCAGATGGTGCATGTACGAGCCGGAGCTCTTT
CCAGGGTTGATCTACCAGACAGCGCACAGAGGGGTGGTGGCGCATGTTTT
CTCGTCCGGCAGGATGGTGCATGTACGAGCCGGAGCTCTTTCCAGGGTTG
ATCTACCAGACAGCGCACAGAGGGGTGGTGGCGCATGTTTTCTCGTCCGG
CAGGGTGGTTCTGACTGGGGGCAAGCAGGAAGAACATCTCAATGAGGCGC
TGGTCAGGCTGTTGCCCATCCTTAATCAGTACAGGCAGCCGGATGGGTAG
GTGGTTCTGACTGGGGGCAAGCAGGAAGAACATCTCAATGAGGCGCTGGT
CAGGCTGTTGCCCATCCTTAATCAGTACAGGCAGCCGGATGGGTAG
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