mRNA_E-fasciculatus_F_contig12710.2068.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12710.2068.1 vs. uniprot
Match: D8LD17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD17_ECTSI) HSP 1 Score: 602 bits (1552), Expect = 7.440e-205 Identity = 414/595 (69.58%), Postives = 428/595 (71.93%), Query Frame = 1
Query: 1 RSLAALAGERDRALRSLAAEEDRRRDVIEELTSLLGGELSCGDVSRLAMGLERIEREEGPAXXXXXXXXXXQERGRAWVLERVEQLEALALEVKRGEGWKRAAAVAPAG-----GAGESVESAGPADGLDDGGGDGV------DRAVEAVGGTGASASSDGSWSFPSCNQEEAGTADRAEEAGRPAAAGSGDGGAXXXXXXXXXXXXXXXXXXX----PADXXXXXKQAGEPRQGATTGRKASSGVGGDDGGPLLSVKTDHASDGGEGTSGSLAAXXXXXXXXXXXXXXXSELGEVERWRMVARRSEASLADLRETLGDVLALSFLCGQESAQRRGKXXXXXXXXXXXXXXTGGVGRHTEGEGDKEAGCEDPNGVLGVVAGLERVVDAAAAXXXXAERSVLEEAVEGTGGRSVGTSRGRERFSPGESKAAAVDVLLKRLEALAADQGGDIARLEASLQALRGSSAPXXXXXXXXXXXXXXAGDSGRGGLDGSAHGEGVQAVAGLKAEDVSDPESHSPVAADS-VAARAEGDREGGVSKGEAGQGGRGSRDASPKRDIRTEWEELDGLDTHLAHYQGGGGLGSQAVQGVLDRWIDV 1737
RSLAALAGERD RRRD+IEELTSLLGGELSCGDVSRLAMGLERIERE GPA XXXXXXXXQERGRAWVLERVEQLEALALEV+RGEG KRAAAVA AG GAGE+VES PADGLDDG DRAVE VGG GASASSDGSWSFPSC+QE GTA XXXXXXXXXXXXX PAD KQA EPR GAT GR ASSG DDG PLL VK DHASDGGEGTSG L A SE GEVERWR+ ARRSEASLADLRETLG VLALSF+CG+ESA+RRGK GGV TEG DKEAGC DP+ VLGVVA LERV DAAAA AE SV EEAVEGTGG SVGTSRGRERFSPGE+KA+AVDVLLKRLEAL+ DQGGDIARLE SLQALRGSSA GDSGR L GSA E QA AGLKAEDVSDP+ HSP AA + VA R EGD EGGVSKGEAGQGGRGSRDASPKRDIRTEWEELDGLDTHL HYQGGGGLGSQAVQGVLDRWIDV
Sbjct: 49 RSLAALAGERDXXXXXXXXXXXRRRDMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAAXXXXXXXXQERGRAWVLERVEQLEALALEVRRGEGKKRAAAVALAGVGEGGGAGEAVESGEPADGLDDGXXXXXXXXXXXDRAVEGVGGAGASASSDGSWSFPSCSQE--GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGTGAAATRPADEAAADKQAQEPRGGATAGRTASSGGADDDGCPLLPVKADHASDGGEGTSGRLVAAPGGGDAQPPAAS--SEPGEVERWRVAARRSEASLADLRETLGSVLALSFMCGEESARRRGKEEE-----------AGGVRLPTEGGVDKEAGCGDPDSVLGVVAALERVGDAAAAA---AESSVSEEAVEGTGGTSVGTSRGRERFSPGEAKASAVDVLLKRLEALSVDQGGDIARLETSLQALRGSSATPTAATAGAAGVSSL-GDSGRVDLGGSAREESAQAAAGLKAEDVSDPKLHSPAAAAAAVAPRGEGDHEGGVSKGEAGQGGRGSRDASPKRDIRTEWEELDGLDTHLGHYQGGGGLGSQAVQGVLDRWIDV 624
BLAST of mRNA_E-fasciculatus_F_contig12710.2068.1 vs. uniprot
Match: A0A6H5KXC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC9_9PHAE) HSP 1 Score: 495 bits (1275), Expect = 2.950e-161 Identity = 378/774 (48.84%), Postives = 405/774 (52.33%), Query Frame = 1
Query: 1 RSLAALAGERDRALRSLAAEEDRRRDVIEELTSLLGGELSCGDVSRLAMGLERIEREEGPAXXXXXXXXXXQERGRAWVLE--------------------------------------------------------------------------------------------------------RVEQLEALALEVKRGEGWKRAAAVAPAGGAGESVESAGPADGLDDGGGDGVDRAVEAVGGTGAS-------------------ASSDGSWSFPSCNQEEAGTADRAEEAGRPAAAG---SGDGGAXXXXXXXXXXXXXXXXXXXPADXXXXXKQAGEPRQGATTGRKASSGVGGDDGG--PLLSVKTDHASDGGEGTSGSLAAXXXXXXXXXXXXXXXSELGEVERWRMVARRSEASLADLRETLGDVLALSFLCGQESAQRRGKXXXXXXXXXXXXXXTGGVGRHTEGEGDKEAGCEDPNGVLGVVAGLERVVDAAAAXXXXAERSVLEEAVEGTGGRSVGTSRGRERFSPGESKAAAVDVLLKRLEALAADQGGDIARLEASLQALRGSSAPXXXXXXXXXXXXXXAGDSGRGGLDGSAHGEGVQAVAGLKAEDVSDPESHSPVAADS-VAARAEGDREGGVSKGEAGQGGRGSRDASPKRDIRTEWE---------------------------ELDGLDTHLAHYQGGGGLGSQAVQGVLDRWIDVSKRNILEGWLGHVLHGGPVDSANGSFVPRVQMSSLSKEV 1854
RSLAALAGER RRR++IEELTSLLGGELSCGDVSRLAMGLERIERE GPA QERGRAWVLE RVEQLEALALEV+RGE KRAA VA AG + +GGG ASSDGS S PSC+QE G DRAEEAGRPAA GDGG PAD KQA EPR GAT GR AS PL VKTDHASDGG+G S SLAA S EVERW+M ARRSEASL+DLR+ LG VLALSF+CG+ESA+RRG+ GGV GE DKEAGC DP+ VLGVVAGLERV DAAAA XX FSPGE+KAAAVDVLLKRLEAL DQGGDIARLEASLQALRGSSA +G+SGRG L G+AH E QA AGLKA+DVSDP+ HSP AA + VA R E ++EGGVSKGEAG+ GRGSRDASPKRDIRT+WE ELDGLDTHL HYQGGGGLGSQAVQGVLDRWIDVSKRNILEGWLGHVLHGGPVDSANGSFVPRVQ+SSLSKEV
Sbjct: 49 RSLAALAGERXXXXXXXXXXXXRRRNMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQERGRAWVLEQVRQCLFAKVAVQDQLRSSADEIAADMFEAEEGLMGFQVGPGGGQDAEGASPISRPPPPTDVAVAAVGPGADGGALWSARSESVARARASASEALATSLRLARRRVEQLEALALEVRRGERKKRAAVVALAG--------------VGEGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSDGSLSRPSCSQE--GAVDRAEEAGRPAAGSVEPGGDGGTCAAEATAEGERTGAAATR-PADEAAADKQAQEPRGGATAGRTASXXXXXXXXXXXPLHPVKTDHASDGGKGASVSLAAAPGGGDAQPPPVSPES--CEVERWKMAARRSEASLSDLRKNLGSVLALSFMCGEESARRRGEGKEE----------AGGVRLAAGGEVDKEAGCGDPDSVLGVVAGLERVEDAAAAAAXXXXXXXXXXXXXXX--XXXXXXXXXXXFSPGEAKAAAVDVLLKRLEALTVDQGGDIARLEASLQALRGSSATPTAGAAGVSS----SGNSGRGDLGGNAHEESAQAAAGLKADDVSDPKLHSPAAAAAAVAPRGEREQEGGVSKGEAGRRGRGSRDASPKRDIRTDWEIEYINRWHAWPPYSSAIGSKVIGVVQQELDGLDTHLGHYQGGGGLGSQAVQGVLDRWIDVSKRNILEGWLGHVLHGGPVDSANGSFVPRVQLSSLSKEV 787 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12710.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12710.2068.1 >prot_E-fasciculatus_F_contig12710.2068.1 ID=prot_E-fasciculatus_F_contig12710.2068.1|Name=mRNA_E-fasciculatus_F_contig12710.2068.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=618bp RSLAALAGERDRALRSLAAEEDRRRDVIEELTSLLGGELSCGDVSRLAMGback to top mRNA from alignment at E-fasciculatus_F_contig12710:104..3553+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12710.2068.1 ID=mRNA_E-fasciculatus_F_contig12710.2068.1|Name=mRNA_E-fasciculatus_F_contig12710.2068.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12710:104..3553+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12710:104..3553+ >mRNA_E-fasciculatus_F_contig12710.2068.1 ID=mRNA_E-fasciculatus_F_contig12710.2068.1|Name=mRNA_E-fasciculatus_F_contig12710.2068.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12710:104..3553+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |