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Homology
BLAST of mRNA_E-fasciculatus_F_contig127.2059.1 vs. uniprot
Match: A0A6H5K5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q9_9PHAE) HSP 1 Score: 230 bits (586), Expect = 2.690e-63 Identity = 210/357 (58.82%), Postives = 226/357 (63.31%), Query Frame = 3
Query: 15 RGRATVGGGASGTSGLGVQGRDIVARPTRPLAARPVMEKERPTRGFEDNSHHSLATVDPEQXXXXXXXXXXXXXXXXXXXXXXXXR----------------WAVPLEQQEQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYMDQLERREXXXXXXXENG-NPGALEAVDNVDDDMFQLADAEEDAERTKAKLDQCEAWVSQKREALARFRRECEAEVKHIKAVMEEHVGHLERKLEGEIQAALDETVKAKIEHNHRDKHRVRYCRCCSSPGPAKRSTSCPPSPLALWCPRCGVSIDSCGHAFFQMPSEAHLSLPERT---VLSPWHSGCEHGQPSNQSLALRDLDGLQTF 1025
RGR T ASGTSGLGV D+VARP RPLA+RPVMEKERPT GFEDNSH SL TVDPEQXXXXXXXXXXXXXXXXXXXXXXXX WAV Q XXXXXXXXXXX XX YM XXXXXXX N ALEA D VD+DMFQLADAEEDAER KAK+DQCEA V QK+EALARFRR+CEAEV+ IKAVMEEHV LE KL+GEIQ +LD TVKAKIEHNHRDK R R S A +PL R I S + + P + H ERT +LSPW SGCEHGQPSN+S ALR LD + F
Sbjct: 256 RGRTTXXXXASGTSGLGVHSLDVVARPARPLASRPVMEKERPTHGFEDNSHSSLPTVDPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAVQXXXQ------------------GXXXXXXXXXXXERQRXXQYMXXXXXXXXXXXXXXXXXXNADALEAADTVDNDMFQLADAEEDAERNKAKMDQCEALVRQKQEALARFRRDCEAEVERIKAVMEEHVAQLELKLKGEIQVSLDGTVKAKIEHNHRDKSRARKAHQILSSFSA--------APLVSKMRRFDWPIHSDTLSSSRCP-QRHTFARERTDLFLLSPWDSGCEHGQPSNRSPALRHLDEVVDF 585
BLAST of mRNA_E-fasciculatus_F_contig127.2059.1 vs. uniprot
Match: D7FM03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM03_ECTSI) HSP 1 Score: 210 bits (535), Expect = 5.640e-61 Identity = 116/169 (68.64%), Postives = 125/169 (73.96%), Query Frame = 3
Query: 414 DQLERREXXXXXXXENGNPGALEAVDNVDDDMFQLADAEEDAERTKAKLDQCEAWVSQKREALARFRRECEAEVKHIKAVMEEHVGHLERKLEGEIQAALDETVKAKIEHNHRDKHRVRYCRCCSSPGPAKRSTSCPPSPLALWCPRCGVSIDSCGHAF-FQMPSEAHL 917
D LER E ENG ALEA DNVDDD FQL DAEEDAERTKAK+DQCEAWV QK+EALARFRR+CEAEVK IKAVMEEHVG LE KL+GE+Q +LD V+AKIEHNHRDK P KR+ SCPPSPL LW RCGVSIDS G+A FQ PSEAHL
Sbjct: 3 DPLERSEDEEQQHEENGTADALEAADNVDDDRFQLVDAEEDAERTKAKMDQCEAWVRQKQEALARFRRDCEAEVKRIKAVMEEHVGQLELKLKGEMQVSLDGFVEAKIEHNHRDKR------------PGKRTRSCPPSPLPLWSRRCGVSIDSFGYAIIFQTPSEAHL 159
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-22_000380.1 |
| Exons | 6 |
| Model size | 1979 |
| Cds size | 1047 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig127.2059.1 >prot_E-fasciculatus_F_contig127.2059.1 ID=prot_E-fasciculatus_F_contig127.2059.1|Name=mRNA_E-fasciculatus_F_contig127.2059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=349bp
MEKERPTRGFEDNSHHSLATVDPEQQQQQQQQQQQHDQHYQRQQQQQQQR
WAVPLEQQEQQAQEQQAQEHQREEHQREEQQREEQQREEQQREEQYMDQL
ERREDEEQQHEENGNPGALEAVDNVDDDMFQLADAEEDAERTKAKLDQCE
AWVSQKREALARFRRECEAEVKHIKAVMEEHVGHLERKLEGEIQAALDET
VKAKIEHNHRDKHRVRYCRCCSSPGPAKRSTSCPPSPLALWCPRCGVSID
SCGHAFFQMPSEAHLSLPERTVLSPWHSGCEHGQPSNQSLALRDLDGLQT
FGHQRTAPAPTLRSGASHSPSSTGAENFVWDHPTLASKAVEPQWTTAS* back to topmRNA from alignment at E-fasciculatus_F_contig127:31887..37352+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig127.2059.1 ID=mRNA_E-fasciculatus_F_contig127.2059.1|Name=mRNA_E-fasciculatus_F_contig127.2059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5466bp|location=Sequence derived from alignment at E-fasciculatus_F_contig127:31887..37352+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTAGCGGGGCACGGGGCAGGGCCACCGTTGGTGGTGGAGCTTCGGGA
ACGTCCGGGCTTGGGGTCCAAGGCCGAGACATTGTCGCTCGACCCACTCG
TCCTCTGGCTGCTAGGCCAGTGATGGAGAAGGAAAGGTGGGTGTAGCACG
CCCTCGAAAAAAAGGATACTCGTCTACCCATTCTCGGATCTACGTTTACA
GTGCTGCTGTTGTCCTTGTCGCTGAACCTGGTGCTCATGTTGCAGCTGCT
GTATGTTTTTGTGCAGAATTAGTCAAGAGCAACGCACAGAAAACACAGAA
AATCTTCACAAAAAAAACACGGAATATGGCTTTCTCAGGCCTGTTTTTTG
TTTTGCTTGGAATTGTGTCGTATCTTTCATCGTCGGTAGTACTCTGTAGG
GATTCAGAAGGCGTTCTTGTTCTTGTTGGCACCAAGGTACGATCGGCGGG
CGGGACGCCGCAACTGGCTGAGTTCGTGCCTTTTCCTGACCGCGCTGCAC
TTGATACCATGGTCTCGCTTAGCACTGTGATTGCTCGGCTCACTGATGTC
CATGGGCCATGTTTCTGAGATGTTCGGACTTGAGATCACATTGACACAGT
ATTTAACAGCTTTTGGGGGGGATCCAGAGTTACGTCCTTCTGCGAACACA
ACGAGACACATTCTCGAAGGAGCTAGTCTTGTCACGCGGCGATAACAACA
AAATTATCGTATGGCTTTCACCTTCATGGTATTTTCCTGCTCATCATGAC
CCTTTTCATATTGGGGTCATTTGTTGTTCGTTTTGATATGAATTCATACA
CATTTCCTTAACGCAAAAATAGCCTGAAGACGAGACTTGGCGTATATTGT
CCAAAACAAAATGGTTTGTTTGGAGTGTTTTTGTATTGAACGAAGGCAGA
GCAAAATACGTTTGTCCCTGACGAAATGACGACGACTTTGACGTCAACGG
CAATCGCCAGGCCAACCCGTGGTTTCGAGGACAACAGTCACCATAGCCTG
GCTACAGTCGACCCTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCA
ACACGATCAGCACTATCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGGG
CGGTTCCACTTGAACAACAGGAGCAGCAGGCACAGGAGCAGCAGGCACAG
GAGCATCAGCGTGAGGAGCATCAGCGTGAGGAGCAACAGCGTGAGGAGCA
ACAGCGTGAGGAACAACAGCGTGAGGAGCAATACATGGACCAGTTGGAGC
GTCGTGAGGACGAGGAACAACAGCACGAGGAGAATGGCAACCCGGGCGCG
TTGGAAGCTGTGGACAACGTCGACGATGACATGTTCCAACTGGCCGACGC
AGAGGAGGACGCCGAACGCACCAAGGCCAAACTGGTGAGAGGGGGGCATT
CCGCGTGGTGCTGTACCGACCCAGCTGCAAGACTTGTGAGGAAACGAGCG
TCCGCGGGTGATGATGTATCTTGCTGATTTTGCTCCTCACAAGACAACCA
GGTCCACACTTGTGAGAGAAGAGGTCCCACCGTGTGACGATTGGTTGACT
TGAGTTATGTTGATACCGAGACCGCGATCAAGGTGGTGAGGAATTTCGGC
GTTCATTCTTCGTTGCTGGCTGAACTAACCCAAGGGAGCACGTATTCGGC
TCTCTCCTTGGAGACGAAATGTTTGTGGTATCTCGGGGCGCTGGGGTTGT
TTGTGGTCGCTGTCATTGGCATCAGGGCAGACGTGAGCGATAAATGGTTC
AGCCTGCGCGGGGCTGAATGTGCTGCTTAGGACTACGGTTGTCGTTAGGA
GTACGGTGTGAAGCCGAAACACGCCCTACCAGGGCCGCGTGTAAGCTAGA
AAAACACAAGCGCTTGGATAGAGGGTACGCCCCCGGGGGATTGCAGCAGG
GGCTAGAGCTAACCGTGTCAAAGGTTGTTACCCGAAAAAAAAAGGATTTC
GGTTGATACGGCTGTCTTGAGTTTTGGGGCATGATATCAAATCAGCCGTG
TCGGCAACGCGTGTAGCGGCACTGCTGACCCTCTTGCGAAAGCCCTAACC
GCAAGTCGGTGGCAGCGAGAGCCCGCGATGATGATGAAAAACCTAGAAGA
CGTCCAGACAGGGTGCCTCGAGCCACGGATCATCTTCACCACGCTCGTAG
ATGTGAACAGCCAGTCGACGATGGGTTATCGCCATCTGCCCCCCACCATC
TGACAGATGCATCTCTCTCCCGTAGGTAGACTTTTCTTTGGCTCGTAATC
CAACCAAATCACCCACTGACAGACAAGCTTGACGTTTGATATCCACTGCA
TAATCGTTTTCTCGTGGGCAATGCTTTCCAACTCATGGGACATTGGCCAT
TTTGACCCACGGGCTCCTGCGAACAACCTTCCTCGCGTGGTTGCAGGATC
AATGTGAGGCCTGGGTGAGCCAGAAGCGGGAAGCTTTGGCCAGGTTTCGT
AGGGAGTGCGAGGCGGAGGTGAAGCACATCAAGTGAGACACACACACAAG
AAAGAGAGGGGGGGGGTAGAGATGGATGGAGAGGAGACAGTCATGGTCGC
ACACATCCTATTCGATAACGCGGTTTGGCTGGCCTACGAACACCTCGGCA
CACCCTCAACGTATGTATACATTCAACGTCAACACTGTGTAGTATAGGCG
TGAAAGTTGTGAACATTTGCCCAGCGGACAGTTTTCTAGTCCAATCCGGT
GATGGAACGCCCGACAATAGTTAGAATGACAGAGAGGTGACTAAATAGAG
GGCGTGGACAACATGATGAGGTCTACCCGTCTCACAACCTTTGCCGTCAC
GGGTGTTTTATTATGGGTTCTCGTAATATTCTTGGTTCTGACATGTCTCG
ATGGTCTATCAATTTCGTTGCTCTTGAGTTGTTCCCCCTGTCCACCTTGC
CATACCAGTCTGTAGTGCTTAGTCCTGGTGATTTCCATACTCTCATAATT
TCTGTGCTGGCATAGGTTTCCCCTCTGGTACACACCTGCGTGCCATCGTG
TTTTCTCTTTTGCCAGGGCGGTCATGGAGGAGCACGTCGGCCACCTAGAG
CGCAAGCTGGAAGGAGAAATCCAAGCTGCTCTGGACGAAACCGTCAAAGC
CAAAATCGAACACAACCACAGGGACAAACACCGGTAACGACCCCCCCCTC
CTTGCGGGGTTTCGACTGCGCGGTGTTTGGCTGCTCTCGCGACTACTCTA
TCCGCCAGCTGTTAGGTCCTGTTACATGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTCGTTGTCTCTTTTGTTGTTACGAATGTTTTGGGCGTTGGCG
TTGGTTTTTGGGCGTTGACGTTGGTGGTGATGGTATTGAAGTGGGGTCGG
TAGTGTCGTTGTGCCCCGCTTTCTTCAAGTCCAACGCACCCCGCTGCCTC
CTCACACCTTATCCCGGGCTGGTGCTTAACGAATGAGTTGTATCTTCTCG
GATGGTCCCAAACGAACAAGATCCTGAAAACAAGACCAAATGTTTTTTTT
TTGTGTAGTGTTGTGAGAATTGTTTTGCTAGGGACAAACAAGACCCCCAC
AGACGTGCCGAACACGAGCAGTACCAAAACGGGGTACGTGATTTGGTGGA
AGTCTAAGGGTACGTTATTGTCGTTGTTGTTCGTCCCCAGGGCCCGCAAA
GCGCAGCACCTCCTGTCCTCCTTCTCCGCTGGCCCTCTGGTGTCCAAGAT
GCGGCGTTTCGATTGGTGAGTTCCGCACACAGCTGCAGCAAGGGGGTACA
GGTATTGACAACAGTCCAAGTCAAGCCTAGAAGCAATTTTGAGCTTCAAT
ATACTCAACCCTTCTCACTCAAACGGTGGCATGCAGTTTTTGTCGCACTC
ATGCAAGACGTGAGCAGAATATGATTCAGTTGGGGCATAAACGTTGTATA
AGAAGTGAGGCAAACGATGTAAGCCATTGTAGAACATGGCCCCCAGCATA
GGTTTGGTTCTTGTTTTGCAACGAGAGTTCTTGTCTGGGGTCCCAGTGTC
CTGCTGTAGCGCTTGTCGAATGTTATGGTGCGGACTCAACGATAACACCG
ATTAGGTTAAGTGTGTCGAACATGTGTGAACAATACTAAGAAGAGACGCG
GTGTAGTCTACAGACACGCGGTCGCCTACGCGTGCAGCTCAATCATCACA
CACCGGACGAGAAGAATATCGATTGCGTGCGTTACAGGCGGGCGATATGA
TCGTAGACGAGAGTAATCCTCCGCCACTAGATTATTGTTTGGGTTAGGGT
TGCTCACGGAATAAAATTGAACACTCGTTTTACACCGCATGTGCAAGTTG
CTTCTGTTTCCGTGGCTGATACACACCGCAACATATTCCACGGCACGGAC
ACGGTAGATTCATGCGGACACGCTTTCTTCCAGATGCCCTCAGAGGCACA
CCTTTCTTTGCCGGAGCGTACGGTTCTGTCTCCATGGCACTCCGGATGTG
AACACGGGCAGCCCTCGAACCAGTCTCTAGCTTTGCGAGACCTCGATGGG
TTGCAGACTTTCGGCCACCAGCGTACTGCACCAGCACCAACACTTCGGTC
GGGTGCCAGCCATAGCCCGAGCTCTACAGGGGCTGAAAATTTTGTCTGGG
ACCACCCTACCCTTGCCTCCAAAGCGGTTGAGCCTCAATGGACGACAGCG
TCATGAACATGACCCTCGGGATGACGGGGGTGTACGTCTTCGAGAACGAC
GTTGGCTTTGCTGGACCCACGCTACGTAGTCTAGACCTCTTTCATAGTTC
ATCCATCCGTATCGTGCCTTCGTGGTTCCACTCTGTGAACTGTTGGCGTG
CGAGGGGGCGGTGACTACCATAGAGGGCGAGCGTAGACGTAGAACATTAG
CACGCCGTTTGATCTCGGGTATTATACACTGTGGGAGCTACCAACTGTAT
TTTATCTACAGGTAGCTCGTGGTACATGTTGAGGCATCAATTTGTGTTGG
AAGCACATGTTGGAGGTTGAATCGCGGGGCGAAGCGTAGTAGTCAAGACA
CGTTGCATCGTCCTTTGCGTTTGAGGTTTTCAGTGAGAATCATTTTTTGT
CATGTCTGGATCTTTCACACACACCCTTTCGTTGTGCTGGACGTGGGAAT
ACTTGGAGGGCCAAGTCTCGAATGCGGGGAGGCGTGCTGTATTCGTGGGT
GAGGGATACAGGCAGCACCTCCAACAGATCGGCACAATGTCGGCGGGCTT
CCACGCACTCAATCGTCACGCTTGCATGGCGGTGAAGCCTTTGCCGCCGT
ATGGACACACGCGAGCGATCGACAGGTTGGGTTGACAGTGCTACGTAGTA
GTGGTCCGTTGCGCAACCCATTGGACCAGCATTGTTAGAAAGTTCCCACC
GATTTCACGCTCTTGCCGCCCACCAAAGGCCACAGGCTCGAGTGCGCAAC
AGCCCTCCGTCGTTTGCATTGGAGCATTAAACCGCAAGTCGGCGGCAGAT
GCTTTCCAGACAGTAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig127:31887..37352+ >mRNA_E-fasciculatus_F_contig127.2059.1 ID=mRNA_E-fasciculatus_F_contig127.2059.1|Name=mRNA_E-fasciculatus_F_contig127.2059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2094bp|location=Sequence derived from alignment at E-fasciculatus_F_contig127:31887..37352+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGAAGGAAAGATGGAGAAGGAAAGGCCAACCCGTGGTTTCGAGGAC
AACAGTCACCATAGCCTGGCTACAGTCGACCCTGAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACAGCAACACGATCAGCACTATCAGCGGCAGCAGCAGC
AGCAGCAGCAGCGGTGGGCGGTTCCACTTGAACAACAGGAGCAGCAGGCA
CAGGAGCAGCAGGCACAGGAGCATCAGCGTGAGGAGCATCAGCGTGAGGA
GCAACAGCGTGAGGAGCAACAGCGTGAGGAACAACAGCGTGAGGAGCAAT
ACATGGACCAGTTGGAGCGTCGTGAGGACGAGGAACAACAGCACGAGGAG
AATGGCAACCCGGGCGCGTTGGAAGCTGTGGACAACGTCGACGATGACAT
GTTCCAACTGGCCGACGCAGAGGAGGACGCCGAACGCACCAAGGCCAAAC
TGGCCAACCCGTGGTTTCGAGGACAACAGTCACCATAGCCTGGCTACAGT
CGACCCTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACACGATC
AGCACTATCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGGGCGGTTCCA
CTTGAACAACAGGAGCAGCAGGCACAGGAGCAGCAGGCACAGGAGCATCA
GCGTGAGGAGCATCAGCGTGAGGAGCAACAGCGTGAGGAGCAACAGCGTG
AGGAACAACAGCGTGAGGAGCAATACATGGACCAGTTGGAGCGTCGTGAG
GACGAGGAACAACAGCACGAGGAGAATGGCAACCCGGGCGCGTTGGAAGC
TGTGGACAACGTCGACGATGACATGTTCCAACTGGCCGACGCAGAGGAGG
ACGCCGAACGCACCAAGGCCAAACTGGATCAATGTGAGGCCTGGGTGAGC
CAGAAGCGGGAAGCTTTGGCCAGGTTTCGTAGGGAGTGCGAGGCGGAGGT
GAAGCACATCAAGATCAATGTGAGGCCTGGGTGAGCCAGAAGCGGGAAGC
TTTGGCCAGGTTTCGTAGGGAGTGCGAGGCGGAGGTGAAGCACATCAAGG
CGGTCATGGAGGAGCACGTCGGCCACCTAGAGCGCAAGCTGGAAGGAGAA
ATCCAAGCTGCTCTGGACGAAACCGTCAAAGCCAAAATCGAACACAACCA
CAGGGACAAACACCGGGCGGTCATGGAGGAGCACGTCGGCCACCTAGAGC
GCAAGCTGGAAGGAGAAATCCAAGCTGCTCTGGACGAAACCGTCAAAGCC
AAAATCGAACACAACCACAGGGACAAACACCGGGTACGTTATTGTCGTTG
TTGTTCGTCCCCAGGGCCCGCAAAGCGCAGCACCTCCTGTCCTCCTTCTC
CGCTGGCCCTCTGGTGTCCAAGATGCGGCGTTTCGATTGGGTACGTTATT
GTCGTTGTTGTTCGTCCCCAGGGCCCGCAAAGCGCAGCACCTCCTGTCCT
CCTTCTCCGCTGGCCCTCTGGTGTCCAAGATGCGGCGTTTCGATTGATTC
ATGCGGACACGCTTTCTTCCAGATGCCCTCAGAGGCACACCTTTCTTTGC
CGGAGCGTACGGTTCTGTCTCCATGGCACTCCGGATGTGAACACGGGCAG
CCCTCGAACCAGTCTCTAGCTTTGCGAGACCTCGATGGGTTGCAGACTTT
CGGCCACCAGCGTACTGCACCAGCACCAACACTTCGGTCGGGTGCCAGCC
ATAGCCCGAGCTCTACAGGGGCTGAAAATTTTGTCTGGGACCACCCTACC
CTTGCCTCCAAAGCGGTTGAGCCTCAATGGACGACAGCGTCATGAATTCA
TGCGGACACGCTTTCTTCCAGATGCCCTCAGAGGCACACCTTTCTTTGCC
GGAGCGTACGGTTCTGTCTCCATGGCACTCCGGATGTGAACACGGGCAGC
CCTCGAACCAGTCTCTAGCTTTGCGAGACCTCGATGGGTTGCAGACTTTC
GGCCACCAGCGTACTGCACCAGCACCAACACTTCGGTCGGGTGCCAGCCA
TAGCCCGAGCTCTACAGGGGCTGAAAATTTTGTCTGGGACCACCCTACCC
TTGCCTCCAAAGCGGTTGAGCCTCAATGGACGACAGCGTCATGA back to top
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