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Homology
BLAST of mRNA_E-fasciculatus_F_contig127.2058.1 vs. uniprot
Match: A0A6H5K5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q9_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.030e-54 Identity = 147/256 (57.42%), Postives = 163/256 (63.67%), Query Frame = 3
Query: 144 MKPASGGQSSLGGGASSRPYPTSPFTSKGALEASTFGNGRSSSVGGXXXXXXXXLALQTRRP-AFTAHAMPRPPPISGTTPASGSGGMARFNRAKAPRASAPXXXXXXXXXXXXXXXXXXXXXXXX----------GASRTASLDTSESFPAVRMTSQPSSAGSGAGASSSRQDDGNNQAPPNDELSQERPGCWHPMTGEVRAAMSATDALPKTRPPGTSAYRWPPRGDVGGVPAATGDRSSSERSGVRRVAGEEE 878
M+PA GGQ+S GGGASSRP P + TSKGA EAST+GNGRSS XXX L+L RRP A TAH MPRP P++G AS SGGM RFN A+ PRA+ XXXXXX XXXXXXX GA RTAS DTSE A+R SQ SS G AG++SSR+DD ELSQERP CW P + A+SAT P TRPPGTS YR PPRGD GG P TGDR + RSGVRRVAGEEE
Sbjct: 1 MQPAGGGQASRGGGASSRPSPNASLTSKGAPEASTYGNGRSSGX----XXXSGGLSLPGRRPVATTAHPMPRPSPLAGRIAASASGGMRRFNTAQTPRAAPAAAXXXXXXTVTXXXXXXXAVDVRAVAAGVAATAVGAYRTASPDTSERSLAMRRISQQSSTGCCAGSTSSRRDDA--------ELSQERPACWVPGAAALNEALSATGGSPATRPPGTSTYRRPPRGDAGGGPGTTGDRPGAGRSGVRRVAGEEE 244
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 886 |
| Cds size | 741 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig127.2058.1 >prot_E-fasciculatus_F_contig127.2058.1 ID=prot_E-fasciculatus_F_contig127.2058.1|Name=mRNA_E-fasciculatus_F_contig127.2058.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp
MKPASGGQSSLGGGASSRPYPTSPFTSKGALEASTFGNGRSSSVGGGGSG
SGGGLALQTRRPAFTAHAMPRPPPISGTTPASGSGGMARFNRAKAPRASA
PTGAAAAAATVAATNAAATAAATAVGASRTASLDTSESFPAVRMTSQPSS
AGSGAGASSSRQDDGNNQAPPNDELSQERPGCWHPMTGEVRAAMSATDAL
PKTRPPGTSAYRWPPRGDVGGVPAATGDRSSSERSGVRRVAGEEEDG back to topmRNA from alignment at E-fasciculatus_F_contig127:28899..31873+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig127.2058.1 ID=mRNA_E-fasciculatus_F_contig127.2058.1|Name=mRNA_E-fasciculatus_F_contig127.2058.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2975bp|location=Sequence derived from alignment at E-fasciculatus_F_contig127:28899..31873+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAATTTCATTTCATCGTAGCACAGAGAAAGAGCCAGCAGGGGCCCTTG
CACACCGGCGCACACGTCCTCGACTAGCTGGTGAGCATAGTCTTTGCATT
TCGTGGATCGGGGGTCTACATGCACAAGAGTCCCCCTGTGTACTGCCCTC
TGGTCTCCCGTTACCTGTCCGTGCTTGATGTATCTCCAGAGATTTTCCCG
GACTTTTGCGTGACAGAGAGTAGTCCCGGACTTTGGCGTGAACCACAACA
GATATTGTGTTAGAGTGAGAATTCACCCTGTAGCTCGGCCCTGAGTCTAC
ATGCCGGGTTGGAGGCTTCTGCTGAAGCAGGAGTTGCAGATTTTGTCGGT
CGGCCCTGCTGTCTTCATATCTATAGAGTCTGTGTAAAATTCAAATTTCC
GCACGACAGAGTGACGAGTGACTTCCAGATGAGAGGGCCCCCTGCAATAT
CTGTGTGCAGCAAAGCGCTGGCGCTGCTCCGCAAGTGGGAGTCGTGACGG
CCAGAGCCTACCTCCTAGAGCGATTTACCGGAAGGACTTCTCATAATAAG
ACAATCACACGGGGAGACATTTTTCAACTTTTGACGAATCCCGCCGCCTG
GTTGGGCACTTTGAATCCCCAAGATCACGAGAGAAAAAGTGACGGCAACG
ATGTACTGTCTAGCCTATATTCGAGGCGCGTGCTGCAAGACCACCTTATC
CACAGTGAGATGTCCCCGTTATTGGTCAGCTGATGCCAGCGGTGTGACGA
ATGGGTTGACAACATTGTGCGAGATACATCGTAATGTGTGTAGCAGCAGT
GGGTTCCCCCGCACACACTAAATACAAGATAATACACCATGCTGCGGCAA
AGACATCGCTAGCCTAAAAGCACACAACCACGCACGCGCGAAAAGTCACG
GTGAACAAAAAAATACCCAGCACATGGCGTAATTTCTGCAGTTCGTACGA
AAAACCGGCACTACCGAACATTGTGATGCAACGATGCAACCGTGTGATGA
CATCGGCCATGTCCTCTTGCACCGCCCCCGGAAGGCAGGTCACAACAACT
CCTTAAAGGGGAGCCTTGTGCTGCTGTAGGTTGACTGTTCCCTCAGCATG
CCCTCAGTTTACGCGGACCCTTCTCCTTAATTCGTCGGTTCGTTTGGCAG
GTTCACGTGTCGTACTCTCCCCCGCCACCAAACAACCTCCAGCAACGGTA
CTCCACACGCGTCATGAAACCGGCCAGCGGAGGACAAAGCTCACTCGGCG
GTGGTGCGTCTTCGCGACCATACCCGACTTCACCGTTCACATCAAAGGGA
GCTCTCGAAGCATCGACGTTCGGCAACGGCCGCAGTAGCAGCGTAGGCGG
AGGCGGCAGCGGCAGCGGCGGCGGCCTTGCGCTACAAACCCGGCGCCCGG
CCTTCACCGCGCACGCCATGCCCCGCCCGCCTCCTATTTCCGGGACAACA
CCGGCTTCCGGGTCTGGTGGAATGGCTCGTTTCAATCGCGCAAAGGCACC
CCGCGCTTCTGCTCCTACTGGTGCTGCTGCTGCTGCTGCTACCGTTGCTG
CTACCAATGCTGCTGCCACCGCTGCTGCCACTGCTGTTGGAGCCAGCCGT
ACCGCGAGCCTCGACACCAGGTGCGGTGCAATTCCCGGGCGAAGGAAACA
GATCTAATGAAATCCAACGACAGAACCGTGTTTGGGTATTATTCTTAACC
TTGGAAAATAGCGTACGACATGATTTTCCTAGTAGAATAAGACGGGACGC
GGTGGCCACCGCGACAAGCGCCTCCTGGTGCATTACCCCAATGCGTTCAT
ACAGCCTGGTGTTCTCTGGTTCACCCTGTGGGCATTTTCTGCGTGTGTCT
CTTTCAGCGAGAGCTTTCCGGCGGTGAGAATGACGTCACAGCCGTCGTCT
GCCGGATCTGGTGCCGGTGCTAGTTCTTCACGGCAAGACGATGGGAACAA
TCAAGCCCCACCCAATGATGAGCTTTCCCAGGTATGGTAAAGTGTTTTTT
CGAAAGTTGTTGTCGTTTTTTTGGGGCTGGTGTTGGTGGTGGAAGTGTGC
TCGCACACATTAGCCCAACATGTCGAACAATAACACGATACTTCGAACCC
ATGCCCACAATGCCTTTGTCAAAAGCGTCTCCTTGCATGAGGCAAGACAC
GTACCAGCGTGTTGCAGCTTCTTGGGCATAAACCAAAGCACGCGGTTCAG
AATGCGCAGAGATAGAAAGCAAGCGCCTGTGAGAAAACACCTTCCAGCGC
CCCGGCTAGTCGTTGTTTTTTATCAGACGACTACCTGTCCTCCAGTGACG
ACACCGCGAGAAACGCTGTGAGGTTAGATTGCTCCACGAGGGCAGAACCA
TCGACTGGTTATCGGACCACATGGTCTCTACGACTGATGGTGGGTCCCAG
GGGGCGCGTTCTTCGTGCTCCTTGTGTGCAAGTCCTCCTCCTTCCGCCGT
CCATCAAAGTGGTGTTGGTCACACGTCTACTTCATAGAAAATCAAGAACA
GCACGCCGCCGTGCTCATTCTTGACCCACAACACTAAGTATCCAAGTAAA
TGGCCGTGCTCATTCTTGACCCACAGCACTATGCATCCAAGTAAATGTCC
AATATGGTCTTAGAAGCCCAGCATATTTCGTCATTACCCTCCACCCGTTC
GTAGTGTTGCTCTTCACAGCAGCAAAACGAACACAAAACCTACCAACAAC
GCAGCTAAGTGATGCATTCCTTCCATTGACGCACGTGCGTGAATGTAACT
GTGCCGCCTACGTAGGAACGCCCCGGTTGTTGGCACCCGATGACGGGGGA
GGTGAGGGCGGCAATGTCGGCCACCGACGCCTTACCCAAGACGCGCCCTC
CCGGAACCTCCGCTTACCGTTGGCCCCCTCGCGGAGATGTCGGGGGCGTC
CCTGCTGCTACTGGCGATAGGTCTAGTTCAGAGAGGTCGGGTGTGAGGAG
GGTAGCTGGAGAAGAGGAAGACGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig127:28899..31873+ >mRNA_E-fasciculatus_F_contig127.2058.1 ID=mRNA_E-fasciculatus_F_contig127.2058.1|Name=mRNA_E-fasciculatus_F_contig127.2058.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig127:28899..31873+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAACCGGCCAGCGGAGGACAAAGCTCACTCGGCGGTGGTGCGTCTTC
GCGACCATACCCGACTTCACCGTTCACATCAAAGGGAGCTCTCGAAGCAT
CGACGTTCGGCAACGGCCGCAGTAGCAGCGTAGGCGGAGGCGGCAGCGGC
AGCGGCGGCGGCCTTGCGCTACAAACCCGGCGCCCGGCCTTCACCGCGCA
CGCCATGCCCCGCCCGCCTCCTATTTCCGGGACAACACCGGCTTCCGGGT
CTGGTGGAATGGCTCGTTTCAATCGCGCAAAGGCACCCCGCGCTTCTGCT
CCTACTGGTGCTGCTGCTGCTGCTGCTACCGTTGCTGCTACCAATGCTGC
TGCCACCGCTGCTGCCACTGCTGTTGGAGCCAGCCGTACCGCGAGCCTCG
ACACCAGATGAAACCGGCCAGCGGAGGACAAAGCTCACTCGGCGGTGGTG
CGTCTTCGCGACCATACCCGACTTCACCGTTCACATCAAAGGGAGCTCTC
GAAGCATCGACGTTCGGCAACGGCCGCAGTAGCAGCGTAGGCGGAGGCGG
CAGCGGCAGCGGCGGCGGCCTTGCGCTACAAACCCGGCGCCCGGCCTTCA
CCGCGCACGCCATGCCCCGCCCGCCTCCTATTTCCGGGACAACACCGGCT
TCCGGGTCTGGTGGAATGGCTCGTTTCAATCGCGCAAAGGCACCCCGCGC
TTCTGCTCCTACTGGTGCTGCTGCTGCTGCTGCTACCGTTGCTGCTACCA
ATGCTGCTGCCACCGCTGCTGCCACTGCTGTTGGAGCCAGCCGTACCGCG
AGCCTCGACACCAGCGAGAGCTTTCCGGCGGTGAGAATGACGTCACAGCC
GTCGTCTGCCGGATCTGGTGCCGGTGCTAGTTCTTCACGGCAAGACGATG
GGAACAATCAAGCCCCACCCAATGATGAGCTTTCCCAGCGAGAGCTTTCC
GGCGGTGAGAATGACGTCACAGCCGTCGTCTGCCGGATCTGGTGCCGGTG
CTAGTTCTTCACGGCAAGACGATGGGAACAATCAAGCCCCACCCAATGAT
GAGCTTTCCCAGGAACGCCCCGGTTGTTGGCACCCGATGACGGGGGAGGT
GAGGGCGGCAATGTCGGCCACCGACGCCTTACCCAAGACGCGCCCTCCCG
GAACCTCCGCTTACCGTTGGCCCCCTCGCGGAGATGTCGGGGGCGTCCCT
GCTGCTACTGGCGATAGGTCTAGTTCAGAGAGGTCGGGTGTGAGGAGGGT
AGCTGGAGAAGAGGAAGACGGGGAACGCCCCGGTTGTTGGCACCCGATGA
CGGGGGAGGTGAGGGCGGCAATGTCGGCCACCGACGCCTTACCCAAGACG
CGCCCTCCCGGAACCTCCGCTTACCGTTGGCCCCCTCGCGGAGATGTCGG
GGGCGTCCCTGCTGCTACTGGCGATAGGTCTAGTTCAGAGAGGTCGGGTG
TGAGGAGGGTAGCTGGAGAAGAGGAAGACGGG back to top
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