mRNA_E-fasciculatus_F_contig12693.2055.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12693.2055.1
Unique NamemRNA_E-fasciculatus_F_contig12693.2055.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.640e-24
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 2 
Query:    8 MEGDTGSGSSIAADEWGSAVASGDATKIAELVLVWSGSKPERALSILKDCVSVLEREVVVSVPASSPLQSPPTSPDG 238
            MEG  GS SS   DEWG AVASGDATK+AELVL+WSG KPERALS+++DCVSVLE+EV +S P SSPL++ PT+  G
Sbjct:    1 MEGRAGS-SSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTTLGG 76
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.060e-20
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 2 
Query:    5 VMEGDTGSGSSIAADEWGSAVASGDATKIAELVLVWSGSKPERALSILKDCVSVLEREVVVSVPASSPLQSP 220
            VMEGD GSGS+ + D+WG AVA+GDATK+AELVLVWSGS+PE ALS+L++CV +LE E   SVP SSPLQSP
Sbjct:   55 VMEGDVGSGSA-SPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSP 125
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.020e-19
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:    8 MEGDTGSGSSIAADEWGSAVASGDATKIAELVLVWSGSKPERALSILKDCVSVLEREVVVSVPASSPLQSPPTS 229
            MEGD GSGS+   D WGSAVASGDAT +AELVL+W G  P  ALSIL+ CV+VLE+EV +S P SSPL SP TS
Sbjct:    1 MEGDAGSGSARP-DAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTS 73
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.170e-13
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 2 
Query:   56 GSAVASGDATKIAELVLVWSGSKPERALSILKDCVSVLEREVVVSVPASSPLQSPPTSPDGWGAAVTNGDTTKLAELV--LVWSGSKPEHALSVLRNCVS 349
            GSAVASG ATK+AELVLVWS SKPERALSI + CVS+LE+E   S   SSPL    T+P    ++  N     L+E      W  S  E  L+ L  C +
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTA 170
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.590e-11
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 2 
Query:  269 TKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAPACP-LPSPPTTPGGS 424
            T+LA+LVLVWSGS+PE ALS+L++CVSL+E+E AFSAPA P +P  PT PG S
Sbjct:   57 TRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPS 109
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.900e-7
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 2 
Query:   47 DEWGSAVASGDATKIAELVLVWSGSKPERALSILKDCVSVLEREVVVSVPASSPLQSPPTSPDGWGAAVTNGDTTKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAF 373
            DEW SAVA GDA K+++LVL  +GS  E ALSILK CV++LE++   +   ++P    P   DG   +   G TT   +     +GS P     +    V L++    F
Sbjct:    2 DEWNSAVAGGDAEKLSDLVLSSAGSSTEAALSILKSCVTILEKKQAAAT-GTTPANGGPA--DGSPKSDVTGTTTXXXDS----NGSAPSSPPLLTLENVQLLQPRGRF 103
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BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Match: A0A6H5KI43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI43_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.130e-5
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 2 
Query:   47 DEWGSAVASGDATKIAELVLVWSGSKPERALSILKDCVSVLER 175
            DEW SAVA GDA K+++LVL+ +GS  + ALSILK CV++LE+
Sbjct:    2 DEWKSAVAGGDAAKLSDLVLLSAGSSTDAALSILKSCVTMLEK 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12693.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FH80_ECTSI1.640e-2468.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE2.060e-2070.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA8_ECTSI1.020e-1967.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI5.170e-1349.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI2.590e-1167.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH98_ECTSI6.900e-736.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI43_9PHAE2.130e-560.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12693contigE-fasciculatus_F_contig12693:2062..3842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size433
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927776.190214-CDS-E-fasciculatus_F_contig12693:2061..22611622927776.190214-CDS-E-fasciculatus_F_contig12693:2061..2261Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12693 2062..2261 -
1695995689.177777-CDS-E-fasciculatus_F_contig12693:2061..22611695995689.177777-CDS-E-fasciculatus_F_contig12693:2061..2261Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12693 2062..2261 -
1622927776.2112875-CDS-E-fasciculatus_F_contig12693:2643..28321622927776.2112875-CDS-E-fasciculatus_F_contig12693:2643..2832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12693 2644..2832 -
1695995689.1865413-CDS-E-fasciculatus_F_contig12693:2643..28321695995689.1865413-CDS-E-fasciculatus_F_contig12693:2643..2832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12693 2644..2832 -
1622927776.2264392-CDS-E-fasciculatus_F_contig12693:3798..38351622927776.2264392-CDS-E-fasciculatus_F_contig12693:3798..3835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12693 3799..3835 -
1695995689.196346-CDS-E-fasciculatus_F_contig12693:3798..38351695995689.196346-CDS-E-fasciculatus_F_contig12693:3798..3835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12693 3799..3835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927776.2390256-UTR-E-fasciculatus_F_contig12693:3835..38421622927776.2390256-UTR-E-fasciculatus_F_contig12693:3835..3842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12693 3836..3842 -
1695995689.2096937-UTR-E-fasciculatus_F_contig12693:3835..38421695995689.2096937-UTR-E-fasciculatus_F_contig12693:3835..3842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12693 3836..3842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12693.2055.1prot_E-fasciculatus_F_contig12693.2055.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12693 2062..3835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12693.2055.1

>prot_E-fasciculatus_F_contig12693.2055.1 ID=prot_E-fasciculatus_F_contig12693.2055.1|Name=mRNA_E-fasciculatus_F_contig12693.2055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
MEGDTGSGSSIAADEWGSAVASGDATKIAELVLVWSGSKPERALSILKDC
VSVLEREVVVSVPASSPLQSPPTSPDGWGAAVTNGDTTKLAELVLVWSGS
KPEHALSVLRNCVSLMEEEVAFSAPACPLPSPPTTPGGSLE*
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mRNA from alignment at E-fasciculatus_F_contig12693:2062..3842-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12693.2055.1 ID=mRNA_E-fasciculatus_F_contig12693.2055.1|Name=mRNA_E-fasciculatus_F_contig12693.2055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1781bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12693:2062..3842- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCGTCATGGAGGGAGACACCGGTTCGGGGTCCTCAATAGCCGGTGAGC
AAAGAAAGAACTGTATGGTGCAGAAATCGAGTTCCAGTTTTTTCCCTTCA
TCTGATAAGAGTTGAACCTCACAAGCGCCACATGAATGCTGGTGCCGTGA
ACTTCTTCCGTTCGATCCCTTGTGCGTTTCTATTTCGATGAGCAGCGCCG
GTTGCGGGCTCGGCAGTCGCAGCGTGATTCCTGTTTGGCTGGTAGTTTCT
CTGCCCGTCTCGAGCGTGTCCTGAATGCTGCTAAATGGATCGTTGTTGTG
TTTATACCTTAGTCCCGCTTTCCCTAGATGCGAAAGGTGGTATCTAGGTA
TCAACGTGCCGGAAGGCATTTCGAAGGAACAGCTCTTCATACACTTGGGA
GCTACTTTACTCGTCGATGGCCACGTTCCTTGCATTCTTCGCATGTTTCG
AAGGAATCCTGAATGGGCTGGCTTTTGGAAACTTTTGTGCTTCCCCACGC
GGTTGGACGTCACTGCTGGTGCCGTCCTTTCGTATTCAGCTATGTACCGA
GCTATGCAGTTCAAGTGCTTCCTTCGATAGTGTTGTGCCACGCCGTCTTT
AGATTTGATGCATATGGGGAAAGGTTCGGTTATGTCGTCTTGAGTGGTGC
TCTACAGCGGACAACTCTACCGCCACATTGTTTGGGCACTTTCGTGAATG
GGAAGACAAACCACGCGTACTACATCCTCTGCTGCCGATTTTCTCGGGCA
ATGGACCAGCGCATGGAATGGATGACATTAATATTTTTGACAGATTTTTA
CTTGTGACACGTGGGCCAAGTGTTTGAACGCGTGAGCCTTATGATGTACT
GAAGCCTTTCCTCTGGACCATATTCAAGAATCTTGTTGCGATTGATCTCT
CTCGAAGAACATCGTCGTATTTGCAGGTGGTAATAGGGTGTCATGTCGAA
CCTTGTGTCATCCTGACCCAGCAATTGTCGTTGACAACACCGACACAACT
GACGGTTCAGCAGATGAATGGGGTTCGGCCGTGGCGAGCGGCGACGCGAC
CAAGATAGCCGAGCTGGTGCTGGTTTGGTCCGGTTCAAAGCCCGAGCGGG
CTCTGTCGATTCTGAAAGACTGCGTTTCTGTGCTGGAGAGGGAGGTTGTG
GTTTCAGTTCCGGCTTCTTCTCCCCTTCAATCGCCCCCGACTTCGCCGGG
TGGGTTCCTTTTCGTCGTTACAGTTCTTAAAATGGCCTGCACCCTGACCG
CCTTGAGGTGATGCCACGGGTCTTGCATGCTGGCTGAGAACTGCTTCGTG
TTCTTTCCTAGCAGTGAGGCGTGCCGAGGGGTGCTCAGAGCGTAGCGCCG
GTCTTGTCATAAGACCCCATCTCGTCATGTATCCCTGGCCGTTTTGTAGA
TTCCGTCCGATAGTTGAATAACACGACTGAGTCCAAATTGTGTAACGAAC
CATGGACCTTTACGAGGAAACAAGTTGGTTTGAATCTCTTTCGAGGGAAA
TCGCAGTAATCGGAAGTAGGCTTCGACGAATCCAAAACCACCACGTAGCT
TTGACAACACCATATAATTATGATTCTGCAGATGGATGGGGCGCGGCCGT
GACCAACGGCGACACTACTAAGCTAGCTGAGCTGGTGCTGGTTTGGAGCG
GTTCAAAGCCCGAGCATGCTCTGTCCGTTCTGAGGAACTGCGTTTCTTTG
ATGGAGGAGGAGGTTGCGTTTTCAGCTCCGGCTTGTCCCCTTCCTTCGCC
CCCGACTACTCCCGGTGGGTCCCTCGAGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12693:2062..3842-

>mRNA_E-fasciculatus_F_contig12693.2055.1 ID=mRNA_E-fasciculatus_F_contig12693.2055.1|Name=mRNA_E-fasciculatus_F_contig12693.2055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12693:2062..3842- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGGAGACACCGGTTCGGGGTCCTCAATAGCCGATGGAGGGAGACA
CCGGTTCGGGGTCCTCAATAGCCGCAGATGAATGGGGTTCGGCCGTGGCG
AGCGGCGACGCGACCAAGATAGCCGAGCTGGTGCTGGTTTGGTCCGGTTC
AAAGCCCGAGCGGGCTCTGTCGATTCTGAAAGACTGCGTTTCTGTGCTGG
AGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTTCTCCCCTTCAATCGCCC
CCGACTTCGCCGGCAGATGAATGGGGTTCGGCCGTGGCGAGCGGCGACGC
GACCAAGATAGCCGAGCTGGTGCTGGTTTGGTCCGGTTCAAAGCCCGAGC
GGGCTCTGTCGATTCTGAAAGACTGCGTTTCTGTGCTGGAGAGGGAGGTT
GTGGTTTCAGTTCCGGCTTCTTCTCCCCTTCAATCGCCCCCGACTTCGCC
GGATGGATGGGGCGCGGCCGTGACCAACGGCGACACTACTAAGCTAGCTG
AGCTGGTGCTGGTTTGGAGCGGTTCAAAGCCCGAGCATGCTCTGTCCGTT
CTGAGGAACTGCGTTTCTTTGATGGAGGAGGAGGTTGCGTTTTCAGCTCC
GGCTTGTCCCCTTCCTTCGCCCCCGACTACTCCCGGTGGGTCCCTCGAGT
AAATGGATGGGGCGCGGCCGTGACCAACGGCGACACTACTAAGCTAGCTG
AGCTGGTGCTGGTTTGGAGCGGTTCAAAGCCCGAGCATGCTCTGTCCGTT
CTGAGGAACTGCGTTTCTTTGATGGAGGAGGAGGTTGCGTTTTCAGCTCC
GGCTTGTCCCCTTCCTTCGCCCCCGACTACTCCCGGTGGGTCCCTCGAGT
AA
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