mRNA_E-fasciculatus_F_contig12692.2054.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12692.2054.1
Unique NamemRNA_E-fasciculatus_F_contig12692.2054.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12692.2054.1 vs. uniprot
Match: D7G4F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 7.080e-26
Identity = 86/197 (43.65%), Postives = 108/197 (54.82%), Query Frame = 1 
Query:    1 AVLFIADVDEKAMMVLKNVKGKWRLFWVLEAIGLSFFLAALAIKVTGNGTIVSRRE---SMLWRWDYGWYDEFDTWYFILFLHPISVTVFSLVVSSFVSTPVRRGPLSCV---DRSSRGLAFGCLMLCWLVVAI----ARVYVGVTVLFAEYVALGCSIPIALCSCRELRTHIINGSRRFRTTVHHRQRKYLLFGGL 561
            AVLFIADVDEKA  VLKNV GKWRLFWVLE IG+SF LA  ++K TGN   V+ RE   +    W  G   +  TW +I    P++VTV +L+++S VS P+   P+      DR  +   F  L LCW+ +        VY  V VLF   VAL     IA  S REL      G+ RF  T   R+R YL + G+
Sbjct:  193 AVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPI--SPIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVAL----VIACRSFRELYRAFTRGAERFSATDK-RRRFYLFWAGM 382
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BLAST of mRNA_E-fasciculatus_F_contig12692.2054.1 vs. uniprot
Match: A0A6H5JP75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP75_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.500e-12
Identity = 72/196 (36.73%), Postives = 98/196 (50.00%), Query Frame = 1 
Query:    1 AVLFIADVDEKAMMVLKNVKGKWRLFWVLEAIGLSFFLAALAIKVTGNGTIVSRRESMLWRWDY-GWYDEFD--TWYFILFLHPISVTVFSLVVSSFVSTPVRRGPLSCVDRSSRGLAFGCLM-LCWLVVA-----IARVYVGVTVLFAEYVALGCSIPIALCSCRELRTHIINGSRRFRTTVHHRQRKYLLFGGL 561
            AVLFIADVDEKA  VLKN  GK RL WVLE IG+SF LA  ++K T N   V+ +++  ++ D  GW ++    TW +I F  P++VTV                      R +  +    L+ LCW+ +      I  + V + VLF   VA    + IA  S REL      G+ RF T    R+R YL + G+
Sbjct:  179 AVLFIADVDEKAHTVLKNFSGKSRLCWVLEIIGMSFVLATFSLKATDNYGRVAGKDA--YKSDCAGWGNDCGIFTWQYIFFELPLTVTV---------------------SRPTLAMEHVLLLALCWVSMPYFFRWIILLAVAI-VLFVVVVA----VVIARRSFRELYRAFTQGAERF-TATDKRRRFYLFWAGI 345
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12692.2054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4F1_ECTSI7.080e-2643.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP75_9PHAE4.500e-1236.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12692contigE-fasciculatus_F_contig12692:3098..3910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927776.1135573-CDS-E-fasciculatus_F_contig12692:3097..36341622927776.1135573-CDS-E-fasciculatus_F_contig12692:3097..3634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12692 3098..3634 -
1695995689.1582446-CDS-E-fasciculatus_F_contig12692:3097..36341695995689.1582446-CDS-E-fasciculatus_F_contig12692:3097..3634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12692 3098..3634 -
1622927776.1262236-CDS-E-fasciculatus_F_contig12692:3886..39101622927776.1262236-CDS-E-fasciculatus_F_contig12692:3886..3910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12692 3887..3910 -
1695995689.167969-CDS-E-fasciculatus_F_contig12692:3886..39101695995689.167969-CDS-E-fasciculatus_F_contig12692:3886..3910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12692 3887..3910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12692.2054.1prot_E-fasciculatus_F_contig12692.2054.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12692 3098..3910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12692.2054.1

>prot_E-fasciculatus_F_contig12692.2054.1 ID=prot_E-fasciculatus_F_contig12692.2054.1|Name=mRNA_E-fasciculatus_F_contig12692.2054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=187bp
AVLFIADVDEKAMMVLKNVKGKWRLFWVLEAIGLSFFLAALAIKVTGNGT
IVSRRESMLWRWDYGWYDEFDTWYFILFLHPISVTVFSLVVSSFVSTPVR
RGPLSCVDRSSRGLAFGCLMLCWLVVAIARVYVGVTVLFAEYVALGCSIP
IALCSCRELRTHIINGSRRFRTTVHHRQRKYLLFGGL
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mRNA from alignment at E-fasciculatus_F_contig12692:3098..3910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12692.2054.1 ID=mRNA_E-fasciculatus_F_contig12692.2054.1|Name=mRNA_E-fasciculatus_F_contig12692.2054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=813bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12692:3098..3910- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGTTCTCTTCATCGCGGATGTGGTAAGCGACCTCGACGTACCGTAGCA
TAGCACACATAAGTTCGCAGAGAGCACGCGTTGATCCAACGTCAAAAGCC
ACTATTATACTTACGCGATGAACTGCTGCTTTGCCTTGTTCATCTACACA
AGAAGAGTTGGCTCTACTTGGCCGAGTTTCTCGGTGAACTTGGGTGCCGC
CTGCACACTTTGGCGAAACTCTCTGTACACCTGCTTCTACCCGAACGCCC
TTCCTTGTACTATTGTTACTGCTTAGGACGAGAAGGCAATGATGGTGCTG
AAGAACGTGAAGGGAAAATGGCGTCTGTTCTGGGTGCTCGAGGCCATTGG
CTTGAGTTTCTTCCTTGCCGCTCTGGCAATAAAAGTCACTGGGAATGGTA
CCATAGTTAGCAGACGAGAATCCATGCTGTGGAGGTGGGATTATGGTTGG
TATGACGAATTTGATACTTGGTATTTCATCCTGTTCCTTCACCCTATCTC
CGTGACGGTCTTCTCTTTGGTGGTATCAAGTTTCGTTTCCACACCTGTTC
GGCGAGGACCACTGAGTTGCGTCGATCGTTCCTCTCGTGGGTTGGCGTTT
GGTTGCCTCATGCTTTGTTGGTTGGTCGTAGCTATTGCGCGGGTTTATGT
CGGTGTGACGGTCTTGTTTGCTGAATACGTGGCATTAGGGTGCTCCATTC
CCATCGCACTGTGCAGCTGTCGGGAGCTGAGAACGCACATAATTAACGGC
TCACGAAGATTTCGCACTACGGTGCATCACCGCCAGAGAAAGTATCTCCT
GTTCGGAGGGTTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12692:3098..3910-

>mRNA_E-fasciculatus_F_contig12692.2054.1 ID=mRNA_E-fasciculatus_F_contig12692.2054.1|Name=mRNA_E-fasciculatus_F_contig12692.2054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12692:3098..3910- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGTTCTCTTCATCGCGGATGTGGCTGTTCTCTTCATCGCGGATGTGGA
CGAGAAGGCAATGATGGTGCTGAAGAACGTGAAGGGAAAATGGCGTCTGT
TCTGGGTGCTCGAGGCCATTGGCTTGAGTTTCTTCCTTGCCGCTCTGGCA
ATAAAAGTCACTGGGAATGGTACCATAGTTAGCAGACGAGAATCCATGCT
GTGGAGGTGGGATTATGGTTGGTATGACGAATTTGATACTTGGTATTTCA
TCCTGTTCCTTCACCCTATCTCCGTGACGGTCTTCTCTTTGGTGGTATCA
AGTTTCGTTTCCACACCTGTTCGGCGAGGACCACTGAGTTGCGTCGATCG
TTCCTCTCGTGGGTTGGCGTTTGGTTGCCTCATGCTTTGTTGGTTGGTCG
TAGCTATTGCGCGGGTTTATGTCGGTGTGACGGTCTTGTTTGCTGAATAC
GTGGCATTAGGGTGCTCCATTCCCATCGCACTGTGCAGCTGTCGGGAGCT
GAGAACGCACATAATTAACGGCTCACGAAGATTTCGCACTACGGTGCATC
ACCGCCAGAGAAAGTATCTCCTGTTCGGAGGGTTGGACGAGAAGGCAATG
ATGGTGCTGAAGAACGTGAAGGGAAAATGGCGTCTGTTCTGGGTGCTCGA
GGCCATTGGCTTGAGTTTCTTCCTTGCCGCTCTGGCAATAAAAGTCACTG
GGAATGGTACCATAGTTAGCAGACGAGAATCCATGCTGTGGAGGTGGGAT
TATGGTTGGTATGACGAATTTGATACTTGGTATTTCATCCTGTTCCTTCA
CCCTATCTCCGTGACGGTCTTCTCTTTGGTGGTATCAAGTTTCGTTTCCA
CACCTGTTCGGCGAGGACCACTGAGTTGCGTCGATCGTTCCTCTCGTGGG
TTGGCGTTTGGTTGCCTCATGCTTTGTTGGTTGGTCGTAGCTATTGCGCG
GGTTTATGTCGGTGTGACGGTCTTGTTTGCTGAATACGTGGCATTAGGGT
GCTCCATTCCCATCGCACTGTGCAGCTGTCGGGAGCTGAGAACGCACATA
ATTAACGGCTCACGAAGATTTCGCACTACGGTGCATCACCGCCAGAGAAA
GTATCTCCTGTTCGGAGGGTTG
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