prot_E-fasciculatus_F_contig1269.2052.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1269.2052.1
Unique Nameprot_E-fasciculatus_F_contig1269.2052.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length317
Homology
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 473 bits (1218), Expect = 1.060e-166
Identity = 241/249 (96.79%), Postives = 242/249 (97.19%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGDGEGKEGKEPAARGAKRKADGEAVTSASLDA 249
            M+FPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQ V   EGLLNLTGLEFMLVELPPEMSFLPPGQPAP GPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDG  EGKEGKEPAARGAKRKADGEAVTSASLDA
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDG--EGKEGKEPAARGAKRKADGEAVTSASLDA 247          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 1.810e-98
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE 150
            MDFPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQGV   EGLLNLTGLEFMLVELPPEMSFLPPGQPAP GPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.910e-45
Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 0
Query:    8 EDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVK-LPEGLLNLTGLEFMLVELPPEMSFLP-PGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAE-EDRDAKAALKLSMDNILMGLVEKYIDGDGDG 220
            ED  Q SF D +WL+ + LGP+ A+DYFALSPFYD+  NNE CRMQG+      +  +TG+E+++ ELPPE   LP PG P    PQPR L VIKKQ RKS +  EV+ +YYIM+G IYQAP+   LI SRL K    L+ +F  L  L    ++ G YDW W  EA                  + + A +A++   D IL+ LV +Y   +G+G
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPA-HNARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 124 bits (311), Expect = 3.570e-30
Identity = 87/252 (34.52%), Postives = 137/252 (54.37%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKYIDGDGDGEGKEGKEPAARGAKRKADG-EAVTSASL 247
            M+    A+D    SF D VWLQ + L PQ  L YFALSPFYD++CNNE+ +MQ + L + L NL G+E+ L  LP     LP           ++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+     +         AAR A R+  G E V++A +
Sbjct:    1 MEVAAHADD-YNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNLRGIEYEL--LPNAAKQLP-----------QQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKHAPEIAEKLENNNAAAAARAAGREVAGVEGVSTAGV 234          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.160e-28
Identity = 72/162 (44.44%), Postives = 99/162 (61.11%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPP--EMSFLPPG-QPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEA 172
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML ++PP  E   LP G +P         LF++ KQ R S + V  QA+YYI++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A+   S G + W +  +A
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV--------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTWHFDGDA 206          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 117 bits (294), Expect = 7.680e-28
Identity = 73/209 (34.93%), Postives = 116/209 (55.50%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L + L NL G+E+ L+             P      P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 112 bits (280), Expect = 1.020e-26
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELS 152
            M+  G  +D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L + L NL G+E+ L  LP     LP           ++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNLRGVEYEL--LPNAAKQLP-----------QQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 112 bits (281), Expect = 1.190e-26
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDW 166
            D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L E L NL G+E+ L  LP     LP           ++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGL-EQLKNLRGVEYEL--LPNAAKQLP-----------QQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 114 bits (284), Expect = 3.440e-26
Identity = 71/209 (33.97%), Postives = 117/209 (55.98%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            D    SF D +WLQ + L  Q  + YFALSPFYD++CNNE+ +MQ + L + L N+ G+E+ +  LP     LP           ++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNMRGIEYEV--LPNTAKQLP-----------QQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSARVDSILIQLMKKH 199          
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A2D4BKI9_PYTIN (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKI9_PYTIN)

HSP 1 Score: 112 bits (280), Expect = 1.110e-25
Identity = 72/209 (34.45%), Postives = 115/209 (55.02%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L + L N+ G+E+   EL P ++   P Q          LF+++KQ R   + V   AIYY+++G IYQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   ++D +E    +E + +  + +  K   +      +D IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNMRGIEY---ELXPNLAKQLPQQ----------LFLVQKQRRLGRTQVMPLAIYYVLDGTIYQAPNIXAMLTSRLKKCSYRVNKAFHALAAGVRFSPTEG---YAWDXSSEDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDTILIRLMKKH 199          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE1.060e-16696.79Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI1.810e-9896.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA4.910e-4543.98Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE3.570e-3034.52Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA1.160e-2844.44Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT7.680e-2834.93Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL1.020e-2641.45Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC1.190e-2640.51Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD3.440e-2633.97Mediator of RNA polymerase II transcription subuni... [more]
A0A2D4BKI9_PYTIN1.110e-2534.45Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 14..156
e-value: 3.3E-38
score: 130.5
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..273
IPR038566Med6 core domain superfamilyGENE3D3.10.450.580coord: 6..152
e-value: 6.4E-36
score: 124.9
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1269contigE-fasciculatus_F_contig1269:5507..8827 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1269.2052.1mRNA_E-fasciculatus_F_contig1269.2052.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1269 5401..9504 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1269.2052.1 ID=prot_E-fasciculatus_F_contig1269.2052.1|Name=mRNA_E-fasciculatus_F_contig1269.2052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=317bp
MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQC
RMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIK
KQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE
LSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKL
SMDNILMGLVEKYIDGDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAA
SAAATSTMATSTMATSTMATSTTATGATATSAIATNAIATSTAATSTATP
TTSGMTKTLAATEPTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038566Med6_sf
IPR007018Mediator_Med6