mRNA_E-fasciculatus_F_contig1269.2052.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1269.2052.1
Unique NamemRNA_E-fasciculatus_F_contig1269.2052.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 473 bits (1217), Expect = 2.050e-162
Identity = 241/249 (96.79%), Postives = 242/249 (97.19%), Query Frame = 2 
Query:  107 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGDGEGKEGKEPAARGAKRKADGEAVTSASLDA 853
            M+FPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQ V   EGLLNLTGLEFMLVELPPEMSFLPPGQPAP GPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDG  EGKEGKEPAARGAKRKADGEAVTSASLDA
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDG--EGKEGKEPAARGAKRKADGEAVTSASLDA 247
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 9.910e-95
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 2 
Query:  107 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE 556
            MDFPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQGV   EGLLNLTGLEFMLVELPPEMSFLPPGQPAP GPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.270e-42
Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 2 
Query:  128 EDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVK-LPEGLLNLTGLEFMLVELPPEMSFLP-PGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAE-EDRDAKAALKLSMDNILMGLVEKYIDGDGDG 766
            ED  Q SF D +WL+ + LGP+ A+DYFALSPFYD+  NNE CRMQG+      +  +TG+E+++ ELPPE   LP PG P    PQPR L VIKKQ RKS +  EV+ +YYIM+G IYQAP+   LI SRL K    L+ +F  L  L    ++ G YDW W  EA                  + + A +A++   D IL+ LV +Y   +G+G
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPA-HNARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 124 bits (311), Expect = 1.690e-28
Identity = 86/247 (34.82%), Postives = 134/247 (54.25%), Query Frame = 2 
Query:  122 AAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKYIDGDGDGEGKEGKEPAARGAKRKADG-EAVTSASL 847
            A  D    SF D VWLQ + L PQ  L YFALSPFYD++CNNE+ +MQ + L + L NL G+E+ L  LP     LP           ++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+     +         AAR A R+  G E V++A +
Sbjct:    5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNLRGIEYEL--LPNAAKQLP-----------QQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKHAPEIAEKLENNNAAAAARAAGREVAGVEGVSTAGV 234
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.600e-27
Identity = 72/162 (44.44%), Postives = 99/162 (61.11%), Query Frame = 2 
Query:  146 SFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPP--EMSFLPPG-QPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEA 622
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML ++PP  E   LP G +P         LF++ KQ R S + V  QA+YYI++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A+   S G + W +  +A
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV--------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTWHFDGDA 206
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 117 bits (294), Expect = 2.560e-26
Identity = 73/209 (34.93%), Postives = 116/209 (55.50%), Query Frame = 2 
Query:  131 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 745
            D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L + L NL G+E+ L+             P      P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 112 bits (281), Expect = 2.940e-25
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 2 
Query:  131 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDW 604
            D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L E L NL G+E+ L  LP     LP           ++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGL-EQLKNLRGVEYEL--LPNAAKQLP-----------QQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 111 bits (278), Expect = 4.610e-25
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 2 
Query:  107 MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELS 562
            M+  G  +D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L + L NL G+E+ L  LP     LP           ++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDDYN-ASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNLRGVEYEL--LPNAAKQLP-----------QQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137
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BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 114 bits (284), Expect = 9.330e-25
Identity = 71/209 (33.97%), Postives = 117/209 (55.98%), Query Frame = 2 
Query:  131 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 745
            D    SF D +WLQ + L  Q  + YFALSPFYD++CNNE+ +MQ + L + L N+ G+E+ +  LP     LP           ++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNMRGIEYEV--LPNTAKQLP-----------QQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSARVDSILIQLMKKH 199
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Match: A0A2D4BKI9_PYTIN (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKI9_PYTIN)

HSP 1 Score: 112 bits (280), Expect = 2.770e-24
Identity = 72/209 (34.45%), Postives = 115/209 (55.02%), Query Frame = 2 
Query:  131 DPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 745
            D    SF D VWLQ + L  Q  L YFALSPFYD++CNNE+ +MQ + L + L N+ G+E+   EL P ++   P Q          LF+++KQ R   + V   AIYY+++G IYQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   ++D +E    +E + +  + +  K   +      +D IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ-LKNMRGIEY---ELXPNLAKQLPQQ----------LFLVQKQRRLGRTQVMPLAIYYVLDGTIYQAPNIXAMLTSRLKKCSYRVNKAFHALAAGVRFSPTEG---YAWDXSSEDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDTILIRLMKKH 199
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1269.2052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE2.050e-16296.79Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI9.910e-9596.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA1.270e-4243.98Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE1.690e-2834.82Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA4.600e-2744.44Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT2.560e-2634.93Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC2.940e-2540.51Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL4.610e-2541.45Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD9.330e-2533.97Mediator of RNA polymerase II transcription subuni... [more]
A0A2D4BKI9_PYTIN2.770e-2434.45Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1269contigE-fasciculatus_F_contig1269:5401..9504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.8
Seed ortholog evalue2.4e-77
Seed eggNOG ortholog2880.D7G6X0
Preferred nameMED6
KEGG koko:K01530,ko:K15128
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
EggNOG OGsCOG5097@1,KOG3169@2759
EC3.6.3.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med6
Ec32 orthologEc-01_011940.1
Exons5
Model size1734
Cds size951
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927775.874213-UTR-E-fasciculatus_F_contig1269:5400..55061622927775.874213-UTR-E-fasciculatus_F_contig1269:5400..5506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1269 5401..5506 +
1695995689.0046163-UTR-E-fasciculatus_F_contig1269:5400..55061695995689.0046163-UTR-E-fasciculatus_F_contig1269:5400..5506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1269 5401..5506 +
1622927775.9489546-UTR-E-fasciculatus_F_contig1269:8827..95041622927775.9489546-UTR-E-fasciculatus_F_contig1269:8827..9504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1269 8828..9504 +
1695995689.0731354-UTR-E-fasciculatus_F_contig1269:8827..95041695995689.0731354-UTR-E-fasciculatus_F_contig1269:8827..9504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1269 8828..9504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927775.8872533-CDS-E-fasciculatus_F_contig1269:5506..57091622927775.8872533-CDS-E-fasciculatus_F_contig1269:5506..5709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 5507..5709 +
1695995689.0164633-CDS-E-fasciculatus_F_contig1269:5506..57091695995689.0164633-CDS-E-fasciculatus_F_contig1269:5506..5709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 5507..5709 +
1622927775.9018865-CDS-E-fasciculatus_F_contig1269:6627..67241622927775.9018865-CDS-E-fasciculatus_F_contig1269:6627..6724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 6628..6724 +
1695995689.0318878-CDS-E-fasciculatus_F_contig1269:6627..67241695995689.0318878-CDS-E-fasciculatus_F_contig1269:6627..6724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 6628..6724 +
1622927775.9160976-CDS-E-fasciculatus_F_contig1269:7290..74351622927775.9160976-CDS-E-fasciculatus_F_contig1269:7290..7435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 7291..7435 +
1695995689.0422843-CDS-E-fasciculatus_F_contig1269:7290..74351695995689.0422843-CDS-E-fasciculatus_F_contig1269:7290..7435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 7291..7435 +
1622927775.9263005-CDS-E-fasciculatus_F_contig1269:8006..81821622927775.9263005-CDS-E-fasciculatus_F_contig1269:8006..8182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 8007..8182 +
1695995689.0554793-CDS-E-fasciculatus_F_contig1269:8006..81821695995689.0554793-CDS-E-fasciculatus_F_contig1269:8006..8182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 8007..8182 +
1622927775.9387746-CDS-E-fasciculatus_F_contig1269:8497..88271622927775.9387746-CDS-E-fasciculatus_F_contig1269:8497..8827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 8498..8827 +
1695995689.064422-CDS-E-fasciculatus_F_contig1269:8497..88271695995689.064422-CDS-E-fasciculatus_F_contig1269:8497..8827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 8498..8827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1269.2052.1prot_E-fasciculatus_F_contig1269.2052.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1269 5507..8827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1269.2052.1

>prot_E-fasciculatus_F_contig1269.2052.1 ID=prot_E-fasciculatus_F_contig1269.2052.1|Name=mRNA_E-fasciculatus_F_contig1269.2052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=317bp
MDFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQC
RMQGVKLPEGLLNLTGLEFMLVELPPEMSFLPPGQPAPPGPQPRRLFVIK
KQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE
LSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKL
SMDNILMGLVEKYIDGDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAA
SAAATSTMATSTMATSTMATSTTATGATATSAIATNAIATSTAATSTATP
TTSGMTKTLAATEPTR*
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mRNA from alignment at E-fasciculatus_F_contig1269:5401..9504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1269.2052.1 ID=mRNA_E-fasciculatus_F_contig1269.2052.1|Name=mRNA_E-fasciculatus_F_contig1269.2052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1269:5401..9504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACTGAAAAGACCAGCCACCACTGCAGCCAGGTACAGGGGAGCAGGGGGA
GTAACCCCGAAAGCAATCGCCATCGTTGCAAGGAGAGAGAGAGAGGTGTG
GTCCAGATGGATTTCCCTGGGGCAGCGGAAGACCCGGAGCAAAGGTCGTT
TATCGACCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGCAGAACGCTC
TGGACTACTTCGCTCTGAGCCCTTTCTACGACAAGGCATGCAACAACGAG
CAGTGCAGGATGCAGGGCGTGAAGCTACCGGAAGGGCTGCTGAACCTAAC
CGGGCTAGAGTGAGTGGTCTTGGGTGTGTGCCTTGACGTCGTGTGCTGTC
GTGGGTGAGCTGCTGCAGTTCGGGAGATCATGACTTGGCCGTTCTTCAGC
CTTTTGTGTCCCGCGCCCGTTGGCGTGCGATCTTGTCCCTCCTGCTTCTC
GGCGACCCGTTGAGCCGCTGCCTACGCCTCTCATCTGGCAGCAGCCCGAC
GCAGACGGGTGTAGTTCGTATGAGGTTATCTACATGACCGCAACGTCTGG
GCTGTTTCGCAAATGGCAAGGTTGTTTACTACTCGGGCTAGTTTGGTGGA
AGGTACCCATATGATCCAGCCTTCGCATCCCACCGCTTTTCAGCGTTCAG
CCCCCAATCCAACAACCAACAGCAGTAGCGGTTATACCGCAGTGGCAGCG
AAGTATTTTATGTTATTCTACCAGGAGCGTGAGAGGAAGTAGATACTGCA
GCATGTGAACAAGCCAACACTCGGCGGACGGCTCGGAGCGATCAAGGGTT
CAACAGCAGTCACGACCGAATATTGCAGAATATATAATGAACCTGTATGC
ATGCATCCCGTAGCGCTCCCATCTCGCATCTCGCAAAGTCCCGCCGATGT
TGTAGGTACATACAGCAGTATGCATAGCACACCGAGAGGGTCCACCTGAA
GAGATTTGATTTCCGGCTTCCCGGTGGTGCACTACCGCGCAAAAGAACCC
ACGCACTCTCTTTGCCGGTTCTGAAGCAATCACTCTCTCTCGCATTATTG
CACTGCCTCTTGTTGGGCAAGAAAATGCCCCTCTGGGATCCCGAACCCTT
GTGCTGCAGCTTGTTTGAAAGCAAAGCCAACGCGAAACCACTTGCGAGAA
GGCATACTCTAGCTGGGTCGGTAAGACTGAGTGTTTTCTTCTCATTCTCG
ACGTACCGTCCGTGTTCTGTGAATTAGGTTCATGCTGGTGGAGCTCCCAC
CAGAAATGTCCTTCTTGCCACCGGGGCAACCAGCTCCCCCCGGGCCGCAG
CCTCGACGTCTCTTCGTTATCAAGGTGAGCCGTGTGAGAGCCGTGTGAGA
GAGCCGTGTGAGGTGAGAGAGCCGTGCTGTGCCACCGCAAATTTATGCGA
GGCGTAGACTATGTGTCTCGTATACACCGTCCACTGCCGGTTTTAGTTGC
TAGGTGAATACCATGTGGGCGGTTATTGCACGAACGAACCTGAACCTGCC
GTAGCCTCATTATGTATGCATGTATGTAGCCTTGCAAGTCCGATGGGCAT
CGGATGGACAACCGCAAAGGCGATCGGAGGGAGACACCGACGCGTGCGGA
TTTTCTCCAGGATTCCATCTGGTGGCGGGACCACCTCGCTTACGGCCCTT
CAAACGATCCTAGATAGTGTACATCAGCTCAGCACGGCGCATCCATATGA
CCACGGTTTCATGTTGTCTGTCCTGAGGCATACAGCAGTGGTCAGACCTC
GCACTTTCCGAGTATCGAGCATCGAGCACGTGGTACCACCGCTTTGCGCT
GGTCACTGGCGCAGCGTATCGTGTGGTGCCCTGCCTACAACAAGCTTACC
AAAAAGCAAAACGTTCTATACGATTTCTTCCCCTTCCCAGAAACAAGTGC
GCAAGAGCCCAAGTTCGGTTGAGGTCCAGGCGATCTACTACATCATGGAG
GGCGTCATCTACCAGGCCCCCACTGTGCAAAAGCTCATCAAGTCTCGCCT
AAACAAGTTCACCCACCATCTCAACAACGCCTTTGGTGAGGCTGGCCTCC
ATCCCATATGAATGGTCGTATCATTCTTAGGGCGGTGTGGTGAGACTGTA
CTGATCTACAATTGTAGGTAGAATCGTTCAGCCGTCTGTTGGTCGAAGCT
TCTGTTGTGCGGCACGCTGCCGCAAGGGCAGGCGGACGAGCGTGTGTTGA
GGTTAGACAGGTAGGTGTTGTGATCCTGGGGGGTACTTTGGGGGGGGCTC
CTCGTGTTTTCGCTGCATGTATTTCTCGAAATGGTGTGCTTTTCTTGTTT
GGGGGACATATGCATGCCATCGCGCATCCGAGGTGGATATTCGGCTGTCG
CATCGCTCGCGGTTGCCGGCGAAGGAGGCTACTATTAAAGTGTATATTGC
TGTCTGTAGAAGGCAAACTCCCACATGATCATAATCCCGTTTGCACTGCT
GTATGTGCGCTTCACAAGCCTGGAGTACATGCAATCACGGTGTGAAGGTC
GGAGAGCTGGGAGTTGGCCCCAGCAACTCCCCGATACTCATGTTCTTCGT
CCTCGTTCTGTTGTGACCGCCTCGACTACCTCTGTTAACCTGGAACTCCT
CTCCAGTGGAGTTGTCCAAGCTGGCGAAGCTGAGAGACTCTGGTGGGGGC
TACGACTGGGCTTGGCAGAAGGAGGCTAAAGATCTGCAGGAAAAGGCAGA
GGCAGCCGAAGGTGTTGGTGTAGCAGAGGAAGACAGAGACGCGAAAGCGG
CCCTCAAGCTTTCCATGGACAACATCCTCATGGTGAGCCATAGGCATCGA
GACGAAGCAGCTACATACATCCCAAGGAGATAAACTGCTGTATCTACGAA
GGTTGTTGATGCAACGCCAACGATGATCCCTGCACTTCAATCGATGGTGC
ACGACTTTGACCTGCTACTGCTACTGCAAAAAGTCGGACGTCATTTTCTA
CTGTACCCCTACCAAGAGCGTTGTGATGAAGAATTCGTCTGGTACGCGAA
AAAAGCCGTGGCATCAGTCCTTCTCGGGTTGCCTAATATCACGTTTGTTT
GCGAATGCCGACGCTAATATCTGTTCCTGTTGTGATTGTTATGCTAGGGT
CTGGTGGAGAAATACATCGACGGAGACGGAGACGGGGAGGGCAAGGAGGG
GAAGGAACCTGCCGCTAGAGGGGCAAAGCGGAAGGCCGACGGCGAGGCCG
TGACTAGCGCTTCTCTCGATGCGGCAAGTGCTGCTGCTACCAGCACTATG
GCTACCAGCACTATGGCTACCAGCACTATGGCTACCAGTACAACTGCTAC
CGGCGCTACTGCTACCAGCGCAATTGCTACTAACGCAATTGCCACTAGCA
CTGCTGCTACCAGCACTGCCACACCAACGACAAGCGGGATGACGAAAACC
CTTGCGGCAACAGAGCCCACTCGATGACACGTATGACGGCGGCGTGTTCG
TGGGAAGCGGGCTTTTAGGGGGTCTACTACCTCAAAATTATAGGTGGCGT
ATCGTTATTCCTTGTGAGTCTAGAGTTTTCGCCTTAGGTTACGTGTGCAG
CGTTGGTTTTACTACTGTTTTTCGTGTCGTCGGGTAGGCGTTTTGTGCCT
ACAGTGCAGCCTTACTGCTTAAAGGCGTGCAATACGCTGCCGTTTATGTA
CAAAGGTAATGTGACGTACAATACTGATGGTTTACGCTTGGTCCTACGCA
ACGTCGTATGCATAGCTACGTGTACGTTTGGTTCTACCGTTGAGACTTGT
CGCCGAGGAGACATTGAGTCTGCACAAGCTCTGCAGATCTTTTGGCTTGT
GTACGGTGAAATAATCCCTAGATATCGGTCGAAATGCACCCGCTAGTCCT
GCGCGTGCTGCAATTTGACTACGGGATACTCGCCTAGAAATCATCGCGAG
CGTTAGAAGCAAAAGGTGCTGTAGCAACGGGCTTTGCCTGCAGGTAGGTT
CCGTCGGGGCAGGGGCACTGTATGGCTGCAGGGGGTGTCGTGCGGTGGAC
ACTTCTTCCGCGGTAGGTGCCGTGTACTGTACATGGGTTGTTTCGCAATA
CTGCTGCTGTAGTGTCTTGTGGTGCCCATGCTGTTCAACAAACAAGTATT
GCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1269:5401..9504+

>mRNA_E-fasciculatus_F_contig1269.2052.1 ID=mRNA_E-fasciculatus_F_contig1269.2052.1|Name=mRNA_E-fasciculatus_F_contig1269.2052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1902bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1269:5401..9504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATTTCCCTGGGGCAGCGGAAGACCCGGAGCAAAGGTCGTTTATCGA
CCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGCAGAACGCTCTGGACT
ACTTCGCTCTGAGCCCTTTCTACGACAAGGCATGCAACAACGAGCAGTGC
AGGATGCAGGGCGTGAAGCTACCGGAAGGGCTGCTGAACCTAACCGGGCT
AGAATGGATTTCCCTGGGGCAGCGGAAGACCCGGAGCAAAGGTCGTTTAT
CGACCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGCAGAACGCTCTGG
ACTACTTCGCTCTGAGCCCTTTCTACGACAAGGCATGCAACAACGAGCAG
TGCAGGATGCAGGGCGTGAAGCTACCGGAAGGGCTGCTGAACCTAACCGG
GCTAGAGTTCATGCTGGTGGAGCTCCCACCAGAAATGTCCTTCTTGCCAC
CGGGGCAACCAGCTCCCCCCGGGCCGCAGCCTCGACGTCTCTTCGTTATC
AAGGTTCATGCTGGTGGAGCTCCCACCAGAAATGTCCTTCTTGCCACCGG
GGCAACCAGCTCCCCCCGGGCCGCAGCCTCGACGTCTCTTCGTTATCAAG
AAACAAGTGCGCAAGAGCCCAAGTTCGGTTGAGGTCCAGGCGATCTACTA
CATCATGGAGGGCGTCATCTACCAGGCCCCCACTGTGCAAAAGCTCATCA
AGTCTCGCCTAAACAAGTTCACCCACCATCTCAACAACGCCTTTGAAACA
AGTGCGCAAGAGCCCAAGTTCGGTTGAGGTCCAGGCGATCTACTACATCA
TGGAGGGCGTCATCTACCAGGCCCCCACTGTGCAAAAGCTCATCAAGTCT
CGCCTAAACAAGTTCACCCACCATCTCAACAACGCCTTTGTGGAGTTGTC
CAAGCTGGCGAAGCTGAGAGACTCTGGTGGGGGCTACGACTGGGCTTGGC
AGAAGGAGGCTAAAGATCTGCAGGAAAAGGCAGAGGCAGCCGAAGGTGTT
GGTGTAGCAGAGGAAGACAGAGACGCGAAAGCGGCCCTCAAGCTTTCCAT
GGACAACATCCTCATGTGGAGTTGTCCAAGCTGGCGAAGCTGAGAGACTC
TGGTGGGGGCTACGACTGGGCTTGGCAGAAGGAGGCTAAAGATCTGCAGG
AAAAGGCAGAGGCAGCCGAAGGTGTTGGTGTAGCAGAGGAAGACAGAGAC
GCGAAAGCGGCCCTCAAGCTTTCCATGGACAACATCCTCATGGGTCTGGT
GGAGAAATACATCGACGGAGACGGAGACGGGGAGGGCAAGGAGGGGAAGG
AACCTGCCGCTAGAGGGGCAAAGCGGAAGGCCGACGGCGAGGCCGTGACT
AGCGCTTCTCTCGATGCGGCAAGTGCTGCTGCTACCAGCACTATGGCTAC
CAGCACTATGGCTACCAGCACTATGGCTACCAGTACAACTGCTACCGGCG
CTACTGCTACCAGCGCAATTGCTACTAACGCAATTGCCACTAGCACTGCT
GCTACCAGCACTGCCACACCAACGACAAGCGGGATGACGAAAACCCTTGC
GGCAACAGAGCCCACTCGATGAGGTCTGGTGGAGAAATACATCGACGGAG
ACGGAGACGGGGAGGGCAAGGAGGGGAAGGAACCTGCCGCTAGAGGGGCA
AAGCGGAAGGCCGACGGCGAGGCCGTGACTAGCGCTTCTCTCGATGCGGC
AAGTGCTGCTGCTACCAGCACTATGGCTACCAGCACTATGGCTACCAGCA
CTATGGCTACCAGTACAACTGCTACCGGCGCTACTGCTACCAGCGCAATT
GCTACTAACGCAATTGCCACTAGCACTGCTGCTACCAGCACTGCCACACC
AACGACAAGCGGGATGACGAAAACCCTTGCGGCAACAGAGCCCACTCGAT
GA
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