mRNA_E-fasciculatus_F_contig1268.2045.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE) HSP 1 Score: 459 bits (1180), Expect = 4.200e-156 Identity = 261/334 (78.14%), Postives = 272/334 (81.44%), Query Frame = 1
Query: 1 MAGRGRGGRFGGWGGNSRGSGKSVASGRGGGDAAAPSRALNTADCCACASNAPLLIELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGRFTARRMLRGLPPAGPEPDDSRCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKSAATSSV--AGYSSRLPSDTNSLLRMNLRVGSGATSSTAGGRPLSLASNFAALRDGGGETTPDVTPKRPTSRARREEAAAGGETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGR 996
MAGRGRGGRFGG GNS G K VASGRGG DA+A +R LNTADCCAC SN PLL+ELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVG FTARRMLRGLPPAGPEP++S S KS TSSV A SRLPSDTNSLLRMNLRVGS AT++T GGRPLSLASNFAALR GG ETTPDVTPKRPTSRAR+EEA+ GET RSSKAPSFFSGQWEAWL+VDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR+RDDPTSEVLLGYIVERKTASDLASSIIDGR
Sbjct: 1 MAGRGRGGRFGGQDGNSHG--KIVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPENSS--------GVRRTDEENIEPSGSSSSRGGGARKSSNKSTGTSSVTNADAGSRLPSDTNSLLRMNLRVGSSATTTT-GGRPLSLASNFAALRGGGEETTPDVTPKRPTSRARKEEAS--GETARSSKAPSFFSGQWEAWLVVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARKRDDPTSEVLLGYIVERKTASDLASSIIDGR 321
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.960e-17 Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 757 SFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPT----SEVLLGYIVERKTASDLASSIIDGR 996
SF G W LI D RE + Q+++L + CE R LPLGDMLW+AR D + EVLLGYIVERKTASDL SS++DGR
Sbjct: 7 SFAGGIWTPVLIFDTREEHAQASQAAVLNANMLCEVRSLPLGDMLWVARNMDRQSPSYLQEVLLGYIVERKTASDLGSSMVDGR 90
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.270e-12 Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 727 GETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR-RRDDPTSEVLLGYIVERKTASDLASSIIDGR 996
GE S+ P L+ D+RE +VQS LLQ+G+ CE R L LGDM+WIA+ RR D E +L +I+ERK+A+DLA SIIDGR
Sbjct: 418 GERRPDSRCPPVPFEDLSVILVQDHRETRKDAVQSHLLQRGVSCENRALHLGDMIWIAQDRRSDV--EYVLDFIIERKSAADLAESIIDGR 506
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A654I5F0_9CEST (ERCC4 domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654I5F0_9CEST) HSP 1 Score: 75.1 bits (183), Expect = 1.590e-11 Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 667 PDVTPKRPTSRARREEAAAGGETVRSSKA--PSFFSGQWEAWLIVDNREHEFMSVQSSLLQK-----GIRCETRQLPLGDMLWIARRRDD-----PTSEVLLGYIVERKTASDLASSIIDGR 996
P +T RPT+ + + G V S P F G++E L+VD RE+ ++ +L+ I CE R LP+GD +W+AR D P EV++G ++ERK A DLASSI+DGR
Sbjct: 44 PCLTSVRPTASS----TISSGVKVNPSTEDIPRFPGGKYELLLLVDTRENFGLNKMKEMLRSDLSGVSIGCEVRSLPVGDFVWVARPLSDMSALTPFKEVVIGIVIERKRADDLASSIVDGR 161
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A367J7A8_RHIST (Crossover junction endonuclease mus81 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J7A8_RHIST) HSP 1 Score: 75.9 bits (185), Expect = 2.080e-11 Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 763 FSGQWEAWLIVDNREHEFMS----VQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGR 996
F +++ L+VD+RE + + +L KGI+C TR + LGD++WIAR+++ P+ E+ L Y+VERK DL SSI DGR
Sbjct: 556 FPHEYDIVLVVDSREIQMKGNRDYFEKNLTAKGIQCITRSMDLGDVIWIARKKESPSEELFLDYVVERKRLDDLVSSIKDGR 637
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A8H7SI57_9FUNG (ERCC4 domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SI57_9FUNG) HSP 1 Score: 75.9 bits (185), Expect = 2.220e-11 Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 730 ETVRSSKAPSFFSGQWEAWLIVDNREHEFMS----VQSSLLQKGIRCETRQLPLGDMLWIARRRDDP--TSEVLLGYIVERKTASDLASSIIDGR 996
+ V S + S G++E LI+DNRE + + Q L +KG+RC TR L +GD++W+AR+R+ E+ L YIVERK DL SSI DGR
Sbjct: 780 QLVDSLQLESISPGEYEIVLILDNREIQMKNSRTYFQRKLAEKGVRCITRALDVGDVIWVARKRNSTGEDQELFLDYIVERKRLDDLVSSIKDGR 874
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A7M3QYZ8_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QYZ8_SPIER) HSP 1 Score: 74.3 bits (181), Expect = 5.100e-11 Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 754 PSFFSGQWEAWLIVDNREHEFMS-----VQSSLLQKGIRCETRQLPLGDMLWIARRRDD-----PTSEVLLGYIVERKTASDLASSIIDGR 996
P F G +E L+VD RE+ ++ ++S L I CE R LP+GD +W+AR D P EV+LG ++ERK A DLASSI+DGR
Sbjct: 237 PRFSGGAYELVLLVDIRENFGLNKMKEMLRSDLSSVSIGCEVRSLPVGDFVWVARPLSDMNALTPFKEVVLGIVIERKRADDLASSIVDGR 327
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A7D8ZYD3_9TREE (ERCC4 domain-containing protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8ZYD3_9TREE) HSP 1 Score: 73.6 bits (179), Expect = 9.780e-11 Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 751 APSFFSGQWEAWLIVDNREHEFMS----VQSSLLQKGIRCETRQLPLGDMLWIARRRDDP---TSEVLLGYIVERKTASDLASSIIDGR 996
A +F G +E LI+D RE E S + ++L KG++ ETR L +GDM W+ARRRD E +L ++VERK DL SSIIDGR
Sbjct: 183 AITFPHGSYEVVLILDTREVESRSNRDKIATALSAKGVKVETRALRMGDMCWVARRRDGTGGEEDECVLDFVVERKRLDDLCSSIIDGR 271
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: A0A5K3FE98_MESCO (ERCC4 domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FE98_MESCO) HSP 1 Score: 70.5 bits (171), Expect = 4.930e-10 Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 733 TVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQK-GIRCETRQLPLGDMLWIARRRDDPTS--EVLLGYIVERKTASDLASSIIDGR 996
T + + F G + L+VD RE M+ LL + E R LP+GD WIAR + PTS EV+LG IVERK A DLASSI+DGR
Sbjct: 40 TQDDTPSTHFPGGSYTITLLVDVRETFGMNRLKDLLNAHAVSWEARSLPVGDFAWIARSAEGPTSAEEVVLGVIVERKRADDLASSIVDGR 130
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Match: R7SDE4_TREMS (ERCC4 domain-containing protein n=2 Tax=Tremella mesenterica TaxID=5217 RepID=R7SDE4_TREMS) HSP 1 Score: 71.6 bits (174), Expect = 5.000e-10 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 751 APSFFSGQWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDD---PTSEVLLGYIVERKTASDLASSIIDGR 996
A +F +G ++ LI+D RE E + + +L++KGI E R L LGDMLWIARRRD E +L Y+VERK DL SSI DGR
Sbjct: 479 AITFPAGSYDIVLILDTREVESKTRRDEFAEALIKKGINVEQRALRLGDMLWIARRRDGWGGEADECVLDYVVERKRLDDLCSSIKDGR 567 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1268.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1268.2045.1 >prot_E-fasciculatus_F_contig1268.2045.1 ID=prot_E-fasciculatus_F_contig1268.2045.1|Name=mRNA_E-fasciculatus_F_contig1268.2045.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=333bp MAGRGRGGRFGGWGGNSRGSGKSVASGRGGGDAAAPSRALNTADCCACASback to top mRNA from alignment at E-fasciculatus_F_contig1268:475..3316- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1268.2045.1 ID=mRNA_E-fasciculatus_F_contig1268.2045.1|Name=mRNA_E-fasciculatus_F_contig1268.2045.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1268:475..3316- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1268:475..3316- >mRNA_E-fasciculatus_F_contig1268.2045.1 ID=mRNA_E-fasciculatus_F_contig1268.2045.1|Name=mRNA_E-fasciculatus_F_contig1268.2045.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1998bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1268:475..3316- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |