prot_E-fasciculatus_F_contig12677.2044.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12677.2044.1
Unique Nameprot_E-fasciculatus_F_contig12677.2044.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length455
Homology
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 612 bits (1577), Expect = 2.790e-211
Identity = 399/462 (86.36%), Postives = 410/462 (88.74%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE--EKKGGLGE-----RQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRXXXXXXXXXXXXXXXXXXXXXGDNAFLFEDEFANELDXXXXXXXXXXXXXXLAAAVFGSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDXXXXXXXXXGAGVSESKEAMDRLQNEMK 455
            QSR+IRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAE LEV+AVRIQYYRDAAQATLSMEAPR I SKTST S GKK VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAI+AARQAVAEAEAAAKRNEV+LVHQRMGTAPG G KPAG VG+T ELQS++G SKGKE  EK+GG GE     RQEPL+DV LSVGAGGA SVGRR RGRPANEMLLR     XXXXXXXXXXXXXXX    AFLFEDEFA    XXXXXXXXXXXXXXLAAAVFGS+GKSG SR      GG VSMDAVRTLNKAWTNTANS+PREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDD         GAGVSESKEAMDRLQNEMK
Sbjct:  324 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRTIASKTST-SPGKK-VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGG-KPAGDVGITSELQSIVG-SKGKELGEKEGGWGELSSSSRQEPLLDVGLSVGAGGA-SVGRRPRGRPANEMLLRKRLRQXXXXXXXXXXXXXXX----AFLFEDEFAXXXXXXXXXXXXXXXXXXLAAAVFGSDGKSG-SR------GGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRA--GAGVSESKEAMDRLQNEMK 767          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 589 bits (1519), Expect = 6.470e-204
Identity = 394/464 (84.91%), Postives = 405/464 (87.28%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE---EKKGGLGE-----RQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRXXXXXXXXXXXXXXXXXXXXXGDNAFLFEDEFANELDXXXXXXXXXXXXXX-LAAAVFGSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDXXXXXXXXXGAGVSESKEAMDRLQNEMK 455
            QSR+IRLPVHVHDFLNRVRKATLEMTDKNGKLPTD+ELAE LEV+AVRIQYYRDAAQATLSMEAPRNI SKTST S GKK VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAI+AARQAVAEAEAAAKRNEV+LVHQRMGTAPG G KPAG VG+T ELQS+LG SKGKE   EK+G  GE     RQ+PL+DV LSVGAGGA SVGRR RGRPANEMLLR  XXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXX LAAAVFGSEGKSG SR      GG VSMDAVRTLNKAWTNTANS+PREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDD         GAGVSESKEAMDRLQNEMK
Sbjct:  194 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTST-SPGKK-VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGG-KPAGDVGITSELQSILG-SKGKEPEEEKEGSWGELSSSSRQQPLLDVGLSVGAGGA-SVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSG-SR------GGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRA--GAGVSESKEAMDRLQNEMK 643          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.340e-44
Identity = 95/179 (53.07%), Postives = 130/179 (72.63%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASA--GKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 177
            QSR IRLPVHVHDFLN V++AT E++ + G+ PTDEELA +L+VTA +I +YRDAAQ+ LSME  RN  S+  + ++  GK  + +   +  PE  P+ + Q  ++K+ + +LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:  160 QSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.360e-43
Identity = 122/272 (44.85%), Postives = 161/272 (59.19%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKEEKKGGLGERQEPLVDVALSVGA 272
            QSRVIRLP  VH FL+ +RK T E+T  +G++PTDEEL ++L  T  +IQ+YR AA  T S+       +K S  +A     ++G+  S P   P+   Q+  MK KVT LL TL  REQ+VV+AR+GL GA  +TLEE+GRD  LTRERVRQIE++AL KLRQPYRNYRVR+ K+ Q+ V AG+  P   A+ AAR  +AEAE    +       QR    P +G++  GA G+       L     K E K G+   +      A+ V A
Sbjct:  383 QSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRASNKVSDGAADDLGTQIGE-KSTP--NPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAEGLEAK-------QRQ---PASGVEKGGAAGLAAAGDRPL-----KIEFKAGVDASESTQAVEAVLVAA 635          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.140e-40
Identity = 90/178 (50.56%), Postives = 127/178 (71.35%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTAS-AGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 177
            QSR IRLPVHVHD LN +++AT E++ + G+ PTDEEL+ +L+V   +I++YR+AA++ LSME   N   K S AS  GK  + +   +  PE  P+ + Q  ++K+ +++LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:  201 QSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.620e-36
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIG----SKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 172
            QSR IRLPVHVHD LN VR+ T E+++  G+ PTDEE+AE+ ++T  ++ + R A Q T+S+E P N+G    S +   S G+    MG  +      P   A ++++K  V+ +L TLS REQ V++ RFGL     +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:  233 QSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 408          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.760e-35
Identity = 76/174 (43.68%), Postives = 123/174 (70.69%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 174
            QSR IRLPVH+HD LN ++K T E+    G+ PT+EELAE++ +   ++++ ++ ++  +SM+A R   +K S+++     V++G  +      P +  +++++K+ + +L+ TLS REQ+V++ RFGL    P+TLEE+G  F +TRERVRQIEARALHKLRQPYRN+++R++
Sbjct:  303 QSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.910e-34
Identity = 80/175 (45.71%), Postives = 115/175 (65.71%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSK-TSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 174
            QSR IRLPVH+HD LN VRK   E+T K G+ PT EE+AE   +T  ++Q+   +++ T+S E    +G            TV +   ++  E  P+++A   +MK  +  LL TLS+REQ+V++ RFGL     +TLEE+G+ FR+TRER+RQIEARALHKLRQPYRN++++ +
Sbjct:  319 QSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQY 493          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZEZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ1_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.320e-33
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 0
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQAT--LSMEAPRNIGSKTSTASAGKK---TVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 177
            Q R IRLPVHVHD LN +++AT E++   G+ PT  EL+ +L+V A +I++Y  AA++   LSME P N   K S  S G K   T  +   +   E  P+ +AQ  ++K+ +T+LL TLS REQEVV  RFGL     RTLEE+ + F +TRERVRQIE RAL KLRQPYRN ++R +  +
Sbjct:  144 QGRTIRLPVHVHDLLNSIKRATRELSLDLGRTPTYRELSLRLQVPAQKIEFYCKAARSATVLSMEQPLNSAHKGSAVSLGGKSGRTPRLENLLHDSEPLPEDRAQQSMLKESITQLLNTLSPREQEVVCLRFGLDDGRARTLEEISQLFCVTRERVRQIETRALQKLRQPYRNQKLRAYAFE 325          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO)

HSP 1 Score: 133 bits (334), Expect = 1.070e-31
Identity = 78/177 (44.07%), Postives = 116/177 (65.54%), Query Frame = 0
Query:    2 SRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSM-EAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 177
             R+IRLPVH+HD +N VRK   EMT + G+ PT +E+AE+  +T  +I++     Q ++S+ E  R+  +K S+A  G   + +   +  PE  P +QA   ++K  ++ L+ TL+ REQ V++ RFGL     +TL+E+GR F +TRER+RQIEARALHKLRQPYRN+ V+ +  D
Sbjct:  140 GRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQESISINEEVRSSKTKGSSAGLGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAVQCYVKD 316          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3H4_9PHAE2.790e-21186.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI6_ECTSI6.470e-20484.91Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
A0A835ZBY3_9STRA3.340e-4453.07RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6H5KA31_9PHAE3.360e-4344.85RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
A0A835ZES3_9STRA1.140e-4050.56RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2KJI8_9STRA1.620e-3648.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WX55_9STRA5.760e-3543.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1B782_9STRA7.910e-3445.71Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A835ZEZ1_9STRA1.320e-3348.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5JFS9_FISSO1.070e-3144.07RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availableCOILSCoilCoilcoord: 288..315
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 1..174
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 1..174
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 151..162
score: 62.1
coord: 115..127
score: 43.57
coord: 136..151
score: 59.35
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 136..162
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 92..176
e-value: 9.4E-26
score: 91.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 7..77
e-value: 1.2E-13
score: 53.3
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 112..164
e-value: 1.1E-13
score: 50.4
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 15..67
e-value: 4.4E-8
score: 33.1
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 92..173
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 5..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12677contigE-fasciculatus_F_contig12677:514..3826 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12677.2044.1mRNA_E-fasciculatus_F_contig12677.2044.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12677 514..3826 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12677.2044.1 ID=prot_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=455bp
QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQ
YYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQ
SDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRER
VRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAV
AEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE
EKKGGLGERQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRRRQRQEV
AAEEEKEEEEEEEEGDNAFLFEDEFANELDKHLDDDFEDDFEDDLAAAVF
GSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMM
GVAPRSADEEEQQLLSTLDSLNLLDDDEDAGGGGGAGAGVSESKEAMDRL
QNEMK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013324RNA_pol_sigma_r3/r4-like
IPR007624RNA_pol_sigma70_r3
IPR007630RNA_pol_sigma70_r4
IPR036388WH-like_DNA-bd_sf
IPR000943RNA_pol_sigma70