mRNA_E-fasciculatus_F_contig12677.2044.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12677.2044.1
Unique NamemRNA_E-fasciculatus_F_contig12677.2044.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 612 bits (1577), Expect = 2.790e-211
Identity = 399/462 (86.36%), Postives = 410/462 (88.74%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE--EKKGGLGE-----RQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRXXXXXXXXXXXXXXXXXXXXXGDNAFLFEDEFANELDXXXXXXXXXXXXXXLAAAVFGSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDXXXXXXXXXGAGVSESKEAMDRLQNEMK 1365
            QSR+IRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAE LEV+AVRIQYYRDAAQATLSMEAPR I SKTST S GKK VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAI+AARQAVAEAEAAAKRNEV+LVHQRMGTAPG G KPAG VG+T ELQS++G SKGKE  EK+GG GE     RQEPL+DV LSVGAGGA SVGRR RGRPANEMLLR     XXXXXXXXXXXXXXX    AFLFEDEFA    XXXXXXXXXXXXXXLAAAVFGS+GKSG SR      GG VSMDAVRTLNKAWTNTANS+PREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDD         GAGVSESKEAMDRLQNEMK
Sbjct:  324 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRTIASKTST-SPGKK-VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGG-KPAGDVGITSELQSIVG-SKGKELGEKEGGWGELSSSSRQEPLLDVGLSVGAGGA-SVGRRPRGRPANEMLLRKRLRQXXXXXXXXXXXXXXX----AFLFEDEFAXXXXXXXXXXXXXXXXXXLAAAVFGSDGKSG-SR------GGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRA--GAGVSESKEAMDRLQNEMK 767          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 589 bits (1519), Expect = 6.470e-204
Identity = 394/464 (84.91%), Postives = 405/464 (87.28%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE---EKKGGLGE-----RQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRXXXXXXXXXXXXXXXXXXXXXGDNAFLFEDEFANELDXXXXXXXXXXXXXX-LAAAVFGSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDXXXXXXXXXGAGVSESKEAMDRLQNEMK 1365
            QSR+IRLPVHVHDFLNRVRKATLEMTDKNGKLPTD+ELAE LEV+AVRIQYYRDAAQATLSMEAPRNI SKTST S GKK VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAI+AARQAVAEAEAAAKRNEV+LVHQRMGTAPG G KPAG VG+T ELQS+LG SKGKE   EK+G  GE     RQ+PL+DV LSVGAGGA SVGRR RGRPANEMLLR  XXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXX LAAAVFGSEGKSG SR      GG VSMDAVRTLNKAWTNTANS+PREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDD         GAGVSESKEAMDRLQNEMK
Sbjct:  194 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTST-SPGKK-VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGG-KPAGDVGITSELQSILG-SKGKEPEEEKEGSWGELSSSSRQQPLLDVGLSVGAGGA-SVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSG-SR------GGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRA--GAGVSESKEAMDRLQNEMK 643          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.340e-44
Identity = 95/179 (53.07%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASA--GKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
            QSR IRLPVHVHDFLN V++AT E++ + G+ PTDEELA +L+VTA +I +YRDAAQ+ LSME  RN  S+  + ++  GK  + +   +  PE  P+ + Q  ++K+ + +LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:  160 QSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.360e-43
Identity = 122/272 (44.85%), Postives = 161/272 (59.19%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKEEKKGGLGERQEPLVDVALSVGA 816
            QSRVIRLP  VH FL+ +RK T E+T  +G++PTDEEL ++L  T  +IQ+YR AA  T S+       +K S  +A     ++G+  S P   P+   Q+  MK KVT LL TL  REQ+VV+AR+GL GA  +TLEE+GRD  LTRERVRQIE++AL KLRQPYRNYRVR+ K+ Q+ V AG+  P   A+ AAR  +AEAE    +       QR    P +G++  GA G+       L     K E K G+   +      A+ V A
Sbjct:  383 QSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRASNKVSDGAADDLGTQIGE-KSTP--NPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAEGLEAK-------QRQ---PASGVEKGGAAGLAAAGDRPL-----KIEFKAGVDASESTQAVEAVLVAA 635          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.140e-40
Identity = 90/178 (50.56%), Postives = 127/178 (71.35%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTAS-AGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
            QSR IRLPVHVHD LN +++AT E++ + G+ PTDEEL+ +L+V   +I++YR+AA++ LSME   N   K S AS  GK  + +   +  PE  P+ + Q  ++K+ +++LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:  201 QSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.620e-36
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIG----SKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 516
            QSR IRLPVHVHD LN VR+ T E+++  G+ PTDEE+AE+ ++T  ++ + R A Q T+S+E P N+G    S +   S G+    MG  +      P   A ++++K  V+ +L TLS REQ V++ RFGL     +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:  233 QSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 408          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.760e-35
Identity = 76/174 (43.68%), Postives = 123/174 (70.69%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 522
            QSR IRLPVH+HD LN ++K T E+    G+ PT+EELAE++ +   ++++ ++ ++  +SM+A R   +K S+++     V++G  +      P +  +++++K+ + +L+ TLS REQ+V++ RFGL    P+TLEE+G  F +TRERVRQIEARALHKLRQPYRN+++R++
Sbjct:  303 QSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.910e-34
Identity = 80/175 (45.71%), Postives = 115/175 (65.71%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSK-TSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 522
            QSR IRLPVH+HD LN VRK   E+T K G+ PT EE+AE   +T  ++Q+   +++ T+S E    +G            TV +   ++  E  P+++A   +MK  +  LL TLS+REQ+V++ RFGL     +TLEE+G+ FR+TRER+RQIEARALHKLRQPYRN++++ +
Sbjct:  319 QSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQY 493          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZEZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ1_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.320e-33
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 1
Query:    1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQAT--LSMEAPRNIGSKTSTASAGKK---TVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
            Q R IRLPVHVHD LN +++AT E++   G+ PT  EL+ +L+V A +I++Y  AA++   LSME P N   K S  S G K   T  +   +   E  P+ +AQ  ++K+ +T+LL TLS REQEVV  RFGL     RTLEE+ + F +TRERVRQIE RAL KLRQPYRN ++R +  +
Sbjct:  144 QGRTIRLPVHVHDLLNSIKRATRELSLDLGRTPTYRELSLRLQVPAQKIEFYCKAARSATVLSMEQPLNSAHKGSAVSLGGKSGRTPRLENLLHDSEPLPEDRAQQSMLKESITQLLNTLSPREQEVVCLRFGLDDGRARTLEEISQLFCVTRERVRQIETRALQKLRQPYRNQKLRAYAFE 325          
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO)

HSP 1 Score: 133 bits (334), Expect = 1.070e-31
Identity = 78/177 (44.07%), Postives = 116/177 (65.54%), Query Frame = 1
Query:    4 SRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSM-EAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
             R+IRLPVH+HD +N VRK   EMT + G+ PT +E+AE+  +T  +I++     Q ++S+ E  R+  +K S+A  G   + +   +  PE  P +QA   ++K  ++ L+ TL+ REQ V++ RFGL     +TL+E+GR F +TRER+RQIEARALHKLRQPYRN+ V+ +  D
Sbjct:  140 GRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQESISINEEVRSSKTKGSSAGLGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAVQCYVKD 316          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3H4_9PHAE2.790e-21186.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI6_ECTSI6.470e-20484.91Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
A0A835ZBY3_9STRA3.340e-4453.07RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6H5KA31_9PHAE3.360e-4344.85RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
A0A835ZES3_9STRA1.140e-4050.56RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2KJI8_9STRA1.620e-3648.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WX55_9STRA5.760e-3543.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1B782_9STRA7.910e-3445.71Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A835ZEZ1_9STRA1.320e-3348.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5JFS9_FISSO1.070e-3144.07RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12677contigE-fasciculatus_F_contig12677:514..3826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score599.4
Seed ortholog evalue1.4e-168
Seed eggNOG ortholog2880.D8LNI6
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase sigma-70 region 3
Ec32 orthologEc-24_002980.1
Exons3
Model size1365
Cds size1365
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12677.2044.1prot_E-fasciculatus_F_contig12677.2044.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12677 514..3826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.876812-CDS-E-fasciculatus_F_contig12677:513..6631622927774.876812-CDS-E-fasciculatus_F_contig12677:513..663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12677 514..663 +
1695995688.5210898-CDS-E-fasciculatus_F_contig12677:513..6631695995688.5210898-CDS-E-fasciculatus_F_contig12677:513..663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12677 514..663 +
1622927774.8886266-CDS-E-fasciculatus_F_contig12677:1299..15121622927774.8886266-CDS-E-fasciculatus_F_contig12677:1299..1512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12677 1300..1512 +
1695995688.5372543-CDS-E-fasciculatus_F_contig12677:1299..15121695995688.5372543-CDS-E-fasciculatus_F_contig12677:1299..1512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12677 1300..1512 +
1622927774.898661-CDS-E-fasciculatus_F_contig12677:2824..38261622927774.898661-CDS-E-fasciculatus_F_contig12677:2824..3826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12677 2825..3826 +
1695995688.5471206-CDS-E-fasciculatus_F_contig12677:2824..38261695995688.5471206-CDS-E-fasciculatus_F_contig12677:2824..3826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12677 2825..3826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12677.2044.1

>prot_E-fasciculatus_F_contig12677.2044.1 ID=prot_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=455bp
QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQ
YYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQ
SDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRER
VRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAV
AEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE
EKKGGLGERQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRRRQRQEV
AAEEEKEEEEEEEEGDNAFLFEDEFANELDKHLDDDFEDDFEDDLAAAVF
GSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMM
GVAPRSADEEEQQLLSTLDSLNLLDDDEDAGGGGGAGAGVSESKEAMDRL
QNEMK
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mRNA from alignment at E-fasciculatus_F_contig12677:514..3826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12677.2044.1 ID=mRNA_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3313bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12677:514..3826+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGCCGAGTTATCCGGCTGCCGGTCCACGTGCACGACTTTCTCAACCG GGTCCGTAAGGCGACGCTCGAGATGACGGACAAGAACGGAAAGCTTCCCA CCGACGAGGAGCTCGCCGAGCAGCTGGAGGTTACGGCGGTTAGAATTCAG GTATCTACGTTTGTTTGTTTTTTTGAGCCACTTTTGCTCTACATACACTG GAAGTGTGGCACACCTGTCACCACGGAAAATGGGGGGACCATGAACATTA TTATGTAGGATGAAAAAAACACATTACACACGCTTTGGAAGAGAGGGCCG AACTCGTCTCGCTTCTGCCAAAAATGTTCAGTCAAAAAGTAGATACTACA GGAGAGGTGGGGAGGGAGAGGGGCTCTCTCCCCTGTGTGACCACTGATCG GAGCTCCTAAACCGGCAGAAATTGCTGTGAGAACTGGTTTAATGTGACCA CAGAAAGAAAACATTGTACTATTGTAGTCGTGGTTGGGTTTAACGGTCCA TCTAGTGTCACAAAGCGGTTATATCCGCCATTGAGGGGGTTGTCGCTAAC CCGGTTTGACGGTTTTTGTAGGGTATTAATAGTTTGACTACCGAGGTACA GCCGCGCCACGGAATTGTGGGACCGCTGTTCAGGGCATCCCGCTTAACAG GGAACCACTAAACCGGGACCGCGACTAAAGAGCATGAACACGGCCAGGTT GGACAGCAGTCCCAGCTGCAGCCCTCCCCCCCGCCTCCAACAATCATAAC GCCTCCTACCTCCCTTCGCGCACCCCGGCCTTGCAGTACTACCGTGACGC CGCGCAGGCGACCCTGAGCATGGAGGCCCCTCGGAACATCGGTTCAAAGA CTTCCACCGCATCGGCGGGCAAGAAGACTGTGGAGATGGGGCAGGGGGTC TCCGGGCCGGAAAAGACTCCCGACAAGCAGGCGCAGAGCGACGTCATGAA GCAGAAGGTCACGGAGCTGCTGATGACCTTGAGCATCAGGGAGCAAGAGG TGCGTTTTCCACGCGCGCTTGTGTTTTTTGTTGATAGCATGGACCGCGCT GTGACCGACAGGCCAATGAAAATATGCATACGTCATTCTCAGTGCAGTTG AAAAGTTCTTCTTAGTAAGACCATTGGCATGATCTGGGACCCCGTGAGGG GGCGTCATGGGGGAGTCTATTCTACGGGTTAAAGACAGAAACGATCGTAA CAGAAGAAGCGCTGTATTTTTGTGTTGTGCGTGTTTTGGCGTGAGGGGGC GTCACGGGGGGGGCTATTGTACGGGTTGAAGACAGAAACGGTCGTATCAT AAGAAGCACGTGCGTGTTTTGGGGGGCAGGCAAACGGCTGGGTACTATAG GTAGGTACATACCCCGTGAGATCGGGTTGTGCCCTTCCTCGCCCGTCCGT TCCTGTATAGCGTACGTCGCACGATTGGGCGAGTTAACGGCGCGGTTTGG TGGCCCGCCGAATGTGTGCTTGGCGTCTCGTTTCGTGCGGTTGAGTCAAG TTCCTGCTCGTCTGGCTTGTGTGTTTGCTCGGGCACAGCAGGAGACGTAG GATTACCACGTTGGGCACGCCGGAACGACGCACAAAGTTCTGCGATCACG GCGGAGCGAGACCTTACTTCCAGCTGTCGTCCAACACAGAGCGTAGTAAG AGGCGTGAGAAATATGTTCATGATAGCATACCCCCTTTGTCTCTGTGCCC CCCTCCCCCTCTTGAGGGCATGTGGTCAATGGCCTACGGCTGACTCATAG GGTAAACAAAAATTTTGCCAGACCGATTTTTTTACACGGATTCTTCCAAC AGGCACACCTCTCACTACATGACCGAAGCGTGCTATGGCCGGATCGCCAC GAAACCTTGAAGGCCGCAACTACCACGCATGTAGGCGTCTTTGAAGCCTG TGGTGACTGCTCTGGGATCTGCTTGGGCCGAGCAATGTTAATGGGCGCGA GCTGAAGTGCGCATCCGTGGGCGAAATCTCCACACGGATTCGCAGTTTGA CTCGCACCGATCAACATATTTCTCGCCCCACAGCAGTCACCACAGGCCTC CAAACCGCCTGCAGATGTGGTGCGTGCAGCCTTGAAGGTGTCGTGGCCGG CCATAGCGCGCTGTGGTGATGTGGTGATGCGGTGAGAGGTCTGCCTCTTG GAAGAATCCGTGTGCGGCGGGCATGCCGACCGTGAAAAACTCCGTCGGGC CATTCCTCGTCGACCACAAGAGTCAGCCTCGCCGCTAATGCATGCAAAAC ATGATGACACACACACACCGCGATGGATTTTTGCTGTCAATTTTTTTTTT TTTTTGCGTAGGTGGTGAAGGCGCGCTTCGGCCTAGGCGGGGCCCTTCCC CGCACGCTGGAGGAGGTCGGGCGGGACTTCCGGCTGACGCGAGAGCGCGT GCGGCAGATCGAGGCCCGCGCGCTGCACAAGCTCCGGCAGCCGTACCGCA ACTACCGCGTTCGGGACTTCAAGCTGGACCAGATGCTGGTACAGGCAGGG GTGCTCGGCCCGCCGAAGGGAGCTATCCAGGCGGCGAGGCAAGCGGTAGC CGAGGCGGAGGCGGCCGCAAAGAGGAACGAGGTGTCGCTGGTGCACCAGC GGATGGGCACCGCGCCCGGAGCGGGAATGAAGCCTGCCGGGGCAGTGGGG ATGACGCCCGAGCTGCAGTCCATGCTTGGGGGGTCCAAGGGGAAGGAGGA GAAGAAAGGAGGGTTGGGGGAGCGACAAGAGCCTTTGGTGGATGTTGCGC TTAGCGTCGGTGCCGGGGGTGCGGCGAGTGTCGGCCGCAGGTCAAGGGGG AGACCAGCCAACGAGATGTTGCTGCGAAGGAGGCAGCGGCAAGAGGTGGC GGCGGAGGAGGAAAAGGAAGAGGAGGAAGAGGAAGAGGAGGGAGATAATG CATTCCTGTTTGAGGACGAGTTCGCGAACGAGCTCGACAAGCATCTCGAC GACGACTTCGAGGACGACTTCGAAGACGACCTCGCCGCCGCTGTCTTCGG GAGCGAGGGGAAGTCGGGGGGGTCGAGGGCGAATGCCGGCCGCGGGGGGG GTGCGGTGTCGATGGACGCCGTCCGCACGCTCAACAAGGCGTGGACCAAC ACCGCCAATAGCACGCCGAGAGAGGCCGCCGACCAGCTGTCGATGATGGG CGTGGCGCCGCGGTCAGCGGACGAGGAGGAGCAGCAGCTGCTCTCGACCC TCGACTCGCTGAACCTGCTAGATGATGACGAGGACGCGGGCGGCGGTGGC GGGGCGGGAGCGGGGGTGTCGGAGTCGAAGGAGGCGATGGACAGGCTCCA AAACGAGATGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12677:514..3826+

>mRNA_E-fasciculatus_F_contig12677.2044.1 ID=mRNA_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2730bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12677:514..3826+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGCCGAGTTATCCGGCTGCCGGTCCACGTGCACGACTTTCTCAACCG
GGTCCGTAAGGCGACGCTCGAGATGACGGACAAGAACGGAAAGCTTCCCA
CCGACGAGGAGCTCGCCGAGCAGCTGGAGGTTACGGCGGTTAGAATTCAG
CAGAGCCGAGTTATCCGGCTGCCGGTCCACGTGCACGACTTTCTCAACCG
GGTCCGTAAGGCGACGCTCGAGATGACGGACAAGAACGGAAAGCTTCCCA
CCGACGAGGAGCTCGCCGAGCAGCTGGAGGTTACGGCGGTTAGAATTCAG
TACTACCGTGACGCCGCGCAGGCGACCCTGAGCATGGAGGCCCCTCGGAA
CATCGGTTCAAAGACTTCCACCGCATCGGCGGGCAAGAAGACTGTGGAGA
TGGGGCAGGGGGTCTCCGGGCCGGAAAAGACTCCCGACAAGCAGGCGCAG
AGCGACGTCATGAAGCAGAAGGTCACGGAGCTGCTGATGACCTTGAGCAT
CAGGGAGCAAGAGTACTACCGTGACGCCGCGCAGGCGACCCTGAGCATGG
AGGCCCCTCGGAACATCGGTTCAAAGACTTCCACCGCATCGGCGGGCAAG
AAGACTGTGGAGATGGGGCAGGGGGTCTCCGGGCCGGAAAAGACTCCCGA
CAAGCAGGCGCAGAGCGACGTCATGAAGCAGAAGGTCACGGAGCTGCTGA
TGACCTTGAGCATCAGGGAGCAAGAGGTGGTGAAGGCGCGCTTCGGCCTA
GGCGGGGCCCTTCCCCGCACGCTGGAGGAGGTCGGGCGGGACTTCCGGCT
GACGCGAGAGCGCGTGCGGCAGATCGAGGCCCGCGCGCTGCACAAGCTCC
GGCAGCCGTACCGCAACTACCGCGTTCGGGACTTCAAGCTGGACCAGATG
CTGGTACAGGCAGGGGTGCTCGGCCCGCCGAAGGGAGCTATCCAGGCGGC
GAGGCAAGCGGTAGCCGAGGCGGAGGCGGCCGCAAAGAGGAACGAGGTGT
CGCTGGTGCACCAGCGGATGGGCACCGCGCCCGGAGCGGGAATGAAGCCT
GCCGGGGCAGTGGGGATGACGCCCGAGCTGCAGTCCATGCTTGGGGGGTC
CAAGGGGAAGGAGGAGAAGAAAGGAGGGTTGGGGGAGCGACAAGAGCCTT
TGGTGGATGTTGCGCTTAGCGTCGGTGCCGGGGGTGCGGCGAGTGTCGGC
CGCAGGTCAAGGGGGAGACCAGCCAACGAGATGTTGCTGCGAAGGAGGCA
GCGGCAAGAGGTGGCGGCGGAGGAGGAAAAGGAAGAGGAGGAAGAGGAAG
AGGAGGGAGATAATGCATTCCTGTTTGAGGACGAGTTCGCGAACGAGCTC
GACAAGCATCTCGACGACGACTTCGAGGACGACTTCGAAGACGACCTCGC
CGCCGCTGTCTTCGGGAGCGAGGGGAAGTCGGGGGGGTCGAGGGCGAATG
CCGGCCGCGGGGGGGGTGCGGTGTCGATGGACGCCGTCCGCACGCTCAAC
AAGGCGTGGACCAACACCGCCAATAGCACGCCGAGAGAGGCCGCCGACCA
GCTGTCGATGATGGGCGTGGCGCCGCGGTCAGCGGACGAGGAGGAGCAGC
AGCTGCTCTCGACCCTCGACTCGCTGAACCTGCTAGATGATGACGAGGAC
GCGGGCGGCGGTGGCGGGGCGGGAGCGGGGGTGTCGGAGTCGAAGGAGGC
GATGGACAGGCTCCAAAACGAGATGAAGGTGGTGAAGGCGCGCTTCGGCC
TAGGCGGGGCCCTTCCCCGCACGCTGGAGGAGGTCGGGCGGGACTTCCGG
CTGACGCGAGAGCGCGTGCGGCAGATCGAGGCCCGCGCGCTGCACAAGCT
CCGGCAGCCGTACCGCAACTACCGCGTTCGGGACTTCAAGCTGGACCAGA
TGCTGGTACAGGCAGGGGTGCTCGGCCCGCCGAAGGGAGCTATCCAGGCG
GCGAGGCAAGCGGTAGCCGAGGCGGAGGCGGCCGCAAAGAGGAACGAGGT
GTCGCTGGTGCACCAGCGGATGGGCACCGCGCCCGGAGCGGGAATGAAGC
CTGCCGGGGCAGTGGGGATGACGCCCGAGCTGCAGTCCATGCTTGGGGGG
TCCAAGGGGAAGGAGGAGAAGAAAGGAGGGTTGGGGGAGCGACAAGAGCC
TTTGGTGGATGTTGCGCTTAGCGTCGGTGCCGGGGGTGCGGCGAGTGTCG
GCCGCAGGTCAAGGGGGAGACCAGCCAACGAGATGTTGCTGCGAAGGAGG
CAGCGGCAAGAGGTGGCGGCGGAGGAGGAAAAGGAAGAGGAGGAAGAGGA
AGAGGAGGGAGATAATGCATTCCTGTTTGAGGACGAGTTCGCGAACGAGC
TCGACAAGCATCTCGACGACGACTTCGAGGACGACTTCGAAGACGACCTC
GCCGCCGCTGTCTTCGGGAGCGAGGGGAAGTCGGGGGGGTCGAGGGCGAA
TGCCGGCCGCGGGGGGGGTGCGGTGTCGATGGACGCCGTCCGCACGCTCA
ACAAGGCGTGGACCAACACCGCCAATAGCACGCCGAGAGAGGCCGCCGAC
CAGCTGTCGATGATGGGCGTGGCGCCGCGGTCAGCGGACGAGGAGGAGCA
GCAGCTGCTCTCGACCCTCGACTCGCTGAACCTGCTAGATGATGACGAGG
ACGCGGGCGGCGGTGGCGGGGCGGGAGCGGGGGTGTCGGAGTCGAAGGAG
GCGATGGACAGGCTCCAAAACGAGATGAAG
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