mRNA_E-fasciculatus_F_contig12677.2044.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE) HSP 1 Score: 612 bits (1577), Expect = 2.790e-211 Identity = 399/462 (86.36%), Postives = 410/462 (88.74%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE--EKKGGLGE-----RQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRXXXXXXXXXXXXXXXXXXXXXGDNAFLFEDEFANELDXXXXXXXXXXXXXXLAAAVFGSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDXXXXXXXXXGAGVSESKEAMDRLQNEMK 1365
QSR+IRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAE LEV+AVRIQYYRDAAQATLSMEAPR I SKTST S GKK VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAI+AARQAVAEAEAAAKRNEV+LVHQRMGTAPG G KPAG VG+T ELQS++G SKGKE EK+GG GE RQEPL+DV LSVGAGGA SVGRR RGRPANEMLLR XXXXXXXXXXXXXXX AFLFEDEFA XXXXXXXXXXXXXXLAAAVFGS+GKSG SR GG VSMDAVRTLNKAWTNTANS+PREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDD GAGVSESKEAMDRLQNEMK
Sbjct: 324 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRTIASKTST-SPGKK-VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGG-KPAGDVGITSELQSIVG-SKGKELGEKEGGWGELSSSSRQEPLLDVGLSVGAGGA-SVGRRPRGRPANEMLLRKRLRQXXXXXXXXXXXXXXX----AFLFEDEFAXXXXXXXXXXXXXXXXXXLAAAVFGSDGKSG-SR------GGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRA--GAGVSESKEAMDRLQNEMK 767
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI) HSP 1 Score: 589 bits (1519), Expect = 6.470e-204 Identity = 394/464 (84.91%), Postives = 405/464 (87.28%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKE---EKKGGLGE-----RQEPLVDVALSVGAGGAASVGRRSRGRPANEMLLRXXXXXXXXXXXXXXXXXXXXXGDNAFLFEDEFANELDXXXXXXXXXXXXXX-LAAAVFGSEGKSGGSRANAGRGGGAVSMDAVRTLNKAWTNTANSTPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDXXXXXXXXXGAGVSESKEAMDRLQNEMK 1365
QSR+IRLPVHVHDFLNRVRKATLEMTDKNGKLPTD+ELAE LEV+AVRIQYYRDAAQATLSMEAPRNI SKTST S GKK VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAI+AARQAVAEAEAAAKRNEV+LVHQRMGTAPG G KPAG VG+T ELQS+LG SKGKE EK+G GE RQ+PL+DV LSVGAGGA SVGRR RGRPANEMLLR XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX LAAAVFGSEGKSG SR GG VSMDAVRTLNKAWTNTANS+PREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDD GAGVSESKEAMDRLQNEMK
Sbjct: 194 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTST-SPGKK-VEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGG-KPAGDVGITSELQSILG-SKGKEPEEEKEGSWGELSSSSRQQPLLDVGLSVGAGGA-SVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSG-SR------GGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRA--GAGVSESKEAMDRLQNEMK 643
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA) HSP 1 Score: 167 bits (423), Expect = 3.340e-44 Identity = 95/179 (53.07%), Postives = 130/179 (72.63%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASA--GKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
QSR IRLPVHVHDFLN V++AT E++ + G+ PTDEELA +L+VTA +I +YRDAAQ+ LSME RN S+ + ++ GK + + + PE P+ + Q ++K+ + +LL TLS REQEVV+ RFGL RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R + +
Sbjct: 160 QSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE) HSP 1 Score: 172 bits (437), Expect = 3.360e-43 Identity = 122/272 (44.85%), Postives = 161/272 (59.19%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIQAARQAVAEAEAAAKRNEVSLVHQRMGTAPGAGMKPAGAVGMTPELQSMLGGSKGKEEKKGGLGERQEPLVDVALSVGA 816
QSRVIRLP VH FL+ +RK T E+T +G++PTDEEL ++L T +IQ+YR AA T S+ +K S +A ++G+ S P P+ Q+ MK KVT LL TL REQ+VV+AR+GL GA +TLEE+GRD LTRERVRQIE++AL KLRQPYRNYRVR+ K+ Q+ V AG+ P A+ AAR +AEAE + QR P +G++ GA G+ L K E K G+ + A+ V A
Sbjct: 383 QSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRASNKVSDGAADDLGTQIGE-KSTP--NPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAEGLEAK-------QRQ---PASGVEKGGAAGLAAAGDRPL-----KIEFKAGVDASESTQAVEAVLVAA 635
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.140e-40 Identity = 90/178 (50.56%), Postives = 127/178 (71.35%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTAS-AGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
QSR IRLPVHVHD LN +++AT E++ + G+ PTDEEL+ +L+V +I++YR+AA++ LSME N K S AS GK + + + PE P+ + Q ++K+ +++LL TLS REQEVV+ RFGL RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R + +
Sbjct: 201 QSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.620e-36 Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIG----SKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 516
QSR IRLPVHVHD LN VR+ T E+++ G+ PTDEE+AE+ ++T ++ + R A Q T+S+E P N+G S + S G+ MG + P A ++++K V+ +L TLS REQ V++ RFGL +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct: 233 QSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 408
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA) HSP 1 Score: 145 bits (367), Expect = 5.760e-35 Identity = 76/174 (43.68%), Postives = 123/174 (70.69%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 522
QSR IRLPVH+HD LN ++K T E+ G+ PT+EELAE++ + ++++ ++ ++ +SM+A R +K S+++ V++G + P + +++++K+ + +L+ TLS REQ+V++ RFGL P+TLEE+G F +TRERVRQIEARALHKLRQPYRN+++R++
Sbjct: 303 QSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.910e-34 Identity = 80/175 (45.71%), Postives = 115/175 (65.71%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSMEAPRNIGSK-TSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 522
QSR IRLPVH+HD LN VRK E+T K G+ PT EE+AE +T ++Q+ +++ T+S E +G TV + ++ E P+++A +MK + LL TLS+REQ+V++ RFGL +TLEE+G+ FR+TRER+RQIEARALHKLRQPYRN++++ +
Sbjct: 319 QSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQY 493
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A835ZEZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ1_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.320e-33 Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 1
Query: 1 QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQAT--LSMEAPRNIGSKTSTASAGKK---TVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
Q R IRLPVHVHD LN +++AT E++ G+ PT EL+ +L+V A +I++Y AA++ LSME P N K S S G K T + + E P+ +AQ ++K+ +T+LL TLS REQEVV RFGL RTLEE+ + F +TRERVRQIE RAL KLRQPYRN ++R + +
Sbjct: 144 QGRTIRLPVHVHDLLNSIKRATRELSLDLGRTPTYRELSLRLQVPAQKIEFYCKAARSATVLSMEQPLNSAHKGSAVSLGGKSGRTPRLENLLHDSEPLPEDRAQQSMLKESITQLLNTLSPREQEVVCLRFGLDDGRARTLEEISQLFCVTRERVRQIETRALQKLRQPYRNQKLRAYAFE 325
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO) HSP 1 Score: 133 bits (334), Expect = 1.070e-31 Identity = 78/177 (44.07%), Postives = 116/177 (65.54%), Query Frame = 1
Query: 4 SRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQYYRDAAQATLSM-EAPRNIGSKTSTASAGKKTVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 531
R+IRLPVH+HD +N VRK EMT + G+ PT +E+AE+ +T +I++ Q ++S+ E R+ +K S+A G + + + PE P +QA ++K ++ L+ TL+ REQ V++ RFGL +TL+E+GR F +TRER+RQIEARALHKLRQPYRN+ V+ + D
Sbjct: 140 GRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQESISINEEVRSSKTKGSSAGLGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAVQCYVKD 316 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12677.2044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12677.2044.1 >prot_E-fasciculatus_F_contig12677.2044.1 ID=prot_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=455bp QSRVIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEQLEVTAVRIQback to top mRNA from alignment at E-fasciculatus_F_contig12677:514..3826+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12677.2044.1 ID=mRNA_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3313bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12677:514..3826+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12677:514..3826+ >mRNA_E-fasciculatus_F_contig12677.2044.1 ID=mRNA_E-fasciculatus_F_contig12677.2044.1|Name=mRNA_E-fasciculatus_F_contig12677.2044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2730bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12677:514..3826+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |