mRNA_E-fasciculatus_F_contig1267.2038.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1267.2038.1
Unique NamemRNA_E-fasciculatus_F_contig1267.2038.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: D7FU31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.980e-45
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKT 228
            +AKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKT
Sbjct:   13 SAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKT 88
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-24
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARGS+LRVHFKH REV+H IKGM LSKAK +L  VL+YK+AVPFT FTGG GRHAQGKL
Sbjct:   14 AAKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKL 75
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-24
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            ++KA+GS+LRVHFKHMREVAH IKGMKL+KAK +L+DVL++K+AV FT FTGG+G HAQGKL
Sbjct:   13 SSKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKL 74
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A3R7JUX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.230e-24
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARGS+LRVHFKH REV+H IKGM L+KAK +LQ V EYK+AVPFT FTGG GRHAQGKL
Sbjct:   14 AAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKL 75
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: W7TUF4_9STRA (60s ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.870e-24
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARGS+LRVHFKH+REV+H I G ++ KAK +L+DVL+YKRAVPFT F GG+GRHAQGKL
Sbjct:   14 AAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKL 75
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A2D4CDQ7_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDQ7_PYTIN)

HSP 1 Score: 102 bits (254), Expect = 1.170e-23
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARGS+LRVHFKH REV H IKGM LSKAK +LQ VLEYK+AVPFT FTGG GRHAQGKL
Sbjct: 1559 AAKARGSHLRVHFKHCREVCHAIKGMPLSKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKL 1620
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.330e-23
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGK 183
            +AKARGS+LRVHFKH REV   I+GMKLSKAK +L+DVLEYK+ VPFT FTGGVGRHAQ K
Sbjct:   14 SAKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAK 74
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A3F2S2V2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2V2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.350e-23
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARGS+LRVHFKH REV+H IKGM L+KAK +LQ V EYK+AVPFT FTGG GRHAQGKL
Sbjct:  133 AAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKL 194
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: A0A8J5J4G0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J4G0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.380e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARGS+LRVHFKH REV+H IKGM L+KAK +LQ VLEYK+AVPFT FTGG GRHAQGKL
Sbjct:  294 AAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKL 355
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BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Match: F0WNJ9_9STRA (60S ribosomal protein L172 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WNJ9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.430e-23
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKL 186
            AAKARG ++RVHFKH REVAH IK M L KAK +L DVL+YK+AVPFT FTGG GRHAQGKL
Sbjct:   14 AAKARGQHIRVHFKHCREVAHAIKNMNLIKAKRFLSDVLDYKQAVPFTKFTGGCGRHAQGKL 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1267.2038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU31_ECTSI1.980e-4598.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5D6XKD7_9STRA1.200e-2479.03Uncharacterized protein n=25 Tax=Oomycota TaxID=47... [more]
A0A6V1UCU8_HETAK1.200e-2474.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3R7JUX4_9STRA1.230e-2479.03Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
W7TUF4_9STRA2.870e-2474.1960s ribosomal protein l17-2 n=2 Tax=Monodopsidacea... [more]
A0A2D4CDQ7_PYTIN1.170e-2382.26Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S1TQM1_9STRA1.330e-2377.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A3F2S2V2_9STRA1.350e-2379.03Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A8J5J4G0_9STRA1.380e-2380.65Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
F0WNJ9_9STRA1.430e-2375.8160S ribosomal protein L172 putative n=2 Tax=Albugo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1267contigE-fasciculatus_F_contig1267:45..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2e-35
Seed eggNOG ortholog2880.D7FU31
Preferred nameRPL17
KEGG rclassRC00031,RC00042,RC00773
KEGG koko:K00015,ko:K00474,ko:K02880,ko:K06479,ko:K08267
KEGG ReactionR00717,R01388,R03451
KEGG Pathwayko00310,ko00630,ko01100,ko01110,ko01120,ko03010,ko04150,ko04650,map00310,map00630,map01100,map01110,map01120,map03010,map04150,map04650
KEGG ModuleM00177
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007154,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030684,GO:0030687,GO:0031667,GO:0031668,GO:0031669,GO:0031672,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042594,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045787,GO:0045931,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090068,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:1990928,GO:2000045
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0091@1,KOG3353@2759
EC1.1.1.26,1.14.11.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00537,ko01000,ko03011,ko04090,ko04516
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L22/L17, eukaryotic/archaeal
Ec32 orthologEc-27_001230.1
Exons2
Model size230
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.3049705-CDS-E-fasciculatus_F_contig1267:46..1661622927774.3049705-CDS-E-fasciculatus_F_contig1267:46..166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1267 47..166 -
1695995688.1794667-CDS-E-fasciculatus_F_contig1267:46..1661695995688.1794667-CDS-E-fasciculatus_F_contig1267:46..166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1267 47..166 -
1622927774.3180916-CDS-E-fasciculatus_F_contig1267:882..9901622927774.3180916-CDS-E-fasciculatus_F_contig1267:882..990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1267 883..990 -
1695995688.1925347-CDS-E-fasciculatus_F_contig1267:882..9901695995688.1925347-CDS-E-fasciculatus_F_contig1267:882..990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1267 883..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1267.2038.1prot_E-fasciculatus_F_contig1267.2038.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1267 47..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1267.2038.1

>prot_E-fasciculatus_F_contig1267.2038.1 ID=prot_E-fasciculatus_F_contig1267.2038.1|Name=mRNA_E-fasciculatus_F_contig1267.2038.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMF
TGGVGRHAQGKLPIAKDYMGDPSSKT
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mRNA from alignment at E-fasciculatus_F_contig1267:45..990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1267.2038.1 ID=mRNA_E-fasciculatus_F_contig1267.2038.1|Name=mRNA_E-fasciculatus_F_contig1267.2038.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=946bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1267:45..990- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCAAAGGCCCGCGGGTCTAACCTGCGGGTCCACTTCAAGCACATGCG
CGAGGTGGCGCACCTGATCAAGGGCATGAAGCTGTCCAAGGCCAAGGTGT
ACCTGCAGGTGGGAATTAATCGCGCAAGAAGTGTGCGGATCGATTCACTC
AGAAGTGTACAGATCGATTTACTCACAGCAGTCGACGTGGATACATGCGT
TGCACCTTGGTCTGTCCGCTGCTTGCTCCTGCTTTGTTGCGCTGTCTGCC
TCTCTGTTTTTCCGCATTCACTTGCATACAGCAGTCGAAAGTAGATGTCT
TGTTGCACCCTGATTTGTGGCGTGGTCCTGCTTGTGTTGTCCGCGTGTTC
ATCTGTTGATGCATTTACATCAACTAACCTCTTGTGTGTTGAACCTGGCA
CAAATGTCCGGCGGGTGCTCCATCAGTTCTTTGCACAACTTTTTTTTTTA
GCGACATAACGTCATTGTGGTTGTCGCAAAAAGTCAACCCGCAGGGAGAA
GAGCACGTAAGTGACCGACAGCTTCTCCTTCGATGCCCCTCTTGGAGGCT
TTCATTCCCAGAGACAAACTTCGTGTGTTTTGTTGAGCTCTTCTGTTGCC
ACCCTCAAACCAAACCCACACCGGAAAGAAAGGGAGTGCCCGTGTTTCCT
GGTGAGAGTGTTCCTCTCATCTAAATAGTTACAGCTTGCCGTCAACGGAC
CCCCGTCCTTCGAACCGCGTGGTGCCTTACTGCCGGCTGCACGTTTTTGC
ACATGTCCACCGCCGAGTGACTGACTGGGCTGTGTCCATCGCTTTTGCTT
GCCCTTGTTTTGTTTTTTTTGTAGGACGTACTCGAGTACAAGCGCGCGGT
GCCCTTCACCATGTTCACCGGCGGCGTCGGCAGGCACGCTCAGGGCAAGC
TGCCCATCGCCAAGGACTACATGGGGGACCCGTCCAGCAAGACGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1267:45..990-

>mRNA_E-fasciculatus_F_contig1267.2038.1 ID=mRNA_E-fasciculatus_F_contig1267.2038.1|Name=mRNA_E-fasciculatus_F_contig1267.2038.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1267:45..990- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCAAAGGCCCGCGGGTCTAACCTGCGGGTCCACTTCAAGCACATGCG
CGAGGTGGCGCACCTGATCAAGGGCATGAAGCTGTCCAAGGCCAAGGTGT
ACCTGCAGGCCGCAAAGGCCCGCGGGTCTAACCTGCGGGTCCACTTCAAG
CACATGCGCGAGGTGGCGCACCTGATCAAGGGCATGAAGCTGTCCAAGGC
CAAGGTGTACCTGCAGGACGTACTCGAGTACAAGCGCGCGGTGCCCTTCA
CCATGTTCACCGGCGGCGTCGGCAGGCACGCTCAGGGCAAGCTGCCCATC
GCCAAGGACTACATGGGGGACCCGTCCAGCAAGACGGACGTACTCGAGTA
CAAGCGCGCGGTGCCCTTCACCATGTTCACCGGCGGCGTCGGCAGGCACG
CTCAGGGCAAGCTGCCCATCGCCAAGGACTACATGGGGGACCCGTCCAGC
AAGACG
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