mRNA_E-fasciculatus_F_contig1266.2034.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI) HSP 1 Score: 350 bits (899), Expect = 1.940e-115 Identity = 184/208 (88.46%), Postives = 188/208 (90.38%), Query Frame = 1
Query: 1 MIQAGGAGAAALERGEEGSLIAGTEPQRKGWVGVAPALAAAIGVALLLACGLSAHSGDAGDASAAGAAATPMQASRDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSARGCADSASTWSGGDSCTSFCDLSGCADTLENAGVDDLLRRCLDCDETQCSTLAGQPSQACGSAAPFVCLSGAATWGCTNNELAWASVPSTTCGECCDVSGC 624
MIQAG AGAAALERGEEGSLIAGTEP+RKGWV PALAAA+GVALLLACGLSAH DASAAGAAATPMQAS DSVPSCSLLSCTSSGCDWDGAPFLCLDGGSA GCADSASTWSGGD CTSFCDLSGCADTLEN GVDDL RRCL+CDETQCS LAG PSQACGS PFVCLSGAATWGC +NELAWAS PSTTCGECCDVSGC
Sbjct: 1 MIQAG-AGAAALERGEEGSLIAGTEPRRKGWV--VPALAAAVGVALLLACGLSAHHARE-DASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5JR63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR63_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 2.030e-11 Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 628 MLRRTRFPGYPSIDVYQNRHTFAYGVSS-ILVRISLGAHF 744
MLRRTRFPGYPSID Y NR+TF YGVS ILVRISLGAHF
Sbjct: 11 MLRRTRFPGYPSIDFYLNRYTFEYGVSDRILVRISLGAHF 50
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5KML2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML2_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 1.200e-9 Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 628 MLRRTRFPGYPSIDVYQNRHTFAYGVSS-ILVRISLGAHF 744
+ RRTRF GYPSID Y NR+TFAYGVS ILVRISLGAHF
Sbjct: 24 VCRRTRFAGYPSIDFYLNRYTFAYGVSDRILVRISLGAHF 63
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5KJH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH1_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 4.110e-9 Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 622 C*MLRRTRFPGYPSIDVYQNRHTFAYGVSS-ILVRISLGAH 741
C +L RTRF GYPSID Y NR+TFAYGVS ILVRISLGAH
Sbjct: 33 CTVLSRTRFAGYPSIDSYLNRYTFAYGVSGRILVRISLGAH 73
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5L2B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B9_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.050e-7 Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1
Query: 646 FPGYPSIDVYQNRHTFAYGVSSILVRISLGAH 741
FP YPSID Y NR+TFAYGVS ILVRISLGAH
Sbjct: 15 FPWYPSIDFYLNRYTFAYGVSWILVRISLGAH 46
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5JE88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE88_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 9.730e-7 Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = -1
Query: 787 LWPGRVIRWKCRKVLSRIDSKRCSQD 864
LWPG VIRWKC KVL RIDSKRCSQD
Sbjct: 20 LWPGWVIRWKCHKVLCRIDSKRCSQD 45
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5JHR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR2_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 1.500e-6 Identity = 24/33 (72.73%), Postives = 24/33 (72.73%), Query Frame = -1
Query: 787 FTLNWEPLWPGRVIRWKCRKVLSRIDSKRCSQD 885
FTL WEP VIRWKC KVL RIDSKRC QD
Sbjct: 18 FTLKWEPPVARMVIRWKCHKVLYRIDSKRCPQD 50
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Match: A0A6H5KNF5_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF5_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 6.640e-6 Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 3
Query: 777 LCESPESTSWNRSY*EPCDTSIELPVLAT 863
+C SPE+TSW+RSY EPCDTSIELP+LAT
Sbjct: 1 MCVSPENTSWSRSYKEPCDTSIELPILAT 29 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1266.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1266.2034.1 >prot_E-fasciculatus_F_contig1266.2034.1 ID=prot_E-fasciculatus_F_contig1266.2034.1|Name=mRNA_E-fasciculatus_F_contig1266.2034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp MIQAGGAGAAALERGEEGSLIAGTEPQRKGWVGVAPALAAAIGVALLLACback to top mRNA from alignment at E-fasciculatus_F_contig1266:12840..16220- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1266.2034.1 ID=mRNA_E-fasciculatus_F_contig1266.2034.1|Name=mRNA_E-fasciculatus_F_contig1266.2034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3381bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1266:12840..16220- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1266:12840..16220- >mRNA_E-fasciculatus_F_contig1266.2034.1 ID=mRNA_E-fasciculatus_F_contig1266.2034.1|Name=mRNA_E-fasciculatus_F_contig1266.2034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1266:12840..16220- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |