mRNA_E-fasciculatus_F_contig12657.2032.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12657.2032.1
Unique NamemRNA_E-fasciculatus_F_contig12657.2032.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12657.2032.1 vs. uniprot
Match: D8LJV2_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV2_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 7.240e-139
Identity = 209/225 (92.89%), Postives = 215/225 (95.56%), Query Frame = 1 
Query:    1 RLQRNTVVAAVRLVQPLVKASNARGLASCPL-VHNGGRSPKAS-TVVAFQKLLPRAPCRQVTSTTTTQQRQAAEVDTHGQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYKMMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLQEGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQ 669
            +L+RNTVVAAVRLV+PLVKASNARGLASCPL VHN G SPKAS +  A QKLLPRAPCRQVTSTTTTQQRQ AEVD  GQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYK+MGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLL+EGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQ
Sbjct:    2 QLRRNTVVAAVRLVRPLVKASNARGLASCPLRVHNSGTSPKASASCAAVQKLLPRAPCRQVTSTTTTQQRQVAEVDDRGQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQ 226
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BLAST of mRNA_E-fasciculatus_F_contig12657.2032.1 vs. uniprot
Match: A0A484DVK9_BRELC (WW domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVK9_BRELC)

HSP 1 Score: 73.2 bits (178), Expect = 4.500e-12
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:  334 MMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLQEGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTF 654
            M+G  +  +     S+ + Q+C+N+    ++Y    +   F  +   L  +VWL+ RRL  EGE+GK +QEL+FD LW ET  ++R + +SE+ + KYLA+ QQ  F
Sbjct:    1 MLGFLNEDDRLFRHSSAVFQSCMNHTAQPDYYRALGLPQSFRAQQAILMAHVWLVHRRLALEGEKGKIMQELVFDRLWEETVVRIRYLNISELTVNKYLAQVQQICF 107
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BLAST of mRNA_E-fasciculatus_F_contig12657.2032.1 vs. uniprot
Match: A0A482RPP5_9ARCH (Ubiq_cyt_C_chap domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPP5_9ARCH)

HSP 1 Score: 64.3 bits (155), Expect = 2.410e-9
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  373 SSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLQEGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTF 654
            S+  +LQ C   A    W   G + ++F  + L L  +VW++ +RL+QEG  G +VQE LFDELW ++ +++R+  V E+ +   L E Q  +F
Sbjct:   47 SAKHILQNCQLQAGHPFWQLRGGVGSDFRSRHLLLVLHVWMVHKRLMQEGREGLRVQEALFDELWEDSSQRLRAQGVGELSVNARLKEVQSLSF 140
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12657.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJV2_ECTSI7.240e-13992.89WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A484DVK9_BRELC4.500e-1236.45WW domain-containing protein n=1 Tax=Bremia lactuc... [more]
A0A482RPP5_9ARCH2.410e-936.17Ubiq_cyt_C_chap domain-containing protein (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12657contigE-fasciculatus_F_contig12657:80..3013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.9
Seed ortholog evalue3e-111
Seed eggNOG ortholog2880.D8LJV2
KEGG koko:K17662
EggNOG free text desc.Ubiquinol-cytochrome C chaperone
EggNOG OGs2CZHZ@1,2SAFG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categorymitochondrion
Exons5
Model size669
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12657.2032.1prot_E-fasciculatus_F_contig12657.2032.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12657 80..3013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927773.7982483-CDS-E-fasciculatus_F_contig12657:79..1481622927773.7982483-CDS-E-fasciculatus_F_contig12657:79..148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 80..148 -
1695995687.9317095-CDS-E-fasciculatus_F_contig12657:79..1481695995687.9317095-CDS-E-fasciculatus_F_contig12657:79..148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 80..148 -
1622927773.808181-CDS-E-fasciculatus_F_contig12657:733..8141622927773.808181-CDS-E-fasciculatus_F_contig12657:733..814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 734..814 -
1695995687.9479167-CDS-E-fasciculatus_F_contig12657:733..8141695995687.9479167-CDS-E-fasciculatus_F_contig12657:733..814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 734..814 -
1622927773.817827-CDS-E-fasciculatus_F_contig12657:1252..13571622927773.817827-CDS-E-fasciculatus_F_contig12657:1252..1357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 1253..1357 -
1695995687.9587638-CDS-E-fasciculatus_F_contig12657:1252..13571695995687.9587638-CDS-E-fasciculatus_F_contig12657:1252..1357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 1253..1357 -
1622927773.8286357-CDS-E-fasciculatus_F_contig12657:1895..20471622927773.8286357-CDS-E-fasciculatus_F_contig12657:1895..2047Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 1896..2047 -
1695995687.9682124-CDS-E-fasciculatus_F_contig12657:1895..20471695995687.9682124-CDS-E-fasciculatus_F_contig12657:1895..2047Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 1896..2047 -
1622927773.8413663-CDS-E-fasciculatus_F_contig12657:2751..30131622927773.8413663-CDS-E-fasciculatus_F_contig12657:2751..3013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 2752..3013 -
1695995687.977284-CDS-E-fasciculatus_F_contig12657:2751..30131695995687.977284-CDS-E-fasciculatus_F_contig12657:2751..3013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12657 2752..3013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12657.2032.1

>prot_E-fasciculatus_F_contig12657.2032.1 ID=prot_E-fasciculatus_F_contig12657.2032.1|Name=mRNA_E-fasciculatus_F_contig12657.2032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=223bp
RLQRNTVVAAVRLVQPLVKASNARGLASCPLVHNGGRSPKASTVVAFQKL
LPRAPCRQVTSTTTTQQRQAAEVDTHGQVSDERPAKDAVNSHELHEKWGW
KTSDPLYWPYKMMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISN
EFLPKLLWLSTNVWLMSRRLLQEGERGKKVQELLFDELWRETKRQMRSIE
VSEMMLKKYLAEAQQHTFITLVQ
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mRNA from alignment at E-fasciculatus_F_contig12657:80..3013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12657.2032.1 ID=mRNA_E-fasciculatus_F_contig12657.2032.1|Name=mRNA_E-fasciculatus_F_contig12657.2032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12657:80..3013- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTTCAAAGAAATACCGTCGTGGCTGCCGTGCGACTTGTCCAGCCGCT
CGTCAAGGCGAGCAACGCCCGAGGATTAGCGAGCTGTCCCCTGGTGCACA
ACGGCGGAAGATCTCCCAAAGCGTCTACGGTGGTGGCCTTTCAGAAGCTG
TTGCCGAGGGCACCGTGTAGACAGGTAACCTCCACGACCACGACCCAGCA
GAGGCAGGCGGCGGAGGTCGATACTCATGGGCAAGTCTCCGACGAACGGC
CAGCGAAGGACGGTGAGACAGTTGTTGCGGTACATAATGCCGTCCTCATC
AGTCACACGTAAGAAACCACCCGCCCACCCTCTTTCAGTCAGGGAGCCCC
GCATCACACGTGGGTGCAGCTCGCGCGGGAGACACGAACACATCTTTGAT
ATCTGTACAATATTCGCTGTGTGCGAACACCAAACAGGTTGAATACTCAA
ATTAGAAACTGAGGCGCCACTCCAGTACAATTCAAGCGGTGCCAACTTGC
CCTGCTGGGTGGGCTACACTTGCCGCACCTGTTCGGTGTATGGGTGTATG
GACTGCTGTCTCACGTCCAGGACGCATGATGTAGAGATGGTTATGCTGTG
GCACAGCCCTCCCCCCTCATCATGTACATCAATGTCGCGACATCGTCACA
GTTCGACCAATGCCACCCCAATGCTTTCCTTCCAAGTAGGCTGGGGAAGA
GTCTCTGCCACGCAAGCACCACGTCGTTGTACATGTATTGTATGCATATC
TACTGCTGTTGGCAATCCACGTGCCTCTGCCGATGCTCGCCCGTGTTTGC
AGGGAGTCAGCACGAAAATCTCGCGTGTCTTCACCGCTCGCGTCGCGGAC
GTGGAACGTACATATTCTTCCAAACGTCAACCCAACGACTTTCCCCCCCG
CCTTTTCTCTTTTGACGACGTTCGTTTTGACGTCGCATTGGTTATTTTTT
CTCGTCACGCCATCAGCGGTAAATAGTCACGAGCTGCACGAGAAATGGGG
CTGGAAGACTTCTGACCCTCTCTACTGGCCCTACAAGATGATGGGCGTCT
TCTCGACCAAGAACACGAACGCCCTGTCCTCTGCGCGGATGCTGCAGACC
TGCCTCAACAACGCGGAGGTGTGTTGGAAGCCGCTACAGGCGGTAATAGG
GTGCGACGTATAATATCCACGGTGTGTATGCGCGCAGGACACTCGTTGAT
CGCCACGGCTAAGGTTTGCTACCAGAAGTGCGCTTCGGTAGCTCCCAAGA
TGGTACCGTAGGGTAAACGTAAAAAATACAAAAATGCCACACATAACCTG
GACCAAGTTCCAAAGGTCAGTTACTCCATGATGAAGAGGGTGTGCAGATC
AAACGATATGTTGACGGAAAGTTCTCGGAAAGTTCTCGACAAGACGGTTC
CAACGCCATTGCCATTTTCGGCACCGTCACCCTCTGTGCTGTGGAGCAAG
CGAGCTAGCTTTGAAAATCGATCCAGGGGGTGTGATATATTGTGTCATGT
CACCTATGGTGTGCTTTTTTCTCGTGGATTTCCACAATTGACGTCTGTCT
CATGATTGTATTAGCAATATTGCCAGGAAGTTACCTTCACATGGAGCGAG
AATCAGCATGAAAACAGATATGCCCTGCCCACTTGCTTGCCCCCCCGCCC
GCGCAGTGCACGGAGTGGTATTCGGATGGAAAGATCAGCAACGAGTTTCT
CCCGAAGCTTTTGTGGCTCAGCACCAACGTGTGGCTCATGTCCCGCCGAC
TACTCCAAGAGGTGGGTGGAGACACACAAAGACCGCATGTGCACGTCGTA
CCGGCAGCGGTGCAGTTATCCTTTGGAATTGCGCCGCATGCACATAACAT
GGTTGTAATCACCGTTTTACGTTTCTCCTCACCTCGAAGCAGTTGACGCG
ACAGCATTTTTCGCAACAAAGTGGCTTTGTCCGTCGGAGATCATCCAAGA
CCAAACCTGCTGATTTCGCCGATGCAACTGCGTTCTCTGCGCGCTCGCTA
TTAAGTCATGTAACCTCTGCACACACATGACTATTTGCCTGATGTCATAA
GCTGGTCACCATCGTTGGAGCATGCAGGGTCTGATAATTGCAGCTCCTGA
TTGTGACCGCGCACCGTTGTCGGTGTGTCACAGCCGATTGCCCATCCCTG
CACTAACACGTATCGTATCTATGATATCGTGCTTGTTTCGTCTCCAAAGG
GGGAGCGAGGGAAGAAGGTCCAGGAGCTGCTGTTCGACGAGCTGTGGCGC
GAGACCAAGCGGCAGATGCGCTCCATCGAGGTGGGAAGAAAGCTGTCGAC
AGCGGCCCCCGTGCCTTGGGAGAGTGATGCGGTGTAGTGCACACGCTGCT
GTGGCCGTTTGCCGCTTGTTGAGGCGTGACATGCGTAGGCCGGTGCAAAT
GAATGGCGCCCCCCTTTGTCGCGAAACGCCAAAGATATGTACTCTGCTGG
TGCTTAGGAAGCCCCACGGGATAGCCGGTTCGTTTGTGTCGTTCCTCTCA
CCACCAAGTGTCAACGCCAAGTATCAGGTGCCTCCTTGTTGTTCGTGACC
ACGACTCATAGAGCGTCGTGCCTTCCCTTCATACCCGAAGCATGGTGCTG
TGTAAGAGTGGTCCACTCGCTTGAGACCCAGGTCGCACAGAAAGGTATTC
AATCCATGTGGGGTGCAGTAAAAAACGTGCATGGGTGATCTGAGTGTGTT
TTCTCTGGCTTTGTTTCGAAAATCTGACTCGTGCGGCCGCGCCAGATGCC
GGCTTAGCCGTACACATGCATTGTTTTTTTGTCAAGCCAGCCCCGACCGA
CGGTGCTTATCATTTATCACACATTTACATTTCCCCTTTCTGAATCAACG
CTGGGTTCCCCGCAGGTATCCGAAATGATGCTCAAGAAGTATCTCGCCGA
AGCTCAGCAGCACACGTTCATCACCCTTGTGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12657:80..3013-

>mRNA_E-fasciculatus_F_contig12657.2032.1 ID=mRNA_E-fasciculatus_F_contig12657.2032.1|Name=mRNA_E-fasciculatus_F_contig12657.2032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12657:80..3013- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTTCAAAGAAATACCGTCGTGGCTGCCGTGCGACTTGTCCAGCCGCT
CGTCAAGGCGAGCAACGCCCGAGGATTAGCGAGCTGTCCCCTGGTGCACA
ACGGCGGAAGATCTCCCAAAGCGTCTACGGTGGTGGCCTTTCAGAAGCTG
TTGCCGAGGGCACCGTGTAGACAGGTAACCTCCACGACCACGACCCAGCA
GAGGCAGGCGGCGGAGGTCGATACTCATGGGCAAGTCTCCGACGAACGGC
CAGCGAAGGACGAGGCTTCAAAGAAATACCGTCGTGGCTGCCGTGCGACT
TGTCCAGCCGCTCGTCAAGGCGAGCAACGCCCGAGGATTAGCGAGCTGTC
CCCTGGTGCACAACGGCGGAAGATCTCCCAAAGCGTCTACGGTGGTGGCC
TTTCAGAAGCTGTTGCCGAGGGCACCGTGTAGACAGGTAACCTCCACGAC
CACGACCCAGCAGAGGCAGGCGGCGGAGGTCGATACTCATGGGCAAGTCT
CCGACGAACGGCCAGCGAAGGACGCGGTAAATAGTCACGAGCTGCACGAG
AAATGGGGCTGGAAGACTTCTGACCCTCTCTACTGGCCCTACAAGATGAT
GGGCGTCTTCTCGACCAAGAACACGAACGCCCTGTCCTCTGCGCGGATGC
TGCAGACCTGCCTCAACAACGCGGAGCGGTAAATAGTCACGAGCTGCACG
AGAAATGGGGCTGGAAGACTTCTGACCCTCTCTACTGGCCCTACAAGATG
ATGGGCGTCTTCTCGACCAAGAACACGAACGCCCTGTCCTCTGCGCGGAT
GCTGCAGACCTGCCTCAACAACGCGGAGTGCACGGAGTGGTATTCGGATG
GAAAGATCAGCAACGAGTTTCTCCCGAAGCTTTTGTGGCTCAGCACCAAC
GTGTGGCTCATGTCCCGCCGACTACTCCAAGAGTGCACGGAGTGGTATTC
GGATGGAAAGATCAGCAACGAGTTTCTCCCGAAGCTTTTGTGGCTCAGCA
CCAACGTGTGGCTCATGTCCCGCCGACTACTCCAAGAGGGGGAGCGAGGG
AAGAAGGTCCAGGAGCTGCTGTTCGACGAGCTGTGGCGCGAGACCAAGCG
GCAGATGCGCTCCATCGAGGGGGAGCGAGGGAAGAAGGTCCAGGAGCTGC
TGTTCGACGAGCTGTGGCGCGAGACCAAGCGGCAGATGCGCTCCATCGAG
GTATCCGAAATGATGCTCAAGAAGTATCTCGCCGAAGCTCAGCAGCACAC
GTTCATCACCCTTGTGCAGGTATCCGAAATGATGCTCAAGAAGTATCTCG
CCGAAGCTCAGCAGCACACGTTCATCACCCTTGTGCAG
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