mRNA_E-fasciculatus_F_contig1265.2026.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1265.2026.1
Unique NamemRNA_E-fasciculatus_F_contig1265.2026.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1265.2026.1 vs. uniprot
Match: A0A6H5JTL5_9PHAE (5-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL5_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.930e-41
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = -2 
Query:    3 MPNTPQERLDRITNQLAAGFSSP-ETSATAMAAMARPPITAHALDTSTGKPARGLPLKLEQKSGGGRGGRYWLLLGSCETNED 248
            MPNTPQERLDRITN LAAG+SSP  T+A AMAA ARPPITAHALDTSTGKPA GLPLKLEQKSGGGRGG YWLLLGSCETNED
Sbjct:    1 MPNTPQERLDRITNHLAAGYSSPGRTAAAAMAATARPPITAHALDTSTGKPACGLPLKLEQKSGGGRGGGYWLLLGSCETNED 83
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BLAST of mRNA_E-fasciculatus_F_contig1265.2026.1 vs. uniprot
Match: W7TL27_9STRA (5-hydroxyisourate hydrolase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL27_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.500e-7
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = -2 
Query:    3 LAAGFSSPETSATAMAAMARPPITAHALDTSTGKPARGLPLKLEQKS--GGGRGGRYWLLLGSCETNED 203
            LAA  SS   ++    +  R PIT+H LDT+ GKPA+G+PL+LEQ+   G G G   W LLG   TN D
Sbjct:   16 LAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNAD 84
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1265.2026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTL5_9PHAE8.930e-4189.165-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp.... [more]
W7TL27_9STRA3.500e-747.835-hydroxyisourate hydrolase n=3 Tax=Nannochloropsi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1265contigE-fasciculatus_F_contig1265:3678..3995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.2804606-CDS-E-fasciculatus_F_contig1265:3677..39951622927772.2804606-CDS-E-fasciculatus_F_contig1265:3677..3995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1265 3678..3995 +
1695995687.5998647-CDS-E-fasciculatus_F_contig1265:3677..39951695995687.5998647-CDS-E-fasciculatus_F_contig1265:3677..3995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1265 3678..3995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1265.2026.1prot_E-fasciculatus_F_contig1265.2026.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1265 3678..3995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1265.2026.1

>prot_E-fasciculatus_F_contig1265.2026.1 ID=prot_E-fasciculatus_F_contig1265.2026.1|Name=mRNA_E-fasciculatus_F_contig1265.2026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
PSSFVSQLPRRSQYLPPLPPPDFCSSLRGRPRAGLPVEVSRACAVIGGLA
IAAIAVADVSGEENPAASWFVILSRRSWGVFGISKEAVRVCTPGNPGPGT
TAGKRL
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mRNA from alignment at E-fasciculatus_F_contig1265:3678..3995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1265.2026.1 ID=mRNA_E-fasciculatus_F_contig1265.2026.1|Name=mRNA_E-fasciculatus_F_contig1265.2026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1265:3678..3995+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCATCCTCATTTGTCTCACAGCTCCCTAGAAGAAGCCAGTACCTCCCGCC
CCTCCCGCCCCCAGACTTCTGCTCGAGCTTGAGAGGCAGGCCGCGCGCCG
GTTTGCCCGTTGAAGTGTCGAGGGCATGCGCCGTGATCGGCGGCCTCGCC
ATTGCTGCCATTGCTGTTGCTGATGTTTCAGGCGAAGAGAATCCCGCGGC
AAGTTGGTTTGTGATTCTATCCAGACGCTCCTGGGGCGTGTTCGGCATCA
GCAAAGAGGCAGTTAGAGTCTGCACGCCTGGTAACCCCGGGCCGGGCACA
ACCGCGGGCAAAAGGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1265:3678..3995+

>mRNA_E-fasciculatus_F_contig1265.2026.1 ID=mRNA_E-fasciculatus_F_contig1265.2026.1|Name=mRNA_E-fasciculatus_F_contig1265.2026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1265:3678..3995+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCATCCTCATTTGTCTCACAGCTCCCTAGAAGAAGCCAGTACCTCCCGCC
CCTCCCGCCCCCAGACTTCTGCTCGAGCTTGAGAGGCAGGCCGCGCGCCG
GTTTGCCCGTTGAAGTGTCGAGGGCATGCGCCGTGATCGGCGGCCTCGCC
ATTGCTGCCATTGCTGTTGCTGATGTTTCAGGCGAAGAGAATCCCGCGGC
AAGTTGGTTTGTGATTCTATCCAGACGCTCCTGGGGCGTGTTCGGCATCA
GCAAAGAGGCAGTTAGAGTCTGCACGCCTGGTAACCCCGGGCCGGGCACA
ACCGCGGGCAAAAGGCTGCCATCCTCATTTGTCTCACAGCTCCCTAGAAG
AAGCCAGTACCTCCCGCCCCTCCCGCCCCCAGACTTCTGCTCGAGCTTGA
GAGGCAGGCCGCGCGCCGGTTTGCCCGTTGAAGTGTCGAGGGCATGCGCC
GTGATCGGCGGCCTCGCCATTGCTGCCATTGCTGTTGCTGATGTTTCAGG
CGAAGAGAATCCCGCGGCAAGTTGGTTTGTGATTCTATCCAGACGCTCCT
GGGGCGTGTTCGGCATCAGCAAAGAGGCAGTTAGAGTCTGCACGCCTGGT
AACCCCGGGCCGGGCACAACCGCGGGCAAAAGGCTG
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