mRNA_E-fasciculatus_F_contig12649.2025.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12649.2025.1
Unique NamemRNA_E-fasciculatus_F_contig12649.2025.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.740e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            +GQRCCQE GC+ RPSYG DGSK AEFCS H++ GM +VT+KR
Sbjct:   26 KGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKR 68
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.180e-10
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            +G RCCQE GC+ RPSYG DG K AEFCS H++ GMI++T+KR
Sbjct:   22 KGNRCCQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKR 64
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: A0A6H5LQ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ79_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.440e-10
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            QG+RCCQE GC+TRPSYG+  SK+A+FCS H  +GM+DV +KR
Sbjct:   26 QGRRCCQEHGCTTRPSYGQAHSKHAQFCSQHKLRGMVDVVKKR 68
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: D7FH62_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH62_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.180e-10
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            QGQR CQE GC+TRPSYGK  SK AEFCS H  +GMIDV RK+
Sbjct:   84 QGQRSCQEHGCTTRPSYGKVHSKKAEFCSQHRDRGMIDVRRKK 126
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: A0A6H5KDL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.380e-9
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            QGQRCCQE GC+T+PSYG+  SKNA+ CS H++ GM ++T+KR
Sbjct:  151 QGQRCCQEHGCTTQPSYGQAHSKNAQLCSQHSKPGMTNLTKKR 193
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 5.840e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            +GQ  C+E GCS RPSYGKD SK AEFCS HA++GM++V  KR
Sbjct:  243 RGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKR 285
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: D7FH54_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH54_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.360e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            QGQRCC E GC+T PS+GK GSK AEFCS HA+ GM +V  KR
Sbjct:   12 QGQRCCLEDGCTTWPSFGKYGSKRAEFCSQHAKPGMTNVKHKR 54
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.260e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   13 CCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            CCQE GC+TRPSYG  G K AEFCS H + GM+++  KR
Sbjct:   26 CCQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKR 64
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BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: A0A6H5JZM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.120e-7
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            Q + CCQEP C+TRPS+G+ GSK AEFCS H++  M++V  K+
Sbjct:   42 QKRACCQEPDCTTRPSFGEYGSKKAEFCSKHSKPAMVNVVDKK 84
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Match: D8LFM7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM7_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 8.730e-7
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKR 129
            QGQR CQE GC+ +PSYG+  + NA+FCS H++ GM  +T+KR
Sbjct:   45 QGQRYCQEHGCTAQPSYGQAHNNNAQFCSQHSKPGMTKLTKKR 87
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12649.2025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FY22_ECTSI1.740e-1169.77EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KY67_9PHAE2.180e-1065.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQ79_9PHAE3.440e-1065.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH62_ECTSI4.180e-1072.09EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KDL0_9PHAE3.380e-962.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI5.840e-965.12EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FH54_ECTSI6.360e-967.44EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JGG2_9PHAE4.260e-761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZM2_9PHAE6.120e-755.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFM7_ECTSI8.730e-755.81EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12649contigE-fasciculatus_F_contig12649:450..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7FH62
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_006625.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.232193-CDS-E-fasciculatus_F_contig12649:449..11541622927772.232193-CDS-E-fasciculatus_F_contig12649:449..1154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12649 450..1154 +
1695995687.5850995-CDS-E-fasciculatus_F_contig12649:449..11541695995687.5850995-CDS-E-fasciculatus_F_contig12649:449..1154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12649 450..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12649.2025.1prot_E-fasciculatus_F_contig12649.2025.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12649 450..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12649.2025.1

>prot_E-fasciculatus_F_contig12649.2025.1 ID=prot_E-fasciculatus_F_contig12649.2025.1|Name=mRNA_E-fasciculatus_F_contig12649.2025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=235bp
QGQRCCQEPGCSTRPSYGKDGSKNAEFCSHHAQKGMIDVTRKRCGHPGCT
KQPSYGKDGSKKAEFCAQHARQCMVDLMHKRCGHPGCVKRPSYGNDGSKK
AEFCATHARQGMVNLVHKRCCHPGCKKQPSYGIAGSKKREFCVRHAQQDM
VDVIRKRKRCGHPGCTKQPSYGKDGSKKAEFCAQHARQGMVGLKRKRCGH
PGCVKVPSYGNDGSKKAEFCAQHARQGMVDLMHKR
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mRNA from alignment at E-fasciculatus_F_contig12649:450..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12649.2025.1 ID=mRNA_E-fasciculatus_F_contig12649.2025.1|Name=mRNA_E-fasciculatus_F_contig12649.2025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=705bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12649:450..1154+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGACAACGATGTTGCCAGGAGCCCGGTTGTTCAACGCGGCCATCGTA
CGGCAAAGATGGCAGCAAGAATGCGGAGTTTTGCTCTCACCACGCGCAAA
AGGGCATGATCGATGTCACCAGGAAGAGATGCGGTCATCCAGGTTGCACA
AAGCAGCCGTCATATGGCAAAGACGGCAGCAAGAAGGCAGAATTCTGTGC
GCAACACGCGCGACAGTGCATGGTTGATCTTATGCACAAGAGGTGCGGTC
ATCCAGGTTGCGTGAAGAGGCCGTCGTATGGAAACGACGGCAGCAAGAAG
GCAGAATTCTGTGCAACACACGCGCGGCAGGGCATGGTTAATCTTGTGCA
CAAGAGGTGCTGCCATCCAGGGTGCAAGAAGCAACCTTCATATGGTATAG
CCGGCAGCAAGAAGAGGGAGTTCTGTGTCCGGCACGCGCAGCAGGACATG
GTCGATGTCATCAGGAAGAGGAAGAGATGCGGTCATCCAGGTTGCACAAA
GCAGCCGTCATATGGCAAAGACGGCAGCAAGAAGGCAGAATTCTGTGCGC
AACACGCGCGACAGGGCATGGTTGGTCTTAAGAGGAAGAGATGCGGTCAT
CCAGGTTGCGTGAAGGTTCCGTCGTATGGAAACGACGGCAGCAAGAAGGC
AGAATTCTGTGCGCAACACGCGCGACAGGGCATGGTTGATCTTATGCACA
AGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12649:450..1154+

>mRNA_E-fasciculatus_F_contig12649.2025.1 ID=mRNA_E-fasciculatus_F_contig12649.2025.1|Name=mRNA_E-fasciculatus_F_contig12649.2025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12649:450..1154+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGACAACGATGTTGCCAGGAGCCCGGTTGTTCAACGCGGCCATCGTA
CGGCAAAGATGGCAGCAAGAATGCGGAGTTTTGCTCTCACCACGCGCAAA
AGGGCATGATCGATGTCACCAGGAAGAGATGCGGTCATCCAGGTTGCACA
AAGCAGCCGTCATATGGCAAAGACGGCAGCAAGAAGGCAGAATTCTGTGC
GCAACACGCGCGACAGTGCATGGTTGATCTTATGCACAAGAGGTGCGGTC
ATCCAGGTTGCGTGAAGAGGCCGTCGTATGGAAACGACGGCAGCAAGAAG
GCAGAATTCTGTGCAACACACGCGCGGCAGGGCATGGTTAATCTTGTGCA
CAAGAGGTGCTGCCATCCAGGGTGCAAGAAGCAACCTTCATATGGTATAG
CCGGCAGCAAGAAGAGGGAGTTCTGTGTCCGGCACGCGCAGCAGGACATG
GTCGATGTCATCAGGAAGAGGAAGAGATGCGGTCATCCAGGTTGCACAAA
GCAGCCGTCATATGGCAAAGACGGCAGCAAGAAGGCAGAATTCTGTGCGC
AACACGCGCGACAGGGCATGGTTGGTCTTAAGAGGAAGAGATGCGGTCAT
CCAGGTTGCGTGAAGGTTCCGTCGTATGGAAACGACGGCAGCAAGAAGGC
AGAATTCTGTGCGCAACACGCGCGACAGGGCATGGTTGATCTTATGCACA
AGAGGCAGGGACAACGATGTTGCCAGGAGCCCGGTTGTTCAACGCGGCCA
TCGTACGGCAAAGATGGCAGCAAGAATGCGGAGTTTTGCTCTCACCACGC
GCAAAAGGGCATGATCGATGTCACCAGGAAGAGATGCGGTCATCCAGGTT
GCACAAAGCAGCCGTCATATGGCAAAGACGGCAGCAAGAAGGCAGAATTC
TGTGCGCAACACGCGCGACAGTGCATGGTTGATCTTATGCACAAGAGGTG
CGGTCATCCAGGTTGCGTGAAGAGGCCGTCGTATGGAAACGACGGCAGCA
AGAAGGCAGAATTCTGTGCAACACACGCGCGGCAGGGCATGGTTAATCTT
GTGCACAAGAGGTGCTGCCATCCAGGGTGCAAGAAGCAACCTTCATATGG
TATAGCCGGCAGCAAGAAGAGGGAGTTCTGTGTCCGGCACGCGCAGCAGG
ACATGGTCGATGTCATCAGGAAGAGGAAGAGATGCGGTCATCCAGGTTGC
ACAAAGCAGCCGTCATATGGCAAAGACGGCAGCAAGAAGGCAGAATTCTG
TGCGCAACACGCGCGACAGGGCATGGTTGGTCTTAAGAGGAAGAGATGCG
GTCATCCAGGTTGCGTGAAGGTTCCGTCGTATGGAAACGACGGCAGCAAG
AAGGCAGAATTCTGTGCGCAACACGCGCGACAGGGCATGGTTGATCTTAT
GCACAAGAGG
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