mRNA_E-fasciculatus_F_contig12645.2024.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12645.2024.1
Unique NamemRNA_E-fasciculatus_F_contig12645.2024.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.890e-72
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE
Sbjct:  551 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 664          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.890e-72
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE
Sbjct:  599 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 712          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A2N9GH18_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GH18_FAGSY)

HSP 1 Score: 120 bits (302), Expect = 1.720e-29
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            K   F+     P  L  G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E PS    P LV+ PLST  NWERE   W P++N V +VG+ ++RTV  E
Sbjct:   68 KQKEFQQYEHSPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENPS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARTVIRE 177          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A1D1YBA8_9ARAE (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBA8_9ARAE)

HSP 1 Score: 120 bits (302), Expect = 1.800e-29
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   13 FELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            F+     P  L  G ++PYQLEGLNFLR SW  NT+VILADEMGLGKTIQ++AF+ S+L E PS    P L++ PLST  NWERE   W P++N V + G+ ++R V  E
Sbjct:  272 FQQYEHSPKFLSGGTLHPYQLEGLNFLRYSWSKNTHVILADEMGLGKTIQSIAFLASLLEENPS----PHLIVAPLSTLRNWEREFATWAPQMNVVMYFGSAQARAVIRE 377          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A388KTT0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KTT0_CHABU)

HSP 1 Score: 120 bits (300), Expect = 3.400e-29
Identity = 60/111 (54.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTV 333
            KPT F  L   P  L  G ++PYQLEG+N+LR SWW   ++ILADEMGLGKTIQT+AF+ S+  E    E  P LV+ PLST  NWERE   W P L  V +VG  K+R+V
Sbjct:  587 KPTTFSALEATPQNLTGGDLHPYQLEGVNWLRFSWWQGRHIILADEMGLGKTIQTIAFLASLKDE---GEDGPHLVVAPLSTLRNWEREFATWAPFLYVVMYVGTAKARSV 694          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A9V9Q4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9Q4_MONBE)

HSP 1 Score: 119 bits (298), Expect = 6.300e-29
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   10 RFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTV 333
            RF+ L +QP  ++ G ++ YQLEGLNFL  SW  N NVILADEMGLGKT+QT+AFV  + H   +++  P L++ PLST  NWERE   W P+L+ V F+G   SR V
Sbjct:  622 RFKSLKKQPSNIKHGELHDYQLEGLNFLIFSWMRNRNVILADEMGLGKTLQTIAFVSWLKH---TAQRGPFLIVAPLSTCPNWEREFAQWAPDLHVVTFIGGASSREV 726          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A7C9EPY0_OPUST (DNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPY0_OPUST)

HSP 1 Score: 109 bits (272), Expect = 8.120e-29
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   43 LRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTV 333
            L  G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E       P LV+ PLST  NWERE   W P++N V +VG+ ++R+V
Sbjct:    3 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGIY----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARSV 95          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A067FMW3_CITSI (Uncharacterized protein n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FMW3_CITSI)

HSP 1 Score: 119 bits (297), Expect = 8.280e-29
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            KP  F+     P  L  G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  ER S    P LV+ PLST  NWERE   W P++N V +VG  ++R +  E
Sbjct:  267 KPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIRE 376          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A067FJF2_CITSI (Uncharacterized protein n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FJF2_CITSI)

HSP 1 Score: 119 bits (297), Expect = 8.410e-29
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            KP  F+     P  L  G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  ER S    P LV+ PLST  NWERE   W P++N V +VG  ++R +  E
Sbjct:  267 KPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIRE 376          
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A2H5NW06_CITUN (Uncharacterized protein n=2 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NW06_CITUN)

HSP 1 Score: 119 bits (297), Expect = 8.510e-29
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
            KP  F+     P  L  G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  ER S    P LV+ PLST  NWERE   W P++N V +VG  ++R +  E
Sbjct:  252 KPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIRE 361          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZW8_9PHAE1.890e-72100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7A4_ECTSI1.890e-72100.00Similar to chromodomain helicase DNA binding prote... [more]
A0A2N9GH18_FAGSY1.720e-2953.51Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1D1YBA8_9ARAE1.800e-2953.64CHD3-type chromatin-remodeling factor PICKLE n=1 T... [more]
A0A388KTT0_CHABU3.400e-2954.05Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A9V9Q4_MONBE6.300e-2952.78Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7C9EPY0_OPUST8.120e-2955.67DNA helicase (Fragment) n=1 Tax=Opuntia streptacan... [more]
A0A067FMW3_CITSI8.280e-2952.63Uncharacterized protein n=2 Tax=Citrus sinensis Ta... [more]
A0A067FJF2_CITSI8.410e-2952.63Uncharacterized protein n=2 Tax=Citrus sinensis Ta... [more]
A0A2H5NW06_CITUN8.510e-2952.63Uncharacterized protein n=2 Tax=Citrus unshiu TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12645contigE-fasciculatus_F_contig12645:2317..3216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.3e-62
Seed eggNOG ortholog2880.D7G7A4
KEGG koko:K11643,ko:K14439
KEGG Pathwayko04550,ko05165,ko05203,map04550,map05165,map05203
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.1746638-CDS-E-fasciculatus_F_contig12645:2316..24171622927772.1746638-CDS-E-fasciculatus_F_contig12645:2316..2417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12645 2317..2417 +
1695995687.562014-CDS-E-fasciculatus_F_contig12645:2316..24171695995687.562014-CDS-E-fasciculatus_F_contig12645:2316..2417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12645 2317..2417 +
1622927772.192338-CDS-E-fasciculatus_F_contig12645:2975..32161622927772.192338-CDS-E-fasciculatus_F_contig12645:2975..3216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12645 2976..3216 +
1695995687.5744534-CDS-E-fasciculatus_F_contig12645:2975..32161695995687.5744534-CDS-E-fasciculatus_F_contig12645:2975..3216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12645 2976..3216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12645.2024.1prot_E-fasciculatus_F_contig12645.2024.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12645 2317..3216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12645.2024.1

>prot_E-fasciculatus_F_contig12645.2024.1 ID=prot_E-fasciculatus_F_contig12645.2024.1|Name=mRNA_E-fasciculatus_F_contig12645.2024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLG
KTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCV
RFVGNMKSRTVALE
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mRNA from alignment at E-fasciculatus_F_contig12645:2317..3216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12645.2024.1 ID=mRNA_E-fasciculatus_F_contig12645.2024.1|Name=mRNA_E-fasciculatus_F_contig12645.2024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12645:2317..3216+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCCGACGAGGTTCGAGCTGCTCACGGAGCAGCCGTGGGGGCTGCGGCA GGGCCCCATGTACCCGTATCAGCTCGAGGGGCTGAACTTCCTCCGTCAAA GGTTCGTTCGTCTCATTTGTTTCGGAGTCATGTTGGTAGGGGGAAGGGGT GGAACTAGTGAAAGTATGGGTCGCACCATGGGTTTTGGCTTGGCTCTGGG CTTTGCGAAAGCTTGGTGGGGCGATACGCCGGGGTTTCCGCGGCCGAGGC GTGCAGCAGGGGGGAGGATGAAACATTTCAGTATACGAGAAGAGAGAGAG AGAAAGAGAGACCGAAACAGCCGGAGAGAACCAGAGACACGATACCCGCC ACCACAAGCTGAAGGGGTCCGGTAACGCCGCTTCTTCCCCCGATATCCGA AAGTGTTGACTGTCATTGTTTGCAGGGTGCTGGGGTAGTATGCGCATTGG CTTGCTGCTTCGCGGCGCCGTGGAGTGTTTTTATAGGAATTGGGGGATGT GCATATTTGACTCCAATCTGTACTTCATTCCGTCCCTCCCTCCTCATCTG TCTCTCTCTCTTTCTCTTTTTCTCCCTCCGTCTCTCCCCACATAATATTG AATATCTACCTCCCACGATGCTCATGATTTATCTCGACCCCGGCGCGGGG GCCCCGCAGCTGGTGGTCTAACACCAACGTCATCCTCGCCGACGAGATGG GCCTGGGCAAGACCATCCAGACCCTCGCCTTCGTCCGCAGCATCCTCCAC GAGAGACCCTCCTCCGAGCACCGGCCCGTGCTGGTGATCTGCCCCCTGTC GACCACGGACAACTGGGAGAGGGAGCTGGAGATGTGGTGCCCGGAGCTCA ACTGCGTGCGCTTCGTGGGGAACATGAAGTCCCGCACGGTTGCTCTCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12645:2317..3216+

>mRNA_E-fasciculatus_F_contig12645.2024.1 ID=mRNA_E-fasciculatus_F_contig12645.2024.1|Name=mRNA_E-fasciculatus_F_contig12645.2024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12645:2317..3216+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCCGACGAGGTTCGAGCTGCTCACGGAGCAGCCGTGGGGGCTGCGGCA
GGGCCCCATGTACCCGTATCAGCTCGAGGGGCTGAACTTCCTCCGTCAAA
GAAGCCGACGAGGTTCGAGCTGCTCACGGAGCAGCCGTGGGGGCTGCGGC
AGGGCCCCATGTACCCGTATCAGCTCGAGGGGCTGAACTTCCTCCGTCAA
AGCTGGTGGTCTAACACCAACGTCATCCTCGCCGACGAGATGGGCCTGGG
CAAGACCATCCAGACCCTCGCCTTCGTCCGCAGCATCCTCCACGAGAGAC
CCTCCTCCGAGCACCGGCCCGTGCTGGTGATCTGCCCCCTGTCGACCACG
GACAACTGGGAGAGGGAGCTGGAGATGTGGTGCCCGGAGCTCAACTGCGT
GCGCTTCGTGGGGAACATGAAGTCCCGCACGGTTGCTCTCGAGCTGGTGG
TCTAACACCAACGTCATCCTCGCCGACGAGATGGGCCTGGGCAAGACCAT
CCAGACCCTCGCCTTCGTCCGCAGCATCCTCCACGAGAGACCCTCCTCCG
AGCACCGGCCCGTGCTGGTGATCTGCCCCCTGTCGACCACGGACAACTGG
GAGAGGGAGCTGGAGATGTGGTGCCCGGAGCTCAACTGCGTGCGCTTCGT
GGGGAACATGAAGTCCCGCACGGTTGCTCTCGAG
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