mRNA_E-fasciculatus_F_contig12645.2024.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE) HSP 1 Score: 243 bits (621), Expect = 1.890e-72 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE
Sbjct: 551 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 664
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI) HSP 1 Score: 243 bits (621), Expect = 1.890e-72 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE
Sbjct: 599 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 712
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A2N9GH18_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GH18_FAGSY) HSP 1 Score: 120 bits (302), Expect = 1.720e-29 Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
K F+ P L G ++PYQLEGLNFLR SW T+VILADEMGLGKTIQ++AF+ S+ E PS P LV+ PLST NWERE W P++N V +VG+ ++RTV E
Sbjct: 68 KQKEFQQYEHSPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENPS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARTVIRE 177
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A1D1YBA8_9ARAE (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBA8_9ARAE) HSP 1 Score: 120 bits (302), Expect = 1.800e-29 Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 1
Query: 13 FELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
F+ P L G ++PYQLEGLNFLR SW NT+VILADEMGLGKTIQ++AF+ S+L E PS P L++ PLST NWERE W P++N V + G+ ++R V E
Sbjct: 272 FQQYEHSPKFLSGGTLHPYQLEGLNFLRYSWSKNTHVILADEMGLGKTIQSIAFLASLLEENPS----PHLIVAPLSTLRNWEREFATWAPQMNVVMYFGSAQARAVIRE 377
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A388KTT0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KTT0_CHABU) HSP 1 Score: 120 bits (300), Expect = 3.400e-29 Identity = 60/111 (54.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTV 333
KPT F L P L G ++PYQLEG+N+LR SWW ++ILADEMGLGKTIQT+AF+ S+ E E P LV+ PLST NWERE W P L V +VG K+R+V
Sbjct: 587 KPTTFSALEATPQNLTGGDLHPYQLEGVNWLRFSWWQGRHIILADEMGLGKTIQTIAFLASLKDE---GEDGPHLVVAPLSTLRNWEREFATWAPFLYVVMYVGTAKARSV 694
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A9V9Q4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9Q4_MONBE) HSP 1 Score: 119 bits (298), Expect = 6.300e-29 Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 10 RFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTV 333
RF+ L +QP ++ G ++ YQLEGLNFL SW N NVILADEMGLGKT+QT+AFV + H +++ P L++ PLST NWERE W P+L+ V F+G SR V
Sbjct: 622 RFKSLKKQPSNIKHGELHDYQLEGLNFLIFSWMRNRNVILADEMGLGKTLQTIAFVSWLKH---TAQRGPFLIVAPLSTCPNWEREFAQWAPDLHVVTFIGGASSREV 726
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A7C9EPY0_OPUST (DNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPY0_OPUST) HSP 1 Score: 109 bits (272), Expect = 8.120e-29 Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 43 LRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTV 333
L G ++PYQLEGLNFLR SW T+VILADEMGLGKTIQ++AF+ S+ E P LV+ PLST NWERE W P++N V +VG+ ++R+V
Sbjct: 3 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGIY----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARSV 95
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A067FMW3_CITSI (Uncharacterized protein n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FMW3_CITSI) HSP 1 Score: 119 bits (297), Expect = 8.280e-29 Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
KP F+ P L G ++PYQLEGLNFLR SW T+VILADEMGLGKTIQ++AF+ S+ ER S P LV+ PLST NWERE W P++N V +VG ++R + E
Sbjct: 267 KPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIRE 376
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A067FJF2_CITSI (Uncharacterized protein n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FJF2_CITSI) HSP 1 Score: 119 bits (297), Expect = 8.410e-29 Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
KP F+ P L G ++PYQLEGLNFLR SW T+VILADEMGLGKTIQ++AF+ S+ ER S P LV+ PLST NWERE W P++N V +VG ++R + E
Sbjct: 267 KPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIRE 376
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Match: A0A2H5NW06_CITUN (Uncharacterized protein n=2 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NW06_CITUN) HSP 1 Score: 119 bits (297), Expect = 8.510e-29 Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 1 KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSRTVALE 342
KP F+ P L G ++PYQLEGLNFLR SW T+VILADEMGLGKTIQ++AF+ S+ ER S P LV+ PLST NWERE W P++N V +VG ++R + E
Sbjct: 252 KPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIRE 361 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12645.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12645.2024.1 >prot_E-fasciculatus_F_contig12645.2024.1 ID=prot_E-fasciculatus_F_contig12645.2024.1|Name=mRNA_E-fasciculatus_F_contig12645.2024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp KPTRFELLTEQPWGLRQGPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGback to top mRNA from alignment at E-fasciculatus_F_contig12645:2317..3216+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12645.2024.1 ID=mRNA_E-fasciculatus_F_contig12645.2024.1|Name=mRNA_E-fasciculatus_F_contig12645.2024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12645:2317..3216+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12645:2317..3216+ >mRNA_E-fasciculatus_F_contig12645.2024.1 ID=mRNA_E-fasciculatus_F_contig12645.2024.1|Name=mRNA_E-fasciculatus_F_contig12645.2024.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12645:2317..3216+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |